Typing tool
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Typing tool
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Complete norovirus genomes
| JX989075 | GII.6 | |
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| GII.P6 |
ORF1: 5..5098
ORF2: 5079..6722
ORF3: 6722..7498
LOCUS JX989075 7550 bp RNA linear VRL 09-MAY-2014
DEFINITION Norovirus Hu/GII.6/GZ2010-L96/Guangzhou/CHN/2011, complete genome.
ACCESSION JX989075
VERSION JX989075.1
KEYWORDS .
SOURCE Norovirus Hu/GII.6/GZ2010-L96/Guangzhou/CHN/2011
ORGANISM Norovirus Hu/GII.6/GZ2010-L96/Guangzhou/CHN/2011
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7550)
AUTHORS Xue,L., Wu,Q., Kou,X., Zhang,J. and Guo,W.
TITLE A simple and novel method for GII norovirus genome clone with
generic primers
JOURNAL J. Appl. Microbiol. 115 (2), 613-620 (2013)
PUBMED 23647661
REFERENCE 2 (bases 1 to 7550)
AUTHORS Xue,L., Wu,Q., Kou,X. and Zhang,J.
TITLE Rational design of generic primers used for genome clone of GII
Norovirus
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 7550)
AUTHORS Xue,L., Wu,Q., Kou,X. and Zhang,J.
TITLE Direct Submission
JOURNAL Submitted (21-OCT-2012) State Key Laboratory of Applied
Microbiology (Ministry-Guangdong Province Jointly Breeding Base),
South China, Guangdong Provincial Key Laboratory of Microbial
Culture Collection and Application, Guangdong Open Laboratory of
Applied Microbiology, Guangdong Institute of Microbiology, No. 100,
Xianliezhong Road, Yuexiu District, Guangzhou, Guangdong 510070,
China
COMMENT ##Assembly-Data-START##
Assembly Method :: seqman v. 7.1.0
Sequencing Technology :: 454
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7550
/organism="Norovirus
Hu/GII.6/GZ2010-L96/Guangzhou/CHN/2011"
/mol_type="genomic RNA"
/isolate="Hu/GII.6/GZ2010-L96/Guangzhou/CHN/2011"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1282430"
/country="China"
/collection_date="14-Jan-2011"
/note="genotype: GII.6"
CDS 5..5098
/note="ORF1; contains NTPase, 3A-like protein, VPg,
protease, and RdRp"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="AGC96534.1"
/translation="MKMASNDATSAFGSQNSVNDSINTTPSNREEVGAFSNIKVGLKK
MLGAVPKNTKAPSGDQHCPTVKIGSKTLVIPPEPPNGEDIVQFDAKSETVRGLPDLTT
VQNEHENTPYTVPPLSEREHRPAAEPLPGTILEMWDGEFYHYSIYVSGGKALGVHKPP
AAISLATVELTPISLYWRPVYTPNYLVHPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLCRRSISRTTGFFKPYQSWNREPLPTIDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLVGDFQLQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WSFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLINPAPLDYVNFEACSRRIDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGDNLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
VKTLEDLRVALRDVKFNECEIIYKNTKYRVSSDGKGTVSVDKVEDLASQTASEVSSAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPADTQETSEPEK
EAAQSGWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTG
TDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGIKELFGVDVKQIQIHKSGEFCRFRFPKPIRPDVSGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNESLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPSVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHIRKNDHWNG
ESFTGPLADQASKANLMYEQAKHMQPVYTAALKDELVRTDKIYKKIKKRLLWGSDLGT
MVRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRNILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPSKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVISEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPESVNEDGVE"
gene 5079..6722
/gene="VP1"
CDS 5079..6722
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="major viral capsid protein"
/protein_id="AGC96535.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQEDTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNETIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGSSVGATRAHEVHIDTTNPRYTPKLGSVLMHSESSDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGQIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
gene 6722..7498
/gene="VP2"
CDS 6722..7498
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="minor viral capsid protein"
/protein_id="AGC96536.1"
/translation="MAGAFFAGLAGDAITNGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLTAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLSRPDSQKVKINSDSASIYSSMSTAPSQST
HSMILTSGSGSSRTTSSPTVTSTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSRA
SSNGSVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac ctctgccttt ggcagtcaaa actctgtcaa
61 tgacagtatc aacaccaccc cttccaacag agaagaggtt ggtgcatttt ccaacatcaa
121 agttggactt aagaaaatgc tgggtgccgt gcctaaaaac actaaagcgc ccagcggaga
181 ccagcactgc cccacggtca agatcgggtc caaaacacta gtgatcccgc cggaaccccc
241 aaacggcgag gatattgtac agttcgacgc aaaatcagaa actgtgcgtg ggctacccga
301 cctgacgaca gtgcagaatg aacatgagaa caccccgtac acagttcctc cactaagtga
361 aagggaacac aggccagccg ctgagccact ccccggcacg atactagaga tgtgggacgg
421 tgaattctac cactactcca tctacgtcag cggaggcaaa gccttggggg tgcacaaacc
481 cccagcggct ataagcctcg cgacagtgga gctcactccc atatcccttt actggcggcc
541 tgtctacact ccaaactacc tggtccatcc agacacactg aagggccttg ctggagaaaa
601 gtttccctac acggccttta gtaacaactg ctacaatttc tgttgctggg tacttgagct
661 taacgacacg tggctttgca ggaggagtat atccaggacc accggcttct tcaagccata
721 tcagtcttgg aacagggagc ccctccccac cattgatgat ggaaaaatca aaaaggtggc
781 caatgcaatt ctctgcgcac ttggctcact attctcaaag ccaatcaaag acctactggg
841 caaactcaag ccactcaacc tgctacatct gcttgcgtcg tgtgattgga cgtttgcagg
901 tatagtagaa acagtcatct tgatggcgga actctttaat gtgttctgga ccccacctga
961 tgtttccaat ttcatagcct ccttggtggg tgattttcag ttgcaaggac ccgaggactt
1021 ggctgtggag ctggtccccg tggttatggg aggcataggg atggtcctcg gtttcactgc
1081 cgagaagatt ggccgcatgt tgtcatctgc cgcgtcaact ctaagggcat gcaaagatct
1141 agggaactat gccctggaca tactgaagct agttatgaag tggtcctttc caaagaaaga
1201 agagaaggcc gaaatggaga ccttgagggc gattgaggac gccgtattag acatggaggc
1261 aatagggaac aaccacctca caacactcct caaggacaag gacagcctca ctgcattcat
1321 gaaaacccta gacctagagg aggagaaagc aaggaaattg tcaacgaagt catcatcacc
1381 agacatcgtc ggcaccatta acgccatact ggctagaata gcagccgcta gatccctcct
1441 acacaaggcc aaggaagaga tgttcagcag aattagacca gtggttgtca tgatttcagg
1501 tagacctggc attggtaaaa cccatatggc aaggcatctg gctaagagca tagccaacac
1561 aatgagtggg gaccagagag ttggacttgt cccgcgcaac ggggttgacc actgggatgc
1621 ttacaggggg gagagagtgg tcctgtggga cgactacggt atggggaacc ctgttaaaga
1681 tgccttgaca ctgcaagaac tggccgacac ctgtccagtc accttgaatt gtgataggat
1741 tgaaaacaag gggaagatgt ttgacagtga tgtcatcata atcacgacca atttgatcaa
1801 ccctgcacct cttgattatg ttaacttcga ggcttgctcc agaagaatcg acttccttgt
1861 ctatgcagag tcaccagaaa tagaaaaggt caagagagac ttccctggtc agccagatat
1921 gtggaaagat cacttcaaac cggatttttc ccacataaag ctaactttgg ccccccaggg
