Typing tool
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Typing tool
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Complete norovirus genomes
| KC294198 | GI.6 | |
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| GI.P11 |
ORF1: 1..1659
ORF2: 1643..3265
ORF3: 3265..3894
LOCUS KC294198 4012 bp RNA linear VRL 09-JUL-2013
DEFINITION Norovirus rat/GI/KS12/1305/DNK isolate KS12/1305 RNA dependent RNA
polymerase gene, partial cds; and VP1 capsid protein and small
basic protein genes, complete cds.
ACCESSION KC294198
VERSION KC294198.1
KEYWORDS .
SOURCE Norovirus rat/GI/KS12/1305/DNK
ORGANISM Norovirus rat/GI/KS12/1305/DNK
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4012)
AUTHORS Wolf,S., Reetz,J., Johne,R., Heiberg,A.C., Petri,S., Kanig,H. and
Ulrich,R.G.
TITLE The simultaneous occurrence of human norovirus and hepatitis E
virus in a Norway rat (Rattus norvegicus)
JOURNAL Arch. Virol. 158 (7), 1575-1578 (2013)
PUBMED 23443935
REFERENCE 2 (bases 1 to 4012)
AUTHORS Wolf,S., Reetz,J., Johne,R., Heiberg,A.-C., Petri,S., Kanig,H. and
Ulrich,R.
TITLE Direct Submission
JOURNAL Submitted (06-DEC-2012) Department of Biology, Institute of
Microbiology, Dresden University of Technology, Zellescher Weg 20b,
Dresden, Saxony 01062, Germany
COMMENT ##Assembly-Data-START##
Assembly Method :: Genious v. 5.2
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4012
/organism="Norovirus rat/GI/KS12/1305/DNK"
/mol_type="genomic RNA"
/isolate="KS12/1305"
/isolation_source="intestinal content"
/host="rat"
/db_xref="taxon:1302373"
/country="Denmark"
/PCR_primers="fwd_name: p774, fwd_seq:
accacaccaggngaytgygg, rev_name: pVN, rev_seq:
gctggagtctagatttttttttttttttttttttttttvn"
CDS <1..1659
/codon_start=1
/product="RNA dependent RNA polymerase"
/protein_id="AGH06681.1"
/translation="DCGAPYVYKRANDWVVCGVHAAATKSGNTVVCAVQASEGETTLE
GGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVYEPAYLGGRDPRVSGGPSL
QQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMDTPVPWSYSDACQSLDKTT
SSGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQAKSMKPMYTAALKDELVKPEKV
YQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPIKVGMNSIEDGPLIYAEHS
KYKYHFDADYTAWTQTQNRQIMTESFSIMCRLTASPELASVVAQDLLAPSEMDVGDYV
IRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMSYFSFYGDDEIVST
DIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLVFLRRTISRDAAGFQGRLD
RASIERQIYWTRGPNHSDPFETLVPHQQRKIQLISLLGEASLHGEKFYRKISSKVIQE
IKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
CDS 1643..3265
/codon_start=1
/product="VP1 capsid protein"
/protein_id="AGH06682.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQNQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQSSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
CDS 3265..3894
/note="ORF3"
/codon_start=1
/product="small basic protein"
/protein_id="AGH06683.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR"
ORIGIN
1 gattgtggag ctccctatgt ctataagaga gcaaatgact gggtggtttg tggtgtgcac
61 gctgctgcca ctaaatcagg caacacggta gtgtgcgccg tccaggctag tgaaggggaa
121 accacacttg aggggggtga caaaggtcac tatgccggac atgagataat caagcatgga
181 tgtgggccag ccctgtcaac caaaacaaag ttctggaaat cgtcccctga accactaccc
241 cctggagtct atgaacctgc atacctcggt ggccgggatc caagagtgag tggtggcccc
301 tcgctccaac aggtattacg ggatcagtta aagccatttg ctgagccacg ggggcgtatg
361 ccggaaccag gtctcctgga ggccgcagtt gagactgtga cctcatcact ggagcaggtt
421 atggataccc cagtgccgtg gagttacagc gatgcatgtc aatccctaga taaaactact
481 agttctggtt tcccccacca caagaagaag aatgatgatt ggaacggcac cgccttcatt
541 agagagttgg gagagcaggc agcgcacgcc aataatatgt acgaacaagc taagagcatg
601 aagcccatgt acacggcggc gcttaaggat gaattagtga aaccagaaaa agtgtaccaa
661 aaagtgaaga agcgcttgct ttggggggca gatctaggaa cagtgatccg ggccgcgcga
721 gcctttggcc cattctgtga tgccataaag tcccacacaa ttaaattacc tatcaaagtt
