Typing tool
|
Complete norovirus genomes
KC463910 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS KC463910 7559 bp RNA linear VRL 15-APR-2013 DEFINITION Norovirus Hu/GII.4/Ohio/684/USA, complete genome. ACCESSION KC463910 VERSION KC463910.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Ohio/684/USA ORGANISM Norovirus Hu/GII.4/Ohio/684/USA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7559) AUTHORS Dai,X., Lou,F., Ma,Y., Hughes,J.H. and Li,J. TITLE Sequence analysis of GII human norovirus JOURNAL Unpublished REFERENCE 2 (bases 1 to 7559) AUTHORS Dai,X., Lou,F., Ma,Y., Hughes,J.H. and Li,J. TITLE Direct Submission JOURNAL Submitted (08-JAN-2013) Department of Food Science and Technology, The Ohio State University, 2015 Fyffe Road, Columbus, OH 43210, USA COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7559 /organism="Norovirus Hu/GII.4/Ohio/684/USA" /mol_type="genomic RNA" /strain="684" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1316726" /country="USA" /collection_date="2012" /note="group: II; genotype: 4" CDS 5..5104 /note="ORF1" /codon_start=1 /product="non-structural polyprotein" /protein_id="AGI96382.1" /translation="MKMASNDASAAAVADSNNDTAKSSSDGMLSSMAVTFKRALGARP KQPPPREKPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELAPLPLYWRPVYTPQYLISPDTLKRLSGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKIKKVANIFLCALSSLFTRPIKDIIGK IRPLNILNILASCDWTFAGVVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEALEVEK AKRDFPGQPDMWKNAFSSDFSHIRLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPAITTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVKTM PELKQALKNVSIKKCQIVYSGCTYILESDGKGNVKVDRVQSAAVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQDLWSKPQVENTEETTSKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERSSLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIANFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPTLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGRIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTPPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLRPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6707 /note="ORF2" /codon_start=1 /product="VP1" /protein_id="AGI96383.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIPGSHNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTSTNGSTRGHKATVYTGSADFSPKLGRVQFSTDTNNDFETNQNTKFTPVGVIQDG STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6707..7513 /note="ORF3" /codon_start=1 /product="VP2" /protein_id="AGI96384.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKTLDWSGTRYWAPDARITTYNAGRFPTPQLSGAPPGRANLRATVPARGSSSTSS NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRSLSPFLRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctgaca gcaacaacga 61 caccgcaaaa tcttcaagtg acggaatgct ttctagcatg gctgtcactt ttaaacgagc 121 cctcggggcg cggcctaaac agcctccccc gagggaaaaa ccacaaagac ccccacgacc 181 acctactcca gaactggtta aaaatattcc ccctccccca cccaacggag aggatgaaat 241 agtggtttct tatagtgtca aagatggtgt ttccggcttg cctgaccttt ccaccgtcag 301 gcaaccagaa gaatctaaca cggccttcag cgtccctcca ctcaatcaga gggagaatag 361 agatgctaag gaaccactta ctggaacaat tctggaaatg tgggacgggg aaatctacca 421 ctatggcctg tatgtggagc gaggtcttgt actaggtgtg cacaaaccac cagctgccat 481 cagtctcgct aaggttgagc tagcaccact ccccttgtac tggagacctg tgtacactcc 541 tcagtacctc atctctccag acactctcaa gagattatcc ggagaaacgt tcccctacac 601 agcctttgac aacaactgtt atgccttttg ttgctgggtc ctggacctaa atgactcgtg 661 gctgagcagg agaatgatcc agaggacaac tggtttcttc aggccctacc aagactggaa 721 taggaaaccc cttcccacta tggatgactc caaaataaag aaggtagcta acatattcct 781 gtgtgctctg tcctcgctgt tcaccagacc cataaaagat ataataggga agataaggcc 841 tcttaacatc ctcaacatct tggcctcatg tgattggact tttgcaggcg tagtggagtc 901 cctgatactc ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttacttggtg attacgagct acaaggacct gaggacctcg cagtggagct 