Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| KC013592 | GII.4 US95 | |
|
|---|---|---|---|
| GII.P4 US95 |
ORF1: 5..5104
ORF2: 5085..6704
ORF3: 6704..7510
LOCUS KC013592 7556 bp RNA linear VRL 11-MAR-2013
DEFINITION Norovirus Hu/GII.4/HS191/2004/USA, complete genome.
ACCESSION KC013592
VERSION KC013592.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/HS191/2004/USA
ORGANISM Norovirus Hu/GII.4/HS191/2004/USA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7556)
AUTHORS Sosnovtsev,S.V., Bok,K., Wang,Q., Saif,L.J. and Green,K.Y.
TITLE Complete Genome Sequence of GII.4 Human Norovirus HS191
JOURNAL Genome Announc 1 (1), E00169-12 (2013)
PUBMED 23409259
REFERENCE 2 (bases 1 to 7556)
AUTHORS Sosnovtsev,S.V., Bok,K., Wang,Q., Saif,L.J. and Green,K.Y.
TITLE Direct Submission
JOURNAL Submitted (26-OCT-2012) LID, NIAID/NIH, 50 South Drive, B50/R6314,
Bethesda, MD 20892, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Sequencher v. 4
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7556
/organism="Norovirus Hu/GII.4/HS191/2004/USA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/HS191/2004/USA"
/host="Homo sapiens"
/db_xref="taxon:1268361"
/geo_loc_name="USA"
/collection_date="2004"
CDS 5..5104
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AFZ84662.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEIVVSYSVKDGVSGLPELSTVRQPE
EANTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLILGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGMVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLKACKDLGAYGLEILKLVMKWFFP
KKDEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPDLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM
PDLKQALKDISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSASVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTGEATNKDGC
LKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVAGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRENDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTVINVLEQTIDPPEKWSFTQACASLDKTTSSGHPHHMRKNDCW
NGDSFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6704
/note="ORF2"
/codon_start=1
/product="VP1"
/protein_id="AFZ84663.1"
/translation="MKMASNDASPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICTFRGDVTHIAGSHDYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTREDGSTRAHKATVSTGSVHFTPKLGSVQYTTDTNNDFQTGQNTKFTPVGVIQDG
NNHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC
LLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGPHDLVI
PPNGYFRFDSWVNQFYTLAPMGNGAGRRRVL"
CDS 6704..7510
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="AFZ84664.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRNNLRATVPARGSSSTLS
SIPTATSVYSNQTVSTRLGSSAGSGTSVSSLPSTARTRSWVEDQNKNLSPFMRGALNT
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgccaaca gcaacaacga
61 caccgcaaaa tcttcaagcg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcctaaac agcccccccc gagggaaata ccacaaagac ccccacgacc
181 acccacccca gaactggtca aaaagatccc ccctcccccg cccaacgggg aggatgaaat
241 agtggtttct tatagtgtca aagatggcgt ttccggtttg cctgagcttt ccaccgtcag
301 gcaaccggaa gaagccaaca cggccttcag tgtcccccca ctcaaccaga gggaaaatag
361 agatgctaag gagccattga ctggaacaat tctggaaatg tgggatgggg agatctacca
421 ttacggccta tatgtggagc gaggtcttat acttggtgtg cacaaaccac cagctgccat
481 tagcctcgcc aaggtcgagc tgacaccact ctccttgttt tggagacctg tgtatactcc
541 ccagtatctc atttctccag acactctcaa gaaattacac ggagaatcgt ttccctacac
601 agcctttgac aacaattgtt atgccttctg ttgctgggtc ttggacctaa acgactcgtg
661 gctgagtagg agaatgatcc agagaacaac cggtttcttc agaccctacc aagattggaa
721 taggaaaccc ctccccacta tggatgattc caaattaaag aaggtagcta atatattcct
781 gtgtgctcta tcttcactat tcaccaggcc cataaaagac ataataggga agctaaggcc
841 tcttaacatc cttaacatct tagcctcatg tgattggact ttcgcaggca tggtggaatc
901 cttgatactc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gattgccccc ttactcggtg attacgagtt acaaggaccc gaggaccttg cagtggaact
