Typing tool
|
Complete norovirus genomes
JX459903 | GII.4 New Orleans | ||
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GII.P4 Hunter |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS JX459903 7559 bp RNA linear VRL 10-MAY-2013 DEFINITION Norovirus Hu/GII.4/Jannali/NSW774M/2011/AU, complete genome. ACCESSION JX459903 VERSION JX459903.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Jannali/NSW774M/2011/AU ORGANISM Norovirus Hu/GII.4/Jannali/NSW774M/2011/AU Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7559) AUTHORS Eden,J.S., Tanaka,M.M., Boni,M.F., Rawlinson,W.D. and White,P.A. TITLE Recombination within the Pandemic Norovirus GII.4 Lineage JOURNAL J. Virol. 87 (11), 6270-6282 (2013) PUBMED 23536665 REFERENCE 2 (bases 1 to 7559) AUTHORS Eden,J.-S. and White,P.A. TITLE Direct Submission JOURNAL Submitted (06-AUG-2012) School of Biotechnology and Biomolecular Sciences, University of New South Wales, Anzac Parade, Sydney, NSW 2052, Australia FEATURES Location/Qualifiers source 1..7559 /organism="Norovirus Hu/GII.4/Jannali/NSW774M/2011/AU" /mol_type="genomic RNA" /strain="Hu/GII.4/Jannali/NSW774M/2011/AU" /host="Homo sapiens" /db_xref="taxon:1241969" /country="Australia" /collection_date="Feb-2011" /note="genotype: GII.4" 5'UTR 1..4 CDS 5..5104 /note="ORF1" /codon_start=1 /product="non-structural polyprotein" /protein_id="AFV08779.1" /translation="MKMASNDASAAAVADSNNDTVKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELIKNIPPPPPNGEDDIVVSYSVKGGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS FARVELTPLSLYWRPVYTPQYLISPDALKRLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTYLAREV AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM PELKQALKNISIKKCQIVYSGSTYTLESDGKGNVKVDRVQSASVQTNNELAGALHHLR CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQSLWSKPQVENTEETTSKDGC PKPKEDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6707 /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="AFV08780.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDHDFDANQNTKFTPVGVIQDG DTAHRNEPQQWVLPSYSGRNSHNVHLAPTVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6707..7513 /note="minor structural protein" /codon_start=1 /product="VP2" /protein_id="AFV08781.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFFETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGHFSTPQPSGALPGRANLRAAVPARGSSNTPS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARARSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" 3'UTR 7514..7559 ORIGIN 1 gtgaatgaag atggcctcta acgacgcttc cgctgccgct gttgctgata gcaacaacga 61 caccgtaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt tcaaacgagc 121 cctcggggcg cggcctaaac agcctccccc gagggaaata ccacaaagac ccccacgacc 181 acccactcca gaactgatca aaaatatccc ccctccccca cccaacggag aggacgacat 241 agtggtttct tatagtgtca aaggtggcgt ctctggtttg cctgatcttt ccaccgtcag 301 gcaaccggaa gaatctaata cggccttcag tgtccctcca ctcaaccaga gggagaatag 361 agatgctaag gaaccactga ctggaacaat tttggaaatg tgggatggag aaatctatca 421 ttatggcctg tatgtagagc gaggtcttgt gctaggtgtg cacaaaccac cagctgccat 481 cagcttcgct agggtcgaac taacaccact ttccttgtac tggagacctg tgtatactcc 541 ccagtacctc atctctccag acgctctcaa gagactacac ggagagacgt tcccctacac 601 agcttttgac aacaactgct acgccttttg ttgttgggtc ctggacctaa acgactcgtg 661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa 721 taggaaaccc ctccccacta tggatgactc caagttaaag aaggtagcta acatattcct 781 gtgtgcactg tcttcgctat tcaccaggcc tataaaagat ataataggga agctaaggcc 841 tcttaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtggagtc 901 cttgatactc ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactcggtg actacgagct acagggacct gaggaccttg cagtggagct 1021 cgtccctgta gtgatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg 1081 aaaaatgttg tcatctgctg catccacctt gagagcttgt