1981 cgggtttgat aagaatggca acaccccaca tggtaaaggc accatgcgtt ctctgaccca
2041 ggggtctctg actgcaagag tggcgggcct tgttcatgag aggagagatg agttccagct
2101 gcaaggagat aacctacaga catacaactt tgacaccaat agggtctctg cgttcaggaa
2161 actagccgca gataacaagt atggaatcat ggagacaatg agagtgggtg cagcactcaa
2221 gaatgtcaag accttggaag acctcagagt tgctttgaga gatgtaaaat tcaatgaatg
2281 tgagatcatc tacaagaaca ccaagtaccg ggtctcatct gatggtaaag gcacagtctc
2341 tgttgacaaa gtcgaggacc tcgcttccca aaccgcaagc gaggtgagct cagccctcct
2401 caggctcaga caagccaggg ccagatatta tgtcagctgt ttccaggacc ttgtctacac
2461 tcttatacag gttgctgggg cttcatttgt cgtcaacaga atctccaaga ggttctgctg
2521 ggaaagatgg gttaaaccgg ccgataccca ggagacgagt gagcccgaga aggaagctgc
2581 ccagagtgga tgggagattg aacccaagga cacagaacca gagggtaaga agggcaagaa
2641 caagaaagga aggggcaaga aacacacagc cttctccagc aaaggcctga gtgatgaaga
2701 gtatgatgag tacaaaagga ttagggaaga aagaaatgga aagtactcca ttgaggaata
2761 ccttcaagac cgtgaccgct actacgaaga agtagcagtt gcccgagcaa cagaggagga
2821 tttctgtgaa gaggaggaag ccaagataag gcaaagaatt ttccgcccaa caaggaagca
2881 aagaaaagag gaaaggggtg tgctcggcct ggtcactggc acagatatca ggaagagaag
2941 accggatgac ttccaaccaa agggcaattt gtgggcagat gacactagga gtgtggacta
3001 caacgagaga cttgatttcg aggccccccc aagcgtgtgg tcaaggatag tcccactggg
3061 caccggctgg ggcttctggg tctcatccaa tctcctaatc acaacaacac atgttctgcc
3121 caagggtatt aaggaacttt ttggcgttga cgtcaaacaa atccaaatcc acaaatctgg
3181 agaattttgc aggtttagat tcccaaaacc aatcagacca gacgtctcag ggcttgtgtt
3241 ggaagagggt gcgccagagg gcactgtctg ctccatactc gtgaagagac caacaggtga
3301 gatgatccct ctagcggtga ggatgggcac acatgcatct atgaaaatcc agggcaggac
3361 tgttggtgga caaatgggca tgctccttac tggggcaaac gcaaagaaca tggaccttgg
3421 aaccggccca ggggattgcg gttgccctta tatttacaag agaggcaatg acatagtcgt
3481 ggcaggtgtc cataccgcgg cggcccgagg aggcaacaca gtcatctgtg ccactcaggg
3541 gcaggacggg gaagcagttc tcgaagggaa tgagagcctt ggcacttact gtggtgcccc
3601 aatcctaggt cctggcaagg cgcccaagct cagtacgaag accaagtttt ggcgctcatc
3661 gcctgatgcc ctgccacccg gcacatatga acctgcctac ctaggaggca aagaccccag
3721 agtggagaag ggtccttccc tgcagcaagt catgagggat caattaaaac ctttcacaga
3781 acccagaggt aaaccaccaa gaccctcagt cctggaagaa gctaagaaga cagtaatgaa
3841 cgtcctggaa cagaccattg accctgctaa accatggact tactcacaag catgtgcttc
3901 cctggataag accacttcca gtggcagccc ccaccacatc agaaagaacg accattggaa
3961 tggagagtct tttacaggcc ctctcgcaga ccaagcatcc aaagctaatc tcatgtatga
4021 gcaggccaaa cacatgcagc ctgtgtacac agctgcactc aaggatgagc tcgttagaac
4081 tgacaaaatt tataagaaga taaagaagag gctcctgtgg gggtcggacc ttggcacgat
4141 ggtcaggtgc gccagggcct ttggtggtct catggacagc atgaaagcaa gttgcatagc
4201 cctcccgtgt agagtgggaa tgaacatgaa tgaggatgga cccatcattt ttgacaagca
4261 ctccaaatat agataccatt atgatgctga ctactctagg tgggactcaa cccaacaaag
4321 gaacatcttg tccgccgcca tggaagtgat ggtgcggttc tccgcggagc cagaattggc
4381 acaagtagtc gcagaggacc tcttggcacc tagccagctg gacgttggcg actttgtcat
4441 ctcagttcag gaaggcctgc catcaggagt cccatgcacg tcacaatgga attcaatagc
4501 ccactggatc ttgaccttga gtgcgatggc agaggtgtca ggcctttcac cagatgttgt
4561 gcaggcccat tcctgtttct ctttctatgg tgatgatgag attgtgagca ctgacatcaa
4621 ccttgacccc tcaaaactga cacagaaact cagggagtac ggtctggtcc ccacacgacc
4681 tgacaaaact gaaggccccc tggttataac tgaggacctc accggcctaa cattcctgcg