1021 cgttcctgta gtgatggggg gaattggtct ggtgctagga tttaccaaag agaagattgg
1081 aaaaatgttg tcatctgctg catccacctt aaaagcttgt aaagatcttg gtgcatacgg
1141 gctggaaatc ctaaagttag tcatgaagtg gttcttccca aagaaagatg aagcaaatga
1201 actggctatg gtgagatcca tcgaggatgc agtgctggat ctcgaggcaa ttgaaaacaa
1261 ccatatgacc accttgctca aagacaaaga cagtctggca acctacatga ggacccttga
1321 ccttgaggag gagaaagcca gaaagctctc aaccaagtcc gcatcacctg acatcgtggg
1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgt tccctggtgc atcgagcgaa
1441 ggaggagctt tccagcagac cgagacctgt tgtcttgatg atatcaggca gaccaggaat
1501 agggaagacc caccttgcta gggaggtggc caagagaatc gcagcctccc tcacaggaga
1561 ccagcgcgta ggcctcgtcc cacgcaatgg cgtcgatcac tgggatgcat acaaggggga
1621 gagggtcgtc ctatgggacg actatgggat gagcaatccc atccacgatg ccctcaggtt
1681 gcaagaactc gctgacactt gccccctcac tctaaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagtgatg tcataattat caccactaac ctggccaacc cagcaccact
1801 ggactatgtc aactttgagg catgctcgag gcgcatcgat ttcctcgtgt atgcagaagc
1861 ccctgaagtc gaaaaggcga aacgcgactt cccaggccaa cctgacatgt ggaagaacgc
1921 tttcagttct gatttctcac acataaaact aacactggct ccacagggtg gcttcgataa
1981 gaacgggaac accccacacg gaaagggcgt catgaagact ctcaccactg gctcccttat
2041 tgcccgggca tcagggctac tccatgagag gctagatgag tttgaactac agggcccaga
2101 tctcaccacc ttcaactttg atcgcaacaa agtgcttgcc tttaggcagc ttgctgctga
2161 aaacaaatac gggttgatgg acacaatgaa agttggaagg cagctcaagg atgtcagaac
2221 catgccagat cttaaacaag cactcaaaga tatctcaatc aagaagtgcc agatagtgta
2281 cagtggttgc acctatacac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt
2341 tcagagcgcc tccgtgcaga ccaacaacga gctggccggc gccctacacc atctaaggtg
2401 cgccagaatc aggtactacg tcaagtgtgt ccaggaggcc ctgtattcca tcatccaaat
2461 tgctggagct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aagacctctg
2521 gtccaagcca caagtggaag acacagggga ggctaccaac aaggacgggt gcctaaaacc
2581 taaagatgat gaggagttcg tcatttcatc cgacgatatc aaaactgagg gcaagaaagg
2641 gaagaacaag actggccgcg gcaagaagca cacagccttc tcgagcaaag gtctcagtga
2701 tgaggagtac gacgagtaca agagaattag agaagaaaga aatggcaagt actccataga
2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgaccga
2821 ggaagacttc tgcgaagagg aggaggccaa gattcggcaa aggattttca ggccaacaag
2881 gaaacaacgc aaggaggaaa gggcctctct cggtttagtc acaggttctg aaatcaggaa
2941 aaggaaccca gatgatttca agcccaaggg gaaactgtgg gctgatgatg acagaagtgt
3001 ggactacaat gagaaactca gttttgaggc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggttca ggttggggct tttgggtctc tcccagtctg ttcataacat caacccatgt
3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aagcaaattc agatacacaa
3181 atcaggcgaa ttctgtcgct tgaggttccc aaaaccaatc aggactgatg tggcgggcat
3241 gatcttagaa gaaggtgcgc ccgaaggcac cgtggtcaca ctactcatca agagacctac
3301 tggagaactt atgcccctag cagctagaat ggggacccat gcaaccatga aaattcaagg
3361 gcgcactgtt ggaggtcaga tgggcatgct tctgacagga tccaacgcca aaagcatgga
3421 cctaggcacc acaccaggtg actgcggctg cccctacatc tacaagaggg aaaatgacta
3481 tgtggttatt ggggtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac
3541 ccaggggagt gagggggagg ctacacttga aggtggtgac agtaagggaa catactgtgg
3601 tgcaccaatc ctaggcccag ggagtgcccc aaaactcagc accaagacca aattctggag
3661 atcgtccact acaccactcc cacctggcac ctatgaacca gcctatcttg gtggtaagga
3721 ccccagagtc aagggtggcc cttcattgca acaagttatg agggatcagt tgaaaccatt
3781 tacagagccc aggggcaaac caccaaagcc aagtgtgttg gaagctgcca agaaaaccgt
3841 catcaatgtc cttgaacaaa caatcgaccc acccgagaaa tggtcattca cgcaagcttg
3901 cgcgtccctt gataagacta cttccagtgg ccacccgcac cacatgcgga aaaacgactg
3961 ctggaacggg gattccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat
4021 gttcgaagag gggaagaaca tgaccccagt ttacacaggt gcgcttaagg atgagttagt
4081 taaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggacttagc
4141 gaccatgatc cggtgcgctc gagcattcgg aggcttaatg gatgaactca aagcgcactg