1021 cgtccccgtg gtgatggggg gaattggttt ggtgttagga ttcaccaaag agaagatcgg 1081 gaaaatgttg tcatctgccg cgtccacctt gagagcctgt aaagaccttg gtgcatatgg 1141 gctagagatc ctaaagttgg tcatgaagtg gttcttcccg aagaaggagg aggcaaacga 1201 gctggctata gtgaggtcta tcgaggatgc agtcctggat ctcgaagcaa ttgaaaacaa 1261 ccatatgacc accttgctca aagacaaaga cagcctggca acctatatga gaacacttga 1321 ccttgaggag gagaaagcca ggaagctctc aaccaagtct gcctcacccg acatcgtggg 1381 cacaatcaac gccctcctgg cgagaatcgc tgccgcacgt tctctggtgc atcgagcgaa 1441 ggaggagctt tccagcagac caagacctgt ggtgttgatg atatcaggca ggccaggaat 1501 agggaagacc cacctcgcta gggaagtggc taagagaatc gcagcctccc ttacaggaga 1561 ccagcgtgtg ggtctcatcc cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga 1621 gagggtcgtc ctatgggacg attatggaat gagcaaccct attcacgatg ccctcaggct 1681 gcaagaactc gctgacactt gccccctcac tctaaactgt gacaggattg aaaataaagg 1741 aaaggtcttt gacagcgatg tcatcattat caccactaat ctggccaacc cagcaccact 1801 ggactatgtc aactttgagg catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc 1861 ccttgaagtc gaaaaggcga agcgtgactt cccaggccag cctgacatgt ggaagaacgc 1921 tttcagttct gatttctcac acataagact agcactggcc ccacagggtg gtttcgacaa 1981 gaacgggaac accccacacg gaaagggcgt catgaagact ctcaccactg gctcccttat 2041 tgcccgggca tcagggctac tccatgagag gttagatgaa tttgaactac agggtccagc 2101 tattaccacc ttcaatttcg atcgcaataa agtgcttgcc tttagacagc ttgctgctga 2161 aaataaatat gggttgatgg acacaatgag ggttgggaaa caactcaagg atgtcaaaac 2221 catgccagaa ctcaaacaag cactcaagaa tgtctcaatc aagaagtgcc aaatagtgta 2281 tagtggttgc acctacatac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt 2341 ccaaagcgcc gccgtgcaga ccaacaatga gctggctggt gccctgcacc atctgaggtg 2401 cgccagaatc agatactatg tcaagtgtgt ccaggaggcc ctatactcca tcattcaaat 2461 tgctggggct gcatttgtca ccacgcgcat tgccaagcgc atgaacatac aagacctatg 2521 gtccaagcca caagtggaaa atacagagga gaccaccagc aaggacgggt gcccaaaacc 2581 taaggatgat gaggagtttg tcatttcatc tgacgacatc aaaactgagg gtaagaaagg 2641 gaagaacaaa actggtcgcg gcaagaagca cacagcattt tcaagcaaag gcctcagtga 2701 tgaagagtac gatgagtaca agaggattag agaagaaagg aatggcaagt actccataga 2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgactga 2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttta ggccgacaag 2881 aaaacaacgc aaggaggaaa gatcctccct cggtctggtc acaggctctg aaattaggaa 2941 aagaaaccca gatgacttca aacccaaggg gaaattgtgg gctgacgatg acaggagtgt 3001 ggactacaat gagaaactca gttttgaggc cccaccaagc atctggtcga gaatagccaa 3061 ctttggttca ggctggggat tctgggtctc ccccagtctg ttcataacat caacccatgt 3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaatac aggtacacaa 3181 gtcaggcgag ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacgggcat 3241 gatattagaa gaaggcgcac ctgagggcac cgtggtcaca ctactcatca aaaggtccac 3301 tggggaactc atgcccctag ctgctaggat ggggacccat gcgaccatga agatccaagg 3361 gcgcactgtt ggaggccaga tgggcatgct tctgacagga tccaacgcca agagcatgga 3421 cctgggtact acaccaggtg attgtggctg cccctatatc tacaagaggg gtaatgacta 3481 tgtggtcatt ggagtccaca cggctgccgc gcgtggggga aacactgtca tatgtgccac 3541 ccaggggagt gaaggagagg ccacacttga aggtggtgac aacaagggga catactgtgg 3601 tgcaccaatc ctaggcccag ggagtgcccc aacactcagc accaagacca aattctggag 3661 atcgtccaca gcaccactcc cacctggcac ctatgaacca gcctatctcg gtggcaagga 3721 ccctagagtc aagggtggcc cttcactgca gcaagtcatg agggaacagt tgaagccatt 3781 cacagagcca aggggcaagc caccaaaacc aagtgtatta gaagctgcca agaagaccat 3841 tatcaatgtc cttgagcaaa caattgatcc acctgagaaa tggtcgttcg cacaagcttg 3901 cgcgtccctt gacaagacca cttccagtgg ccatccgcac cacatgcgga aaaacgactg 3961 ctggaacggg gagtccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat 4021 gtttgaagaa gggaagaaca tgaccccagt ctacacagct gcgctcaagg atgagttagt 4081 taaaactgac aaaatttatg gtaggatcaa gaagaggctt ctctggggct cggacttggc 4141 gaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcacactg 4201 tgtcacacct cccattagag ttggaatgaa