4741 caggtcgatc gcgcgggatc ccgctgggtg gtttgggaag ctggaccaag actcaatcct
4801 cagacagttg tactggacaa gagggcccaa ccatgagaac ccatacgaaa gtatggtccc
4861 ccattcccag cgggccacac aactcatggc ccttcttgga gaagcctcac tacacggacc
4921 ccaattctac aagaaggtca gtaagatggt cataagtgag atcaagagtg gtggtctgga
4981 gttttatgtg cccagacaag aggccatgtt taggtggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga gagtgtgaat gaagatggcg tcgaatgacg
5101 ctgctccatc gaatgatggt gctgccaacc tcgtaccaga ggccaacaat gaggttatgg
5161 cacttgaacc ggtggtggga gcctcaattg cagctcctgt cgtcggtcaa cagaatataa
5221 ttgacccctg gattagagaa aattttgttc aggcaccaca gggtgagttt actgtttcac
5281 caagaaactc gcctggtgag atgcttttaa atcttgaatt aggcccagag ctcaatcctt
5341 acttgagtca tttgtcccgc atgtacaatg gttatgctgg tggcatgcag gttcaggtgg
5401 tcctagctgg gaatgcgttc acagctggta aaatcatctt tgccgccgtt ccaccacatt
5461 tccctgtaga gaatattagt gcagctcaaa ttacaatgtg cccccatgtg attgttgatg
5521 tgagacagct tgaacctgtg cttttgcccc tccctgacat aaggaacaga ttctttcatt
5581 acaaccagga agacaccccc cggatgagac ttgtggccat gttgtacaca cctcttagag
5641 caaactctgg tgaggacgtg ttcactgtgt cttgcagagt cttgacccgc ccagcccctg
5701 attttgagtt cacattctta gtgccaccaa ccgtggaatc aaagactaag ccttttacac
5761 tccctatttt aaccctaggg gaactatcca attccagatt ccctgctcca atagacatgc
5821 tgtacacaga tcctaatgag acaattgtgg tacaaccaca aaatggtaga tgcaccctag
5881 atgggacact ccaagggacc acccagctgg tgcccaccca aatttgctct tttaggggca
5941 cgttgatcag ccaaacgtcg aggtcagcag attcaacaga ctcagctcca cgggtgagga
6001 accaccccct tcacgttcag ctgaagaacc tcgacgggac accatatgac ccaacagatg
6061 aggtgccggc agttctgggt gccatagact ttaaaggaac tgtgtttgga gtcgctagcc
6121 agaggaacac tacagggagc tctgtagggg cgactcgtgc ccatgaggtg cacatagaca
6181 ccacaaaccc tagatacacc ccaaaacttg gttctgtgtt gatgcattct gagtctagtg
6241 attttgatga tggacaacca acccgcttca cacccattgg catgggagca gatgattggc
6301 accaatggga attgcccgaa tattcaggtc accttactct caacatgaac ctagcccctg
6361 cagttgctcc tgctttcccc ggtgagcgca tcctcttctt taggtcagtg gttccatctg
6421 ctggtggcta cggatcaggc caaatagact gcctcatccc acaggagtgg gttcagcact
6481 tctatcagga ggccgcccct tcacaatctg cggtggctct tattagatat gttaaccctg
6541 acactgggag aaacatcttt gaggcaaagc tacacagaga agggttcatt actgtggcaa
6601 attctggaaa caaccccata gttgtgcccc cgaatggcta ttttaggttt gaggcctggg
6661 tcaatcaatt ctacacactc acccccatgg gaactggaca ggggcgcagg agagtccaat
6721 aatggcagga gctttctttg caggacttgc aggtgacgcc ataacgaatg gtgtcgggtc
6781 cctgatcaac gctggggcca atgcaatcaa ccagaaggtg gagtatgatt tcaacaaaca
6841 actccaattg gcatctttta agcatgacaa ggagatgctg caatcacaag ttctagccac
6901 caaacaactc cagcaggaaa tgatgaacat aaggcaaggg gtcttgaccg ctggcggctt
6961 ttcccctact gatgccgcga ggggcgctgt aaacgcgcca atgacaaaga tcctggattg
7021 gaatggtaca agatattttg ccccaaatag catgaaaaca accagttatt caggtcagtt
7081 ttccagtaat cctgtgcata ggcaacccac tttgtcccgt cctgattccc aaaaagtcaa
7141 aattaatagt gattctgcta gtatatatag ttctatgtct actgctcctt cacaatcaac
7201 ccattcaatg attctgactt cagggtctgg atcgtccagg acaacctcct ctcccacagt
7261 gacttccacc ctatctagga ccagtgactg ggtgaggggg caaaatgaga ggcttagccc
7321 gttcatggat ggtgctctcc aaacaacttt tgtcacacca ccatcgagca gagcttcatc
7381 aaatgggtcg gtctcgaccg ttcccaaagc tgttttggac tcctggactc ctatgttcaa
7441 tacccatagg cagcctctct tcgctcactt gcgtaggcga ggggagtcac aaatttagtg
7501 aaaagattga tcaggttttc ttcttccttc tttctccttt tctttctttt
//