aaagatcttg gtgcatatgg 1141 gctagagatc ctaaagttgg ttatgaagtg gttcttcccg aagaaagagg aagcaaatga 1201 actggccata gtgagatcca tcgaggatgc agtcctggat ctcgaagcaa ttgaaaacaa 1261 ccatatgacc accttgctca aagacaaaga cagtctggca acctacatga gaacccttga 1321 ccttgaggag gagaaagcca ggaaactctc gaccaagtct gcttcacctg acatcgtggg 1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgc tctctggtgc atcgagcgaa 1441 ggaggaactt tctagcagac caagacctgt agtgttgatg atatcaggca gaccaggaat 1501 agggaagacc taccttgcca gggaagtggc taagagaatc gcagcctccc ttacaggaga 1561 ccagcgtgta ggcctcgtcc cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga 1621 gagggtcgtt ctatgggacg actatggaat gagcaatcct atccacgatg ccctcagatt 1681 gcaagaactc gctgacactt gtcccctcac cctaaactgt gacaggattg agaacaaagg 1741 aaaggtcttt gacagcgatg tcatcattat caccactaat ttggctaacc cagcaccact 1801 ggactatgtc aactttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc 1861 ccctgaggtc gaaaaggcga agcgtgactt cccaggccaa cccgacatgt ggaagaacgc 1921 cttcagttct gatttctcac acataaaact aacattggct ccacagggtg gtttcgacaa 1981 gaacgggaac accccacacg ggaagggcgt catgaagact ctcaccaccg gctcccttat 2041 tgcccgggca tcagggctac tccatgaaag actagatgaa tttgaactac agggcccaac 2101 tctcaccact ttcaactttg atcgcaataa agtgcttgcc tttagacaac ttgctgctga 2161 aaataaatat gggttgatgg acacaatgaa agttgggagg cagctcaagg atgtcagaac 2221 aatgccagaa ctcaagcaag cactcaagaa tatttcaatc aagaagtgcc aaatagtgta 2281 tagtggtagc acctatacac ttgagtctga tggcaagggt aatgtgaagg ttgacagagt 2341 tcaaagcgcc tccgtgcaga ccaacaatga gctggctggc gccctacacc atctaaggtg 2401 cgccagaata agatactatg tcaggtgtgt ccaggaggcc ctgtattcca tcatccagat 2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aaagcctatg 2521 gtctaagcca caagtggaaa atacagagga gactaccagc aaggacgggt gcccaaaacc 2581 caaagaagat gaggagttcg tcatttcatc cgacgacatc aaaactgagg gcaagaaagg 2641 gaaaaacaag actggccgcg gtaagaagca cacagccttc tcaagcaaag gtctcagtga 2701 tgaagagtac gacgagtaca agaggattag agaagaaagg aatggtaagt actccataga 2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgactga 2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca ggccaacaag 2881 gaaacaacgc aaggaggaaa gagcttctct cggtttagtc acaggttctg aaattaggaa 2941 aagaaatcca gatgatttca aacccaaggg gaaactgtgg gctgacgatg acagaagtgt 3001 ggactacaat gagaaactca gttttgaagc cccaccaagc atctggtcga ggatagtcaa 3061 ctttggttca ggttggggat tctgggtctc ccccagtttg ttcataacat caacccatgt 3121 cataccccaa ggagcgaagg agttctttgg agtccccatc aaacaaattc aggtacataa 3181 gtcaggcgaa ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacgggcat 3241 gatcttagaa gaaggtgcac ccgagggaac cgtggttaca ctactcatca aaagatccac 3301 tggggagctc atgcccctgg cagctaggat ggggacccat gcaaccatga aaatccaagg 3361 gcgcactgtt ggaggtcaaa tgggcatgct tctgacagga tccaacgcca aaagcatgga 3421 tctgggtacc acaccaggtg attgtggctg tccctacatc tacaagaggg gaaatgacta 3481 tgtggtcatt ggagtccaca cggctgccgc tcgtgggggc aacactgtca tatgtgccac 3541 ccaggggagt gagggagagg ctacacttga aggtggtgac aataaaggga catactgtgg 3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaagacca aattctggag 3661 atcatccaca gcaccactcc cacctggcac ctatgaacca gcttatcttg gtggtaagga 3721 tcccagagtc aagggtgggc cttcactaca gcaggtcatg agggatcagc taaagccatt 3781 cacagagccc aggggcaagc caccaaagcc aagtgtgttg gaagctgcta agaaaaccat 3841 catcaatgtc cttgagcaaa caattgatcc acctgagaaa tggtcgttcg cacaagcttg 3901 cgcgtccctt gacaagacca cctccagtgg ccatccgcac cacatgcgga aaaacgactg 3961 ctggaacggg gagtccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat 4021 gtttgaagaa gggaagaaca tgacgccagt ctacacagct gcgcttaagg atgagttagt 4081 taaaactgac aaaatttatg gcaagatcaa gaagaggctt ctctggggct cggatttggc 4141 gaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcgcactg 4201 tgtcacactt cccattagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga 4261 gaggcactcc aggtacacgt