781 ggaatgaatt caatcgagga tgggccatta atttatgcag agcattcaaa atataaatat
841 cactttgatg cagactatac ggcttggact caaacacaaa ataggcaaat tatgactgaa
901 tcattctcaa tcatgtgtcg gctgactgct tctccagaat tggcctcagt ggtggcacaa
961 gatctgcttg caccctcaga aatggacgtt ggtgactacg tcataagagt gaaggaaggc
1021 ctcccatccg gctttccatg cacatcacag gtcaatagca taaaccattg gttgataact
1081 ttgtgcgccc tctctgaggt gactggcctg tcaccagatg ttatccagtc catgtcatac
1141 ttttctttct atggtgatga tgaaatagtt tctactgaca tagaatttga cccagcaaag
1201 ctgacacaag tccttaaaga gtacggcctc aaacccaccc gccctgacaa gagtgaaggt
1261 ccaataattg tgaggaagag tgtggatggc ctggtcttct tacgtcgcac catttcccgc
1321 gacgccgcgg ggttccaggg gcgactggac cgagcatcca ttgaaaggca gatctactgg
1381 accagagggc ccaatcactc agaccccttt gaaaccttgg tgccccacca gcaaagaaaa
1441 atccagctga tatcactgtt aggtgaggcc tcattgcatg gtgaaaaatt ctacaggaag
1501 atctcaagca aagtcatcca agagattaag acagggggcc ttgaaatgta tgtgccaggg
1561 tggcaggcca tgttccgctg gatgcggttc cacgaccttg gcctgtggac aggagatcgc
1621 aatctcctgc ccgaattcgt aaatgatgat ggcgtctaag gacgccccaa catcccctga
1681 tggcgccagt ggcgccggcc agctggtacc ggaggctaat acagctgagc aaatttcaat
1741 ggaccctgtt gcgggtgctt caacagcagt cgcgacggct gggcaagtta atatgattga
1801 cccatggatt tttaataact ttgtccaggc acctcaagga gaattcacta tttcccctaa
1861 taataccccc ggtgacattt tgtttgattt acaactagga ccccacctta atccatttct
1921 agcccatctc tcacagatgt acaatggttg ggtcggcaat atgcgtgtgc gcatactgtt
1981 ggccgggaat gcctttacag ctggaaagat aatcatttgc tgtgtccccc ctggttttga
2041 tgctagaata ctcacaatag ctcaagcaac tcttttccca cacttaattg ctgatgtaag
2101 gacccttgag cctgtggagc ttcctttgga ggatgtgcgc aatgttctct tccacaacag
2161 tagccaaccg cagccaacaa tgcggctggt agctatgttg tacactcccc tccgcactgg
2221 tggtggttcc ggaggcactg atgcctttgt ggtggcgggt agggtgctta cgtgccccgc
2281 ccccgacttt agttttctgt ttcttgtccc cccttccgtt gaacaaaaga ccagagtttt
2341 cagtgtcccc aatatacccc tgaaggatct ctcaaattcc cgtgtccctg tgcctgtaca
2401 gggcatgttt atgtccccag atgttaatca gtcagtccag tttcagaatg gacgctgcca
2461 aattgatggc caactccaag gcactactcc agtctcgctc agccaactct gcaagattag
2521 gggtaaaact tctagtaatg ctagggtgct caacttaagt gaggtagatg gcacaccctt
2581 catcccactt gaatcaccag cgccagttgg ttttcccgac ttgggaggtt gtgactggca
2641 tgtaaatttc actttccagg ctcaaaatca ggacccatct caaagtgtaa cctttgcaac
2701 taatgatgcc agctttgtcc cctatctagg tagtatctct cctcacaatg ggggagattt
2761 tcatgcaggc gacatcatag gtagccttgg ttggatttca gccccgtctg ataattcaca
2821 acttaatgtt tggacaatac caaagtatgg atctagtctc ccagatgtca ctcatcttgc
2881 ccctgctgtg ttccccccag gctttgggga ggtgatcttg tacttctact ctaccttccc
2941 gggttctgga caatccagcc aacttcaagt cccatgtttg ttgcctcagg agttcatcac
3001 ccacttctgt aacgaacagg ctcccatcgc tggggaggcc gccctcctcc actacgtgga
3061 ccctgatacg gggcgaaact tgggggaatt taaactttac cctgatgggt ttatgacctg
3121 tgtccccaat agtgttagta gtggccctca aacccttcct atcaatggag tctttgtctt
3181 tgtttcatgg gtatctagat tctatcaact caagcctgtg ggaacggcct cagcggctag
3241 aaggcttgga ttgcggcgca tataatggcc caagccgtca tcggtgccat agccgcatct
3301 gccgctggta gcatactagg ggcaggcata caggctggtg ctgaggctgg tctccaggct
3361 caacggtatc agcaggatct gcagttgcaa caaaattctt tcaagcatga taaggaaatg
3421 ttaggctacc aagttcaggc tagtaatgct cttttagcta agaatcttaa cactagatat
3481 gctcttctgc aggcaggggg cctatctagc gctgatgctg ctcgggcagt ggctggtgct
3541 cccgtcaccc gtatagtgga ctggaatggc acgcgcattg cagcgcccac ctcaagcacc
3601 actacactca gatctggtgg ttttatggct gtccctatac cattgtcttc aaagaccaag
3661 caaccagtga tgtctgggca ggataatcca aattatgctg cttcttccat ctctagaact
3721 gcttcatggg tgcaatctca aaattctatg aggtctgttt ctccttttca cagtgatgct
3781 ctgagaaccg tttgggttac accacccggt tcatcatcaa cttcgtctgt gcaatctagt
3841 ttctatggtg tttttaatac agatagattg cctctgttcg caaacagaag gtaataaaat
3901 tttgtaatag gatgccagtg ggcaccatat tcagatttga tttttaattg gattgtttta
3961 attaaaattt gggcttaatt ggtgttaaaa aaaaaaaaaa aaaaaaaaaa aa
//