Typing tool
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Typing tool
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Complete norovirus genomes
| JX459905 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS JX459905 7560 bp RNA linear VRL 10-MAY-2013
DEFINITION Norovirus Hu/GII.4/Randwick/NSW938K/2011/AU, complete genome.
ACCESSION JX459905
VERSION JX459905.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Randwick/NSW938K/2011/AU
ORGANISM Norovirus Hu/GII.4/Randwick/NSW938K/2011/AU
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7560)
AUTHORS Eden,J.S., Tanaka,M.M., Boni,M.F., Rawlinson,W.D. and White,P.A.
TITLE Recombination within the Pandemic Norovirus GII.4 Lineage
JOURNAL J. Virol. 87 (11), 6270-6282 (2013)
PUBMED 23536665
REFERENCE 2 (bases 1 to 7560)
AUTHORS Eden,J.-S. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (06-AUG-2012) School of Biotechnology and Biomolecular
Sciences, University of New South Wales, Anzac Parade, Sydney, NSW
2052, Australia
FEATURES Location/Qualifiers
source 1..7560
/organism="Norovirus Hu/GII.4/Randwick/NSW938K/2011/AU"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Randwick/NSW938K/2011/AU"
/host="Homo sapiens"
/db_xref="taxon:1241972"
/geo_loc_name="Australia"
/collection_date="Aug-2011"
/note="genotype: GII.4"
5'UTR 1..4
CDS 5..5104
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="AFV08785.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDKMFSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEVVVSYSAKDGVSGLPELSTVRQPE
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVEQGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK
LRPLNIINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPED
LVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKTM
PELKQALKNISIKKCQIVYSGCTFTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQMENTEEATNKDGC
PKPKDIEEFVISSDDIKTEGKKGKNKAGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGASKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKDGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMAPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPFESMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6707
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AFV08786.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNVPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6707..7513
/note="minor structural protein"
/codon_start=1
/product="VP2"
/protein_id="AFV08787.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFFETDAARGAIN
APMTKVLDWSGTRYWAPDARTTTYNAGRFSSPQPSGALLGRINPRIPTPARGSSSTSS
NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNV
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIHRRGESRV"
3'UTR 7514..7560
ORIGIN
1 gtgaatgaag atggcctcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acaaaatgtt ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcctaaac agcccccccc gagggaaata ccacaaagac ccccgcgacc
181 acctactcca gaactggtca aaaagatccc tcctccccca cccaacgggg aggatgaagt
241 agtggtttct tatagtgcca aagatggcgt ttccggttta cctgagcttt ccaccgtcag
301 gcaaccggag gaaaccaata cggccttcag tgtccctcca ctcaatcaga gggagaatag
361 ggatgctaag gaaccactga ctggaacaat tctggaaatg tgggatggag aaatctacca
421 ttatggcctg tatgttgagc aaggtcttgt gttgggtgtg cacaaaccac cagctgccat
481 cagtctcgcc aaggtcgaac taacaccact ctccttgttc tggagacctg tgtacactcc
541 tcaatacctc atctctccag acactctcaa gaaattacac ggagaaacat tcccctacac
601 agccttcgac aacaactgct atgccttttg ttgctgggtc ctggatctaa acgactcgtg
661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagactggaa
721 taggaaaccc ctccccacta tggatgattc caaattaaag aaggtggcta atatattcct
781 gtgcaccctg tcttcgctat tcactaggcc cataaaagac ataataggga agctaaggcc
841 tctcaacatc atcaacatct tggcttcatg tgattggact ttcgcaggca tagtggagtc
901 cttgatactc ttggcagagc tctttggagt cttctggaca cccccagatg tgtctgcgat
961 gattgccccc ttactcggtg atttcgagtt acaaggacct gaggaccttg tagtggagct