accactatga tgctgattac tctcgatggg attcaacaca 4321 acagagagcc gtgttggcag cagctctaga aatcatggtt aagttctccc cagaaccaca 4381 tttggcccag gtagtcgcag aagaccttct ttctcctagc gtggtggatg tgggtgactt 4441 cacaatatca attaacgagg gccttccttc tggggtgccc tgcacctccc aatggaactc 4501 catcgcccac tggcttctca ccctctgtgc gctctctgaa gttacaaact tgtctcctga 4561 caccatacaa gctaactccc tcttctcttt ttatggtgat gatgaaattg ttagcacaga 4621 cataaaattg gacccagaaa agttgacagc aaagctcagg gaatatgggt taaaaccaac 4681 ccgccccgac aagactgaag gaccccttgc catctctgaa gacttgaatg gcctgacttt 4741 cttgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactag agcagagttc 4801 aatactcagg caaatgtact ggactagggg ttccaaccat gaagacccat ctgaaacaat 4861 gattccacat tcccaaagac ccatacaatt gatgtcccta ctgggggagg ccgcactcca 4921 cggcccagca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg 4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 gtgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gttggtgccg ccattgcggc acctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagttcacag 5281 tatcccctag gaacgctcca ggtgaaatac tgtggagcgc gcccctaggc cctgatttga 5341 atccttacct ttcccatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc 5401 aggtaatcct cgcggggaac gcgttcaccg ccggaaaaat catatttgca gcagtcccac 5461 caaatttccc aactgaaggc ttgagcccca gccaggttac tatgttcccc cacataatag 5521 tagatgttag gcaactggaa cctgtgttga tccccttacc cgatgttagg aataatttct 5581 accattacaa tcaatcaaat gaccccacca tcaaattgat agcaatgttg tacacaccac 5641 ttagggctaa taatgctggg gacgatgtct tcacagtttc ttgtcgggta ctcacgagac 5701 catcccccga ttttgatttc atatttttag tgccacccac agttgaatca agaactaaac 5761 cattctctgt cccaatttta actgttgagg agatgaccaa ttcaagattc cccattcctt 5821 tggaaaagct gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aacggcaggt 5881 gcacgactga tggcgtgctc ctaggtacca cccaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccat attacaggta gtcgtaacta cacaatgaat ttggctactc 6001 aaaattggaa cagttatgac ccaacagaag aaatcccagc ccctctagga actccagatt 6061 tcgtgggaaa gatccaaggt gtgctcaccc aaaccacgag ggcagatggc tcgacccgtg 6121 gacacaaggc tacagtgtac actgggagcg ccgactttgc tccaaaactg ggtagagttc 6181 aatttgccac tgacacagac catgattttg atgctaacca aaacacaaag ttcaccccag 6241 tcggtgtcat ccaggatggt gatactgccc accgaaatga accccaacaa tgggtgctcc 6301 caagttactc aggtagaaat agtcacaatg tgcacctggc ccccactgta gcccccactt 6361 ttccgggtga gcaacttctc ttctttagat ccactatgcc cggatgcagc gggtacccca 6421 acatggattt ggactgtctg ctcccccagg aatgggtgca gtatttctat caagaggcag 6481 ccccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttt 6541 tgtttgagtg taagcttcat aaatcaggct atgttacagt ggctcacacc ggccaacatg 6601 atctggttat cccccccaat ggttatttta ggtttgattc ttgggtcaac cagttctaca 6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc attataatgg ctggagcttt 6721 ctttgctgga ttggcatctg acgtccttgg atccgggctt ggttctttga tcaatgccgg 6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaataac agaaaattgc aacaagcttc 6841 cttccaattc agtagcaatc tacaacaggc ttcctttcaa catgataaag agatgctcca 6901 agcacaaatt gaggccacca aaaagttgca acaggaaatg atgagagtta aacaggcaat 6961 gctcctagag ggtggattct ttgagacaga tgcagcccgt ggggcaatca acgcccccat 7021 gacaaaggct ttggactgga gtgggacaag gtactgggct cccgatgcta ggactacaac 7081 atacaatgca ggccactttt ccacccctca accctcgggg gcactgccag ggagagctaa 7141 tcttagggct gctgtccccg ctcggggctc ctccaataca ccttctaact cttctactgc 7201 tacctctgtg tactcaaatc aaaccacttc aacgagactt ggttctacag ctggttctgg 7261 taccagtgtc tcgagcctcc cgtcaactgc aagggctagg agctgggtcg aggatcaaaa 7321 taggaatttg tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc 7381 tagcagatcc tctagccaag gcacagtctc aaccgtgccc aaagaagttt tggactcctg 7441 gactggcgct ttcaatacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga 7501 gtcacgggcg taatgtgaaa agacaaaatt gattatcttt cttttcttta gtgtctttt //