Typing tool
|
Complete norovirus genomes
KC013592 | GII.4 US95 | ||
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GII.P4 US95 |
ORF1: 5..5104 ORF2: 5085..6704 ORF3: 6704..7510LOCUS KC013592 7556 bp RNA linear VRL 11-MAR-2013 DEFINITION Norovirus Hu/GII.4/HS191/2004/USA, complete genome. ACCESSION KC013592 VERSION KC013592.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/HS191/2004/USA ORGANISM Norovirus Hu/GII.4/HS191/2004/USA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7556) AUTHORS Sosnovtsev,S.V., Bok,K., Wang,Q., Saif,L.J. and Green,K.Y. TITLE Complete Genome Sequence of GII.4 Human Norovirus HS191 JOURNAL Genome Announc 1 (1), E00169-12 (2013) PUBMED 23409259 REFERENCE 2 (bases 1 to 7556) AUTHORS Sosnovtsev,S.V., Bok,K., Wang,Q., Saif,L.J. and Green,K.Y. TITLE Direct Submission JOURNAL Submitted (26-OCT-2012) LID, NIAID/NIH, 50 South Drive, B50/R6314, Bethesda, MD 20892, USA COMMENT ##Assembly-Data-START## Assembly Method :: Sequencher v. 4 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7556 /organism="Norovirus Hu/GII.4/HS191/2004/USA" /mol_type="genomic RNA" /strain="Hu/GII.4/HS191/2004/USA" /host="Homo sapiens" /db_xref="taxon:1268361" /country="USA" /collection_date="2004" CDS 5..5104 /note="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="AFZ84662.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEIVVSYSVKDGVSGLPELSTVRQPE EANTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLILGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGESFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK LRPLNILNILASCDWTFAGMVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLKACKDLGAYGLEILKLVMKWFFP KKDEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPDLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM PDLKQALKDISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSASVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTGEATNKDGC LKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVAGMILEEGAPEG TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRENDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTVINVLEQTIDPPEKWSFTQACASLDKTTSSGHPHHMRKNDCW NGDSFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFKISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6704 /note="ORF2" /codon_start=1 /product="VP1" /protein_id="AFZ84663.1" /translation="MKMASNDASPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT QLSAVNICTFRGDVTHIAGSHDYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTREDGSTRAHKATVSTGSVHFTPKLGSVQYTTDTNNDFQTGQNTKFTPVGVIQDG NNHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC LLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGPHDLVI PPNGYFRFDSWVNQFYTLAPMGNGAGRRRVL" CDS 6704..7510 /note="ORF3" /codon_start=1 /product="VP2" /protein_id="AFZ84664.