1021 cgtccctgta gtaatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg
1081 aaaaatgttg tcatctgctg catctacctt gagagcttgt aaagatcttg gtgcgtatgg
1141 gctagagatc ctaaagttag tcatgaagtg gttcttcccg aagaaagagg aagcaaatga
1201 actggctatg gtgagatcca tcgaggatgc agtgctggac ctcgaggcaa ttgaaaacaa
1261 ccatatgacc accttgctca aagacaaaga cagcctggca acctatatga gaacccttga
1321 cctcgaggaa gagaaagcca gaaaactctc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gcccttctgg cgagaatcgc cgctgcacgc tccctggtgc accgggcgaa
1441 ggaggagctt tccagcagac caagacctgt agtcttgatg atatcaggca gaccaggaat
1501 agggaagacc caccttgcta gggaagtggc taagagaatt gcagcctccc tcacaggaga
1561 ccagcgtgtg ggtctcatcc cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga
1621 gagggtcgtc ctatgggacg actatggaat gagcaatccc atccacgacg ccctcaggct
1681 gcaagaactc gctgacactt gccccctcac tctaaattgt gacagaattg agaataaagg
1741 aaaggtcttt gacagcgatg tcattatcat cactactaac ctggccaacc cagcaccact
1801 ggactatgtc aactttgaag cgtgctcgag gcgcatcgat ttcctcgtgt atgcagaagc
1861 ccccgaggtc gaaaaggcga agcgtgactt cccgggccaa cctgacatgt ggaaaaacgc
1921 ttttagttct gatttctcac acataaaatt ggcactggct ccacagggtg gctttgataa
1981 gaacgggaat accccacacg ggaagggcgt catgaagact ctcaccactg gctccctcat
2041 tgcccgggca tcagggctgc tccatgagag attggatgag tttgaactac agggcccagc
2101 tcttaccacc ttcaactttg accgcaacaa agtgcttgcc ttcaggcagc ttgctgctga
2161 aaacaaatac ggtttgatgg acacaatgaa agttgggagg cagctcaagg atgtcaaaac
2221 catgccagaa ctcaaacaag cactcaagaa tatctcaatc aagaagtgcc agattgtgta
2281 tagtggttgc actttcacac ttgagtctga tggtaagggc aatgtgaaag ttgacagagt
2341 tcagagcacc tccgttcaga ccaacaatga gctggctggc gccctgcacc atctaaggtg
2401 cgccagaatc aggtactatg tcaagtgtgt tcaggaggcc ctgtattcta tcatccagat
2461 tgctggggct gcatttgtca ccacgcgcat catcaagcgt gtgaacattc aagatttatg
2521 gtccaagcca caaatggaaa acacagagga ggccaccaac aaggacgggt gtccaaaacc
2581 caaagacatt gaagagttcg tcatttcatc tgacgacatt aaaactgaag gtaagaaagg
2641 gaagaacaag gccggccgtg gcaagaagca cacagccttc tcaagtaaag gtctcagcga
2701 tgaagagtat gatgagtaca agagaattag agaggaaagg aatggcaagt actccataga
2761 agagtaccta caggataggg acaaatacta tgaggaggtg gccattgcca gggcgaccga
2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca ggccaacaag
2881 gaaacaacgc aaggaagaaa gagcttctct cggtttagtc acaggttctg aaattaggaa
2941 aaggaaccca gaagacttca agcctaaagg gaaactatgg gctgacgatg acagaagtgt
3001 ggactacaat gaaaaactca gctttgaggc cccaccaagc atctggtcaa ggatagtcaa
3061 ctttggttca ggttggggct tctgggtttc ccccagcctg ttcataacat caacccacgt
3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaatcc aggtgcacaa
3181 gtcaggcgaa ttctgtcgct tgaggttccc aaaaccaatc aggactgatg tgactggcat
3241 gatcttagaa gaaggtgcgc ccgaaggcac cgtggttaca ctactcatca aaaggtccac
3301 tggagaactc atgcccctag cagctagaat ggggacccat gcaaccatga agattcaagg
3361 gcgcactgtt ggaggacaga tgggcatgct tctgacagga tccaacgcca aaagcatgga
3421 tctaggcacc acaccaggtg attgcggctg tccctatatc tacaagagag gaaatgacta
3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac
3541 ccaggggggt gagggggaag ccacacttga aggtggtgcc agtaagggaa catactgtgg
3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaaaacca aattctggag
3661 atcatccaca gcaccactcc cacctggcac ctatgaacca gcctacctag gtggcaagga
3721 ccccagggtc aaggacggcc cctcgttgca gcaagtcatg agggaccagc tgaaaccatt
3781 tacagagcct aggggtaagc caccaaagcc aagcgtgtta gaagctgcca agaaaaccat
3841 catcaatgtc cttgaacaaa caattgaccc acctgagaag tggtcgttcg cacaagcttg
3901 cgcgtccctt gacaagacca cttctagcgg ccatccgcac cacatgcgga aaaacgactg
3961 ctggaacggg gaatccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat
4021 gtttgaagaa ggaaagaaca tggccccagt ctacacagct gcacttaagg atgaattagt
4081 taagactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatttagc
4141 aaccatgatc cggtgtgctc gagcattcgg aggcctgatg gatgaactca aagcacactg
4201 tgtcacactt cctatcagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga
4261 gaagcattcc aggtacagat accactatga tgctgactac tctcggtggg attcaacaca
4321 acagagagct gtgctggcag ctgctttaga aatcatggtt aaattctcct cagaaccaca
4381 tttggctcag gtagtagcgg aagaccttct ttctcctagc gtggtggatg tgggtgactt
4441 cacaatatca atcaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc
4501 catcgcccac tggctcctca ctctctgtgc actctccgaa gtcacaaatt tgtccccaga
4561 catcatacag gctaattctc tcttctcctt ctatggtgat gatgaaattg ttagcacaga
4621 cataaaatta gacccagaga agttgacagc aaagcttaag gaatacgggt tgaaaccaac
4681 tcgccctgat aaaactgaag gacctcttgt tatttctgaa gacttagatg gtttgacttt
4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagctc
4801 aatactcagg caaatgtact ggactagggg ccccaaccat gaagacccat ttgaatcaat
4861 gattccacac tctcaaagac ccatacaatt gatgtccttg ctgggagagg ccgcgctcca
4921 cggcccaacg ttctacagta aaatcagcaa attagtcatt gcagagctaa aagaaggtgg
4981 tatggatttt tacgtgccca ggcaagagcc aatgttcaga tggatgagat tctcagacct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccaa cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gtcggtgccg ctattgcggc gcccgtagcg ggccaacaaa
5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagttcacag
5281 tatcccctag aaacgctcca ggtgaaatac tatggagtgc gcccttaggc cctgatctga
5341 atccctacct atctcacttg gccagaatgt ataatggtta tgcaggtggt tttgaagtgc
5401 aggtgatcct cgcggggaac gcgttcaccg ccggaaaaat tatatttgca gcagtcccac
5461 caaattttcc aactgaaggc ttgagtccca gccaggtcac tatgttcccc cacataatag
5521 tggatgttag gcaattggaa cctgtgttga tccccctacc tgatgttagg aataacttct
5581 atcactataa ccagtcaaat gattctacca ttaaattgat agcaatgctg tatacaccac
5641 ttagggctaa taatgctggg gaagatgtct ttacagtctc ttgtcgagtt ctcacgaggc
5701 catcccctga ttttgatttt atattcttag tgccacctac agttgagtca agaactaaac
5761 catttactgt cccaatctta actgttgaag aaatgaccaa ttcaagattc cccattcctt
5821 tggaaaaatt gttcacgggt cccagcagtg cctttgttgt ccaaccacaa aatggcagat
5881 gcacgactga tggcgtgctc ttaggcacca cccaactgtc tcctgtcaac atttgcacct
5941 tcagagggga tgtcacccac attgcaggtt ctcgcaatta cacaatgaat ttggcctctc
6001 taaattggaa caattatgac ccaacagaag aaatcccagc ccctctaggg actccagact
6061 tcgtgggaaa gattcaaggt gtgctcactc aaaccacgaa gggagatggc tcgacccgtg
6121 gccataaagc tacagtttac actgggagtg ccccctttac tccaaagctg ggtagtgttc
6181 aatttagtac tgatacagag aatgattttg aaactcacca aaatacaaaa ttcaccccag
6241 tcggtgtcat ccaggatggt ggcaccaccc accgaaatga accccaacaa tgggtgctcc
6301 caagttattc aggtaggaat gtccctaatg tacacctagc ccctgctgta gcccccactt
6361 ttccgggtga acaacttctt ttctttaggt ccactatgcc cggatgcagc gggtatccca
6421 acatggattt ggattgccta ctcccccagg agtgggtgca gcacttctac caagaggcag
6481 ctccagcaca atctgatgtg gctctattga gatttgtgaa tccagacacg ggtagggtcc
6541 tgtttgagtg caagctccat aaatcaggct atgtcacagt ggctcacacc ggccagcatg
6601 atttggtcat cccccccaat ggttatttta gatttgactc ctgggttaat caattctaca
6661 cgcttgcccc catgggaaat ggaacggggc gtagacgcgc cttataatgg ctggagcttt
6721 ctttgctgga ttggcgtctg atgtccttag ctctggactt ggttccctaa tcaatgctgg
6781 ggctggggct atcaaccaaa agattgattt tgaaaataac agaaaattgc agcaagcctc
6841 cttccagttt agcagtaatc tacaacaggc ttcctttcaa catgataaag agatgctcca
6901 agcacaaatt gaggccacta aaaagttgca acaggaaatg atgaaagtca aacaggcaat
6961 gctcttagaa ggtggattct ttgaaacaga tgcagcccgt ggggcaatta acgcccctat
7021 gacaaaggtc ttggactgga gcggaacaag gtactgggcc cctgatgcta ggactacaac
7081 atacaatgca ggccgttttt cctcccctca accttcgggg gcactgctag gaagaatcaa
7141 tcccaggatt cccacccccg ctcggggctc ctctagcaca tcttctaatg cttccactgc
7201 tacttctata tattcaaatc aaactgtttc aacgagactt ggttctacag ctggttctgg
7261 caccaatgtc tcgagtctcc cgtcaactgc aaggactagg agttgggttg aggatcaaaa
7321 cagaaatttg tcacctttca tgaggggggc tcacaacgta tcgtttgtca ccccaccatc
7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg
7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgcc cacattcata ggcgagggga
7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttt ccctttcttt agtgtctttt
//