Typing tool
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Typing tool
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Complete norovirus genomes
| JX459903 | GII.4 Apeldoorn | |
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| GII.P4 Apeldoorn |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS JX459903 7559 bp RNA linear VRL 10-MAY-2013
DEFINITION Norovirus Hu/GII.4/Jannali/NSW774M/2011/AU, complete genome.
ACCESSION JX459903
VERSION JX459903.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Jannali/NSW774M/2011/AU
ORGANISM Norovirus Hu/GII.4/Jannali/NSW774M/2011/AU
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7559)
AUTHORS Eden,J.S., Tanaka,M.M., Boni,M.F., Rawlinson,W.D. and White,P.A.
TITLE Recombination within the Pandemic Norovirus GII.4 Lineage
JOURNAL J. Virol. 87 (11), 6270-6282 (2013)
PUBMED 23536665
REFERENCE 2 (bases 1 to 7559)
AUTHORS Eden,J.-S. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (06-AUG-2012) School of Biotechnology and Biomolecular
Sciences, University of New South Wales, Anzac Parade, Sydney, NSW
2052, Australia
FEATURES Location/Qualifiers
source 1..7559
/organism="Norovirus Hu/GII.4/Jannali/NSW774M/2011/AU"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Jannali/NSW774M/2011/AU"
/host="Homo sapiens"
/db_xref="taxon:1241969"
/geo_loc_name="Australia"
/collection_date="Feb-2011"
/note="genotype: GII.4"
5'UTR 1..4
CDS 5..5104
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="AFV08779.1"
/translation="MKMASNDASAAAVADSNNDTVKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELIKNIPPPPPNGEDDIVVSYSVKGGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
FARVELTPLSLYWRPVYTPQYLISPDALKRLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTYLAREV
AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM
PELKQALKNISIKKCQIVYSGSTYTLESDGKGNVKVDRVQSASVQTNNELAGALHHLR
CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQSLWSKPQVENTEETTSKDGC
PKPKEDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6707
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AFV08780.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDHDFDANQNTKFTPVGVIQDG
DTAHRNEPQQWVLPSYSGRNSHNVHLAPTVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6707..7513
/note="minor structural protein"
/codon_start=1
/product="VP2"
/protein_id="AFV08781.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFFETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGHFSTPQPSGALPGRANLRAAVPARGSSNTPS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARARSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
3'UTR 7514..7559
ORIGIN
1 gtgaatgaag atggcctcta acgacgcttc cgctgccgct gttgctgata gcaacaacga
61 caccgtaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt tcaaacgagc
121 cctcggggcg cggcctaaac agcctccccc gagggaaata ccacaaagac ccccacgacc
181 acccactcca gaactgatca aaaatatccc ccctccccca cccaacggag aggacgacat
241 agtggtttct tatagtgtca aaggtggcgt ctctggtttg cctgatcttt ccaccgtcag
301 gcaaccggaa gaatctaata cggccttcag tgtccctcca ctcaaccaga gggagaatag
361 agatgctaag gaaccactga ctggaacaat tttggaaatg tgggatggag aaatctatca
421 ttatggcctg tatgtagagc gaggtcttgt gctaggtgtg cacaaaccac cagctgccat
481 cagcttcgct agggtcgaac taacaccact ttccttgtac tggagacctg tgtatactcc
541 ccagtacctc atctctccag acgctctcaa gagactacac ggagagacgt tcccctacac
601 agcttttgac aacaactgct acgccttttg ttgttgggtc ctggacctaa acgactcgtg
661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa
721 taggaaaccc ctccccacta tggatgactc caagttaaag aaggtagcta acatattcct
781 gtgtgcactg tcttcgctat tcaccaggcc tataaaagat ataataggga agctaaggcc
841 tcttaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtggagtc
901 cttgatactc ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gattgccccc ttactcggtg actacgagct acagggacct gaggaccttg cagtggagct