4201 tgttacactt cctatcagag ttggtatgaa tatgaatgag gacggcccca tcatcttcga
4261 gagacattcc aggtacaaat atcactatga tgctgactac tctcggtggg attcaacaca
4321 acagagagcc gtgttggcag cagccctaga aatcatggtt aaattctcct cagaaccaca
4381 tttggctcag gtggtcgcag aagaccttct ttctcctagc gtggtggatg tgggtgactt
4441 caaaatatca atcaatgagg gtctcccctc tggggtgccc tgcacctccc aatggaactc
4501 catcgcccac tggcttctca ctctctgtgc gctctctgaa gttacaaact tgtcccctga
4561 catcatacag gctaattccc tcttctcctt ttatggtgat gatgaaattg ttagtacaga
4621 tataaagttg gacccagaga aattgacagc aaaactcaag gaatacgggc tgaaaccaac
4681 ccgccctgac aaaactgaag ggccccttgt tatttctgaa gatttaaatg gtctgacctt
4741 cctgcggagg actgtgaccc gcgacccagc tggttggttt ggaaaattgg agcagagttc
4801 aatactcaga caaatgtact ggactagggg tcccaaccat gaagacccat ctgaaacaat
4861 gattccacat tcccaaagac ccatacaatt gatgtcccta ctgggagagg ccgcactcca
4921 cggcccatca ttctacagca aaattagcaa gttggttatt gcagagctaa aagaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgtttaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccag cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gttggtgccg ctatcgcggc acctgtagcg ggccaacaaa
5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag
5281 tatcccctag aaacgctccg ggtgagatac tatggagcgc gcccttgggc cctgatttga
5341 acccctacct ttctcatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc
5401 aggtaatcct cgcggggaac gcgttcaccg ccgggaaaat catatttgca gcagtcccac
5461 caaattttcc aactgaaggc ttgagcccca gccaggttac tatgttcccc catataatag
5521 tagatgttag gcaattggaa cccgtgttga tccccttacc tgatgttagg aataacttct
5581 atcattataa ccaatcaaat gattctacca ttaaattgat agcaatgctg tatacaccac
5641 ttagggctaa taatgctggg gatgatgtct tcacagtctc ttgtcgagtc ctcacgaggc
5701 catcccccga ttttgatttc atattcttgg tgccacccac agttgaatca agaactaaac
5761 cattcaccgt cccaatctta actgttgagg aaatgtccaa ctcaagattc cccattcctt
5821 tggaaaagtt gtacacgggt cccagcagtg cttttgttgt ccaaccacaa aatggcaggt
5881 gcacgactga cggcgtgctc ttaggcacta cccagctgtc tgctgtcaac atctgcacct
5941 tcagagggga tgtcacccac attgcaggca gtcatgacta tacaatgaat ttggcttctc
6001 aaaattggaa caattatgac ccaacagaag aaatcccagc ccctctggga actccagatt
6061 tcgtgggaaa gatccaaggc atgctcaccc aaaccacaag agaggatggc tcgacccgcg
6121 cccacaaagc cacagtgagc actgggagtg tccactttac tccaaagctg ggcagtgttc
6181 aatacaccac tgacacaaac aatgattttc aaactggcca aaacacgaaa ttcaccccag
6241 tcggcgtcat ccaggacggt aataaccatc aaaatgaacc ccaacaatgg gtacttccaa
6301 attactcagg tagaactggt cataatgtgc acctagctcc tgccgttgcc cccactttcc
6361 cgggtgagca acttctcttc tttaggtcca ctatgcccgg gtgtagcggg tatcccaaca
6421 tgaatctgga ttgcctactc ccccaggaat gggtgcagca cttctaccaa gaagcagccc
6481 cagcacaatc tgatgtggct ctgctgagat ttgtgaatcc agacacaggt agggttctgt
6541 ttgagtgcaa gctccataaa tcaggctatg tcacagtggc tcacactggc ccacatgatt
6601 tggttatccc ccccaatggt tactttagat ttgattcctg ggtcaaccag ttctacacac
6661 ttgcccccat gggaaatgga gcggggcgca gacgtgtatt ataatggctg gagctttctt
6721 tgctggattg gcatctgatg tccttggctc tggacttggt tccctaatca atgctggggc
6781 tggggccatc aaccaaaaag ttgaatttga aaataacaga aaattgcaac aagcttcttt
6841 ccaatttagt agcaatctgc aacaggcttc cttccaacat gataaggaga tgctccaagc
6901 acaaattgag gccactaaga aattgcaaca gggcatgatg aaggttaaac aggcgatgct
6961 cctagagggt ggattctctg aaacagatgc agcccgtggg gcaattaacg cccccatgac
7021 aaaggctctg gactggagcg gaacaaggta ctgggctcct gatgccagga ccacaacata
7081 caatgcaggc cgcttttcca cccctcaacc ttcgggggca ttgccaggga gaaataacct
7141 tagggccact gtccccgctc ggggctcctc tagcacactt tctagcattc ccactgctac
7201 ttctgtgtat tcaaatcaaa ctgtttcaac gagacttggt tcttcagctg gttctggcac
7261 cagtgtctcg agtcttccgt caactgcaag gactaggagc tgggttgagg atcaaaacaa
7321 aaatttgtca cctttcatga ggggggctct caacacatca ttcgtcaccc caccatctag
7381 tagatcctct agccaaggca cagtctcaac cgtgcctaaa gaaattttgg actcctggac
7441 tggcgctttc aacacgcgca ggcagcctct cttcgctcac attcgcaagc gaggggagtc
7501 acgggtgtaa tgtgaaaaga caaaattgat tatctttcct ttctttagtg tctttt
//