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRNNLRATVPARGSSSTLS SIPTATSVYSNQTVSTRLGSSAGSGTSVSSLPSTARTRSWVEDQNKNLSPFMRGALNT SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgccaaca gcaacaacga 61 caccgcaaaa tcttcaagcg acggagtgct ttctagcatg gctgtcactt ttaaacgagc 121 cctcggggcg cggcctaaac agcccccccc gagggaaata ccacaaagac ccccacgacc 181 acccacccca gaactggtca aaaagatccc ccctcccccg cccaacgggg aggatgaaat 241 agtggtttct tatagtgtca aagatggcgt ttccggtttg cctgagcttt ccaccgtcag 301 gcaaccggaa gaagccaaca cggccttcag tgtcccccca ctcaaccaga gggaaaatag 361 agatgctaag gagccattga ctggaacaat tctggaaatg tgggatgggg agatctacca 421 ttacggccta tatgtggagc gaggtcttat acttggtgtg cacaaaccac cagctgccat 481 tagcctcgcc aaggtcgagc tgacaccact ctccttgttt tggagacctg tgtatactcc 541 ccagtatctc atttctccag acactctcaa gaaattacac ggagaatcgt ttccctacac 601 agcctttgac aacaattgtt atgccttctg ttgctgggtc ttggacctaa acgactcgtg 661 gctgagtagg agaatgatcc agagaacaac cggtttcttc agaccctacc aagattggaa 721 taggaaaccc ctccccacta tggatgattc caaattaaag aaggtagcta atatattcct 781 gtgtgctcta tcttcactat tcaccaggcc cataaaagac ataataggga agctaaggcc 841 tcttaacatc cttaacatct tagcctcatg tgattggact ttcgcaggca tggtggaatc 901 cttgatactc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactcggtg attacgagtt acaaggaccc gaggaccttg cagtggaact 1021 cgttcctgta gtgatggggg gaattggtct ggtgctagga tttaccaaag agaagattgg 1081 aaaaatgttg tcatctgctg catccacctt aaaagcttgt aaagatcttg gtgcatacgg 1141 gctggaaatc ctaaagttag tcatgaagtg gttcttccca aagaaagatg aagcaaatga 1201 actggctatg gtgagatcca tcgaggatgc agtgctggat ctcgaggcaa ttgaaaacaa 1261 ccatatgacc accttgctca aagacaaaga cagtctggca acctacatga ggacccttga 1321 ccttgaggag gagaaagcca gaaagctctc aaccaagtcc gcatcacctg acatcgtggg 1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgt tccctggtgc atcgagcgaa 1441 ggaggagctt tccagcagac cgagacctgt tgtcttgatg atatcaggca gaccaggaat 1501 agggaagacc caccttgcta gggaggtggc caagagaatc gcagcctccc tcacaggaga 1561 ccagcgcgta ggcctcgtcc cacgcaatgg cgtcgatcac tgggatgcat acaaggggga 1621 gagggtcgtc ctatgggacg actatgggat gagcaatccc atccacgatg ccctcaggtt 1681 gcaagaactc gctgacactt gccccctcac tctaaactgt gacaggattg agaacaaagg 1741 aaaggtcttt gacagtgatg tcataattat caccactaac ctggccaacc cagcaccact 1801 ggactatgtc aactttgagg catgctcgag gcgcatcgat ttcctcgtgt atgcagaagc 1861 ccctgaagtc gaaaaggcga aacgcgactt cccaggccaa cctgacatgt ggaagaacgc 1921 tttcagttct gatttctcac acataaaact aacactggct ccacagggtg gcttcgataa 1981 gaacgggaac accccacacg gaaagggcgt catgaagact ctcaccactg gctcccttat 2041 tgcccgggca tcagggctac tccatgagag gctagatgag tttgaactac agggcccaga 2101 tctcaccacc ttcaactttg atcgcaacaa agtgcttgcc tttaggcagc ttgctgctga 2161 aaacaaatac gggttgatgg acacaatgaa agttggaagg cagctcaagg atgtcagaac 2221 catgccagat cttaaacaag cactcaaaga tatctcaatc aagaagtgcc agatagtgta 2281 cagtggttgc acctatacac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt 2341 tcagagcgcc tccgtgcaga ccaacaacga gctggccggc gccctacacc atctaaggtg 2401 cgccagaatc aggtactacg tcaagtgtgt ccaggaggcc ctgtattcca tcatccaaat 2461 tgctggagct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aagacctctg 