1021 cgtccctgta gtgatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg
1081 aaaaatgttg tcatctgctg catccacctt gagagcttgt aaagatcttg gtgcatatgg
1141 gctagagatc ctaaagttgg ttatgaagtg gttcttcccg aagaaagagg aagcaaatga
1201 actggccata gtgagatcca tcgaggatgc agtcctggat ctcgaagcaa ttgaaaacaa
1261 ccatatgacc accttgctca aagacaaaga cagtctggca acctacatga gaacccttga
1321 ccttgaggag gagaaagcca ggaaactctc gaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgc tctctggtgc atcgagcgaa
1441 ggaggaactt tctagcagac caagacctgt agtgttgatg atatcaggca gaccaggaat
1501 agggaagacc taccttgcca gggaagtggc taagagaatc gcagcctccc ttacaggaga
1561 ccagcgtgta ggcctcgtcc cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga
1621 gagggtcgtt ctatgggacg actatggaat gagcaatcct atccacgatg ccctcagatt
1681 gcaagaactc gctgacactt gtcccctcac cctaaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagcgatg tcatcattat caccactaat ttggctaacc cagcaccact
1801 ggactatgtc aactttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc
1861 ccctgaggtc gaaaaggcga agcgtgactt cccaggccaa cccgacatgt ggaagaacgc
1921 cttcagttct gatttctcac acataaaact aacattggct ccacagggtg gtttcgacaa
1981 gaacgggaac accccacacg ggaagggcgt catgaagact ctcaccaccg gctcccttat
2041 tgcccgggca tcagggctac tccatgaaag actagatgaa tttgaactac agggcccaac
2101 tctcaccact ttcaactttg atcgcaataa agtgcttgcc tttagacaac ttgctgctga
2161 aaataaatat gggttgatgg acacaatgaa agttgggagg cagctcaagg atgtcagaac
2221 aatgccagaa ctcaagcaag cactcaagaa tatttcaatc aagaagtgcc aaatagtgta
2281 tagtggtagc acctatacac ttgagtctga tggcaagggt aatgtgaagg ttgacagagt
2341 tcaaagcgcc tccgtgcaga ccaacaatga gctggctggc gccctacacc atctaaggtg
2401 cgccagaata agatactatg tcaggtgtgt ccaggaggcc ctgtattcca tcatccagat
2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aaagcctatg
2521 gtctaagcca caagtggaaa atacagagga gactaccagc aaggacgggt gcccaaaacc
2581 caaagaagat gaggagttcg tcatttcatc cgacgacatc aaaactgagg gcaagaaagg
2641 gaaaaacaag actggccgcg gtaagaagca cacagccttc tcaagcaaag gtctcagtga
2701 tgaagagtac gacgagtaca agaggattag agaagaaagg aatggtaagt actccataga
2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgactga
2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca ggccaacaag
2881 gaaacaacgc aaggaggaaa gagcttctct cggtttagtc acaggttctg aaattaggaa
2941 aagaaatcca gatgatttca aacccaaggg gaaactgtgg gctgacgatg acagaagtgt
3001 ggactacaat gagaaactca gttttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggttca ggttggggat tctgggtctc ccccagtttg ttcataacat caacccatgt
3121 cataccccaa ggagcgaagg agttctttgg agtccccatc aaacaaattc aggtacataa
3181 gtcaggcgaa ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacgggcat
3241 gatcttagaa gaaggtgcac ccgagggaac cgtggttaca ctactcatca aaagatccac
3301 tggggagctc atgcccctgg cagctaggat ggggacccat gcaaccatga aaatccaagg
3361 gcgcactgtt ggaggtcaaa tgggcatgct tctgacagga tccaacgcca aaagcatgga
3421 tctgggtacc acaccaggtg attgtggctg tccctacatc tacaagaggg gaaatgacta
3481 tgtggtcatt ggagtccaca cggctgccgc tcgtgggggc aacactgtca tatgtgccac
3541 ccaggggagt gagggagagg ctacacttga aggtggtgac aataaaggga catactgtgg
3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaagacca aattctggag
3661 atcatccaca gcaccactcc cacctggcac ctatgaacca gcttatcttg gtggtaagga
3721 tcccagagtc aagggtgggc cttcactaca gcaggtcatg agggatcagc taaagccatt
3781 cacagagccc aggggcaagc caccaaagcc aagtgtgttg gaagctgcta agaaaaccat
3841 catcaatgtc cttgagcaaa caattgatcc acctgagaaa tggtcgttcg cacaagcttg
3901 cgcgtccctt gacaagacca cctccagtgg ccatccgcac cacatgcgga aaaacgactg
3961 ctggaacggg gagtccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat
4021 gtttgaagaa gggaagaaca tgacgccagt ctacacagct gcgcttaagg atgagttagt
4081 taaaactgac aaaatttatg gcaagatcaa gaagaggctt ctctggggct cggatttggc
4141 gaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcgcactg
4201 tgtcacactt cccattagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga
4261 gaggcactcc aggtacacgt accactatga tgctgattac tctcgatggg attcaacaca
4321 acagagagcc gtgttggcag cagctctaga aatcatggtt aagttctccc cagaaccaca
4381 tttggcccag gtagtcgcag aagaccttct ttctcctagc gtggtggatg tgggtgactt
4441 cacaatatca attaacgagg gccttccttc tggggtgccc tgcacctccc aatggaactc
4501 catcgcccac tggcttctca ccctctgtgc gctctctgaa gttacaaact tgtctcctga
4561 caccatacaa gctaactccc tcttctcttt ttatggtgat gatgaaattg ttagcacaga
4621 cataaaattg gacccagaaa agttgacagc aaagctcagg gaatatgggt taaaaccaac
4681 ccgccccgac aagactgaag gaccccttgc catctctgaa gacttgaatg gcctgacttt
4741 cttgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactag agcagagttc
4801 aatactcagg caaatgtact ggactagggg ttccaaccat gaagacccat ctgaaacaat
4861 gattccacat tcccaaagac ccatacaatt gatgtcccta ctgggggagg ccgcactcca
4921 cggcccagca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 gtgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gttggtgccg ccattgcggc acctgtagcg ggccaacaaa
5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagttcacag
5281 tatcccctag gaacgctcca ggtgaaatac tgtggagcgc gcccctaggc cctgatttga
5341 atccttacct ttcccatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc
5401 aggtaatcct cgcggggaac gcgttcaccg ccggaaaaat catatttgca gcagtcccac
5461 caaatttccc aactgaaggc ttgagcccca gccaggttac tatgttcccc cacataatag
5521 tagatgttag gcaactggaa cctgtgttga tccccttacc cgatgttagg aataatttct
5581 accattacaa tcaatcaaat gaccccacca tcaaattgat agcaatgttg tacacaccac
5641 ttagggctaa taatgctggg gacgatgtct tcacagtttc ttgtcgggta ctcacgagac
5701 catcccccga ttttgatttc atatttttag tgccacccac agttgaatca agaactaaac
5761 cattctctgt cccaatttta actgttgagg agatgaccaa ttcaagattc cccattcctt
5821 tggaaaagct gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aacggcaggt
5881 gcacgactga tggcgtgctc ctaggtacca cccaactgtc tcctgtcaac atctgcacct
5941 tcagagggga tgtcacccat attacaggta gtcgtaacta cacaatgaat ttggctactc
6001 aaaattggaa cagttatgac ccaacagaag aaatcccagc ccctctagga actccagatt
6061 tcgtgggaaa gatccaaggt gtgctcaccc aaaccacgag ggcagatggc tcgacccgtg
6121 gacacaaggc tacagtgtac actgggagcg ccgactttgc tccaaaactg ggtagagttc
6181 aatttgccac tgacacagac catgattttg atgctaacca aaacacaaag ttcaccccag
6241 tcggtgtcat ccaggatggt gatactgccc accgaaatga accccaacaa tgggtgctcc
6301 caagttactc aggtagaaat agtcacaatg tgcacctggc ccccactgta gcccccactt
6361 ttccgggtga gcaacttctc ttctttagat ccactatgcc cggatgcagc gggtacccca
6421 acatggattt ggactgtctg ctcccccagg aatgggtgca gtatttctat caagaggcag
6481 ccccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttt
6541 tgtttgagtg taagcttcat aaatcaggct atgttacagt ggctcacacc ggccaacatg
6601 atctggttat cccccccaat ggttatttta ggtttgattc ttgggtcaac cagttctaca
6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc attataatgg ctggagcttt
6721 ctttgctgga ttggcatctg acgtccttgg atccgggctt ggttctttga tcaatgccgg
6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaataac agaaaattgc aacaagcttc
6841 cttccaattc agtagcaatc tacaacaggc ttcctttcaa catgataaag agatgctcca
6901 agcacaaatt gaggccacca aaaagttgca acaggaaatg atgagagtta aacaggcaat
6961 gctcctagag ggtggattct ttgagacaga tgcagcccgt ggggcaatca acgcccccat
7021 gacaaaggct ttggactgga gtgggacaag gtactgggct cccgatgcta ggactacaac
7081 atacaatgca ggccactttt ccacccctca accctcgggg gcactgccag ggagagctaa
7141 tcttagggct gctgtccccg ctcggggctc ctccaataca ccttctaact cttctactgc
7201 tacctctgtg tactcaaatc aaaccacttc aacgagactt ggttctacag ctggttctgg
7261 taccagtgtc tcgagcctcc cgtcaactgc aagggctagg agctgggtcg aggatcaaaa
7321 taggaatttg tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc
7381 tagcagatcc tctagccaag gcacagtctc aaccgtgccc aaagaagttt tggactcctg
7441 gactggcgct ttcaatacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga
7501 gtcacgggcg taatgtgaaa agacaaaatt gattatcttt cttttcttta gtgtctttt
//