tatgaatgag gatggcccca tcatcttcga 4261 gaggcattcc aggtacacat atcactatga tgctgattac tctcggtggg attcaacaca 4321 acagagagcc gtgttggcag cagctctgga aatcatggtc aaattctccc cagaaccaca 4381 cttggctcag gtagtcgcgg aagaccttct ttctcctagc gtggtggatg tgggcgattt 4441 cacaatatca atcaacgagg gtcttccctc tggggtgccc tgcacctctc aatggaactc 4501 catcgcccac tggcttctca ctctctgtgc gctctctgaa gtcacaaacc tatcccctga 4561 taccatacag gctaactccc tcttctcttt ttatggtgat gatgaaattg ttagcacaga 4621 cataaaattg gacccagaga aattgacagc aaagctcaag gagtatgggt taagaccaac 4681 ccgccctgac aaaactgaag gaccccttgt catctctgaa gacctgaatg gcttaacttt 4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaattgg agcagagttc 4801 aatactcagg caaatgtatt ggactagggg tcccaaccat ggagaccctt ctgaaacaat 4861 gattccacac tcccaaagac ccatacaatt gatgtcccta ctgggggagg ccgctctcca 4921 cggcccagca ttttacagta aaatcagcaa attggtcatt gcagagctaa aagaaggtgg 4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 gtgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtg gttggtgccg ctattgcggc acctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaacaatt ttgtacaagc ccctggtgga gagtttacag 5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttaggc cctgatttga 5341 atccctacct ttcccatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc 5401 aggtaatact cgcggggaac gcgttcaccg ccgggaaaat catatttgca gcagtcccac 5461 caaatttccc aactgaaggt ttgagcccca gccaggtcac tatgttcccc cacataatag 5521 tagatgtcag gcaattggaa cctgtgttga tccccttacc cgatgttagg aataatttct 5581 accattataa tcaatcaaat gattccacca tcaaattgat agcaatgttg tacacgccac 5641 ttagggctaa taatgccggg gatgatgtct tcacagtttc ttgtcgagtt cttacgagac 5701 catcccccga ttttgatttt atatttttgg tgccacccac agttgaatca agaactaaac 5761 cattttctgt cccaatttta actgttgagg agatgaccaa ttcaaggttc cccattcctt 5821 tggaaaagtt gttcacaggc cccagtagtg cctttgttgt ccaaccacaa aacggcaggt 5881 gcacgactga tggcgtgctc ctaggtacca ctcaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccat attccaggca gtcataacta cacaatgaat ttggcctccc 6001 aaaattggaa cagttacgat ccaacagaag aaatcccagc ccctctagga actccagatt 6061 tcgtggggaa gattcaaggt gtgctcactc aaaccactag tacaaatggc tcgacccgcg 6121 gccacaaagc tacagtgtac actgggagcg ccgacttttc tccaaaactg ggtagagttc 6181 aattttccac tgacacaaac aatgattttg aaactaacca aaatacaaaa ttcaccccag 6241 tcggcgttat ccaggatggt agtactaccc cccgaaatga accccaacaa tgggtgctcc 6301 caagttactc aggcagaaac attcacaatg tgcacctagc ccccgctgtg gcccccactt 6361 tcccgggcga gcagctcctc ttcttcagat ctactatgcc cggatgcagc gggtacccca 6421 acatggattt ggattgtctg ctcccccagg aatgggtgca gtacttctac caggaggcag 6481 ccccagcaca atctgatgtg gctctgttaa gatttgtgaa tccagacaca ggtagggttt 6541 tgtttgagtg taagcttcat aaatcaggct atgttacagt ggctcatact ggccaacatg 6601 atttggttat cccccccaat ggttatttta gatttgattc ctgggtcaac cagttctaca 6661 cacttgcccc catgggaaat gggacggggc gtagacgtgc attataatgg ctggagcttt 6721 ctttgctgga ttggcatctg acgtccttgg ctctggactt ggttccctaa tcaatgctgg 6781 ggccggggcc atcaaccaaa aagttgaatt tgaaaataac aggaaattgc aacaagcttc 6841 tttccagttt agcagcaatc tacaacaggc ttcctttcaa catgacaaag agatgctcca 6901 agcacaaatt gaggccacca aaaagttgca acaggaaatg atgagagtta aacaagcaat 6961 gctcctagag ggtgggttct ctgagacaga tgcagcccgt ggggcaatca acgcccccat 7021 gacaaaaact ttggactgga gcgggacaag gtactgggct cccgatgcta ggattacaac 7081 atataatgca ggccgctttc ccacccctca actctcgggg gcaccaccag gaagagcaaa 7141 tctcagggct actgtccccg cccggggttc ctccagtacg tcttctaact cttctattgc 7201 tacttctgtg tattcaaatc aaaccacctc aacgagactt ggttctacag ctggttctgg 7261 taccagtgtc tcgagcctcc cgtcaactgc aaggactagg agctgggttg aggatcaaaa 7321 taggagtttg tcacctttct tgaggggggc tcacaacatc tcgtttgtca ccccaccatc 7381 tagcagatcc tctagccaag gcacagtctc aaccgtgccc aaagaagttt tggactcctg 7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgca agcgagggga 7501 gtcacgggtg taatgtgaaa agacaaaaat tgattatctt tctcttcttt agtgtcttt //