2521 gtccaagcca caagtggaag acacagggga ggctaccaac aaggacgggt gcctaaaacc 2581 taaagatgat gaggagttcg tcatttcatc cgacgatatc aaaactgagg gcaagaaagg 2641 gaagaacaag actggccgcg gcaagaagca cacagccttc tcgagcaaag gtctcagtga 2701 tgaggagtac gacgagtaca agagaattag agaagaaaga aatggcaagt actccataga 2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgaccga 2821 ggaagacttc tgcgaagagg aggaggccaa gattcggcaa aggattttca ggccaacaag 2881 gaaacaacgc aaggaggaaa gggcctctct cggtttagtc acaggttctg aaatcaggaa 2941 aaggaaccca gatgatttca agcccaaggg gaaactgtgg gctgatgatg acagaagtgt 3001 ggactacaat gagaaactca gttttgaggc cccaccaagc atctggtcga ggatagtcaa 3061 ctttggttca ggttggggct tttgggtctc tcccagtctg ttcataacat caacccatgt 3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aagcaaattc agatacacaa 3181 atcaggcgaa ttctgtcgct tgaggttccc aaaaccaatc aggactgatg tggcgggcat 3241 gatcttagaa gaaggtgcgc ccgaaggcac cgtggtcaca ctactcatca agagacctac 3301 tggagaactt atgcccctag cagctagaat ggggacccat gcaaccatga aaattcaagg 3361 gcgcactgtt ggaggtcaga tgggcatgct tctgacagga tccaacgcca aaagcatgga 3421 cctaggcacc acaccaggtg actgcggctg cccctacatc tacaagaggg aaaatgacta 3481 tgtggttatt ggggtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac 3541 ccaggggagt gagggggagg ctacacttga aggtggtgac agtaagggaa catactgtgg 3601 tgcaccaatc ctaggcccag ggagtgcccc aaaactcagc accaagacca aattctggag 3661 atcgtccact acaccactcc cacctggcac ctatgaacca gcctatcttg gtggtaagga 3721 ccccagagtc aagggtggcc cttcattgca acaagttatg agggatcagt tgaaaccatt 3781 tacagagccc aggggcaaac caccaaagcc aagtgtgttg gaagctgcca agaaaaccgt 3841 catcaatgtc cttgaacaaa caatcgaccc acccgagaaa tggtcattca cgcaagcttg 3901 cgcgtccctt gataagacta cttccagtgg ccacccgcac cacatgcgga aaaacgactg 3961 ctggaacggg gattccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat 4021 gttcgaagag gggaagaaca tgaccccagt ttacacaggt gcgcttaagg atgagttagt 4081 taaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggacttagc 4141 gaccatgatc cggtgcgctc gagcattcgg aggcttaatg gatgaactca aagcgcactg 4201 tgttacactt cctatcagag ttggtatgaa tatgaatgag gacggcccca tcatcttcga 4261 gagacattcc aggtacaaat atcactatga tgctgactac tctcggtggg attcaacaca 4321 acagagagcc gtgttggcag cagccctaga aatcatggtt aaattctcct cagaaccaca 4381 tttggctcag gtggtcgcag aagaccttct ttctcctagc gtggtggatg tgggtgactt 4441 caaaatatca atcaatgagg gtctcccctc tggggtgccc tgcacctccc aatggaactc 4501 catcgcccac tggcttctca ctctctgtgc gctctctgaa gttacaaact tgtcccctga 4561 catcatacag gctaattccc tcttctcctt ttatggtgat gatgaaattg ttagtacaga 4621 tataaagttg gacccagaga aattgacagc aaaactcaag gaatacgggc tgaaaccaac 4681 ccgccctgac aaaactgaag ggccccttgt tatttctgaa gatttaaatg gtctgacctt 4741 cctgcggagg actgtgaccc gcgacccagc tggttggttt ggaaaattgg agcagagttc 4801 aatactcaga caaatgtact ggactagggg tcccaaccat gaagacccat ctgaaacaat 4861 gattccacat tcccaaagac ccatacaatt gatgtcccta ctgggagagg ccgcactcca 4921 cggcccatca ttctacagca aaattagcaa gttggttatt gcagagctaa aagaaggtgg 4981 catggatttt tacgtgccca gacaagagcc aatgtttaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 atgacgccag cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gttggtgccg ctatcgcggc acctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag 5281 tatcccctag aaacgctccg ggtgagatac tatggagcgc gcccttgggc cctgatttga 5341 acccctacct ttctcatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc 5401 aggtaatcct cgcggggaac gcgttcaccg ccgggaaaat catatttgca gcagtcccac 5461 caaattttcc aactgaaggc ttgagcccca gccaggttac tatgttcccc catataatag 5521 tagatgttag gcaattggaa cccgtgttga tccccttacc tgatgttagg aataacttct 5581 atcattataa ccaatcaaat gattctacca ttaaattgat agcaatgctg tatacaccac 5641 ttagggctaa taatgctggg gatgatgtct tcacagtctc ttgtcgagtc ctcacgaggc 5701 catcccccga ttttgatttc atattcttgg tgccacccac agttgaatca agaactaaac 5761 cattcaccgt cccaatctta actgttgagg aaatgtccaa ctcaagattc cccattcctt 5821 tggaaaagtt gtacacgggt cccagcagtg cttttgttgt ccaaccacaa aatggcaggt 5881 gcacgactga cggcgtgctc ttaggcacta cccagctgtc tgctgtcaac atctgcacct 5941 tcagagggga tgtcacccac attgcaggca gtcatgacta tacaatgaat ttggcttctc 6001 aaaattggaa caattatgac ccaacagaag aaatcccagc ccctctggga actccagatt 6061 tcgtgggaaa gatccaaggc atgctcaccc aaaccacaag agaggatggc tcgacccgcg 6121 cccacaaagc cacagtgagc actgggagtg tccactttac tccaaagctg ggcagtgttc 6181 aatacaccac tgacacaaac aatgattttc aaactggcca aaacacgaaa ttcaccccag 6241 tcggcgtcat ccaggacggt aataaccatc aaaatgaacc ccaacaatgg gtacttccaa 6301 attactcagg tagaactggt cataatgtgc acctagctcc tgccgttgcc cccactttcc 6361 cgggtgagca acttctcttc tttaggtcca ctatgcccgg gtgtagcggg tatcccaaca 6421 tgaatctgga ttgcctactc ccccaggaat gggtgcagca cttctaccaa gaagcagccc 6481 cagcacaatc tgatgtggct ctgctgagat ttgtgaatcc agacacaggt agggttctgt 6541 ttgagtgcaa gctccataaa tcaggctatg tcacagtggc tcacactggc ccacatgatt 6601 tggttatccc ccccaatggt tactttagat ttgattcctg ggtcaaccag ttctacacac 6661 ttgcccccat gggaaatgga gcggggcgca gacgtgtatt ataatggctg gagctttctt 6721 tgctggattg gcatctgatg tccttggctc tggacttggt tccctaatca atgctggggc 6781 tggggccatc aaccaaaaag ttgaatttga aaataacaga aaattgcaac aagcttcttt 6841 ccaatttagt agcaatctgc aacaggcttc cttccaacat gataaggaga tgctccaagc 6901 acaaattgag gccactaaga aattgcaaca gggcatgatg aaggttaaac aggcgatgct 6961 cctagagggt ggattctctg aaacagatgc agcccgtggg gcaattaacg cccccatgac 7021 aaaggctctg gactggagcg gaacaaggta ctgggctcct gatgccagga ccacaacata 7081 caatgcaggc cgcttttcca cccctcaacc ttcgggggca ttgccaggga gaaataacct 7141 tagggccact gtccccgctc ggggctcctc tagcacactt tctagcattc ccactgctac 7201 ttctgtgtat tcaaatcaaa ctgtttcaac gagacttggt tcttcagctg gttctggcac 7261 cagtgtctcg agtcttccgt caactgcaag gactaggagc tgggttgagg atcaaaacaa 7321 aaatttgtca cctttcatga ggggggctct caacacatca ttcgtcaccc caccatctag 7381 tagatcctct agccaaggca cagtctcaac cgtgcctaaa gaaattttgg actcctggac 7441 tggcgctttc aacacgcgca ggcagcctct cttcgctcac attcgcaagc gaggggagtc 7501 acgggtgtaa tgtgaaaaga caaaattgat tatctttcct ttctttagtg tctttt //