Typing tool
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Typing tool
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Complete norovirus genomes
| JX445169 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..5084
ORF2: 5065..6687
ORF3: 6687..7493
LOCUS JX445169 7515 bp RNA linear VRL 10-OCT-2012
DEFINITION Norovirus Hu/GII.4/AlbertaEI003/2012/CA non-structural polyprotein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION JX445169
VERSION JX445169.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/AlbertaEI003/2012/CA
ORGANISM Norovirus Hu/GII.4/AlbertaEI003/2012/CA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7515)
AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and
Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health
(ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada
FEATURES Location/Qualifiers
source 1..7515
/organism="Norovirus Hu/GII.4/AlbertaEI003/2012/CA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/AlbertaEI003/2012/CA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1238267"
/country="Canada"
/collection_date="Jan-2012"
/note="genotype: GII.4"
CDS <1..5084
/codon_start=3
/product="non-structural polyprotein"
/protein_id="AFU55736.1"
/translation="DASAAAVANSNNDIAKSSSDGVLSSMAVTFKRALGARPKQPPPR
EKPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPEESNTAF
SVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVEL
APLSLYWRPVYTPQYLISPDTLKKLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM
IQRTTGFFRPYQDWNRKPLPTMDDSKIKKVANIFLCALSSLFTRPIKDIIGKIRPLNI
LNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELV
PVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN
ELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD
IVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTYLAREVAKRIAA
SLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC
DRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP
GQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHE
RLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTMPELKQA
LKNVSIKKCQIVYSGCTYILESDGKGNVKVDRIQSAAVQINNELAGALHHLRSARIRY
YVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVENTEEITSKDGCPKPKDD
EEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIR
KRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITS
THVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLL
IKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI
YKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGGAPT
LSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPK
PSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHVRKNDCWNGESFT
GKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRC
ARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRA
VLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKP
TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHGDPS
ETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5065..6687
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AFU55737.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6687..7493
/codon_start=1
/product="minor structural protein"
/protein_id="AFU55738.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRATVPARGSSSTSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
3'UTR 7494..>7515
ORIGIN
1 acgacgcttc cgctgccgct gttgctaaca gcaacaacga catcgcaaaa tcttcaagtg
61 acggagtgct ttctagcatg gctgtcactt ttaaacgagc cctcggggcg cggcctaaac
121 agcctccccc gagggaaaaa ccacaaagac ccccacgacc acctactcca gaactggtca
181 aaaatattcc ccctccccca cccaacgggg aggatgaaat agtggtttct tatagtgtca
241 aagatggtgt ttccggcttg cctgaccttt ccaccgtcag gcaaccggaa gaatccaaca
301 cggccttcag tgtccctcca ctcaatcaga gggagaatag agatgctaag gagccactta
361 ctggaacaat tctggaaatg tgggacgggg aaatctacca ttatggcctg tatgtggagc
421 gaggtcttgt actaggtgtg cacaaaccac cagctgccat cagcctcgct aaggttgagc
481 tagcaccact ctccttgtac tggagacctg tgtacactcc tcagtacctc atctctccag
541 acactctcaa gaaattatcc ggagaaacgt ttccctacac agcctttgac aacaactgtt
601 atgccttttg ttgctgggtc ctggacctaa atgactcgtg gctgagcagg agaatgatcc
661 agagaacaac tggtttcttc aggccctacc aagactggaa taggaaaccc cttcccacta
721 tggatgactc caaaataaag aaggtagcta acatattcct gtgtgctctg tcctcgctgt
781 tcactagacc cataaaagat ataataggga agataaggcc tcttaacatc ctcaacatct
841 tagcctcatg tgattggact tttgcaggta tagtggagtc cctgatactc ttggcagaac
901 tctttggagt tttctggaca cccccagatg tgtctgcgat gattgccccc ttacttggtg
961 actacgagct acaaggacct gaggatcttg cagtggagct cgtccccgtg gtgatggggg
1021 gaattggttt ggtgctagga ttcaccaaag agaagattgg gaaaatgttg tcatctgctg
1081 cgtccacctt gagagcttgt aaagaccttg gtgcatatgg gctagagatc ctaaagttgg
1141 ttatgaagtg gttcttcccg aagaaggagg aggcaaatga gctggctata gtgaggtcta
1201 tcgaggatgc agtcctagat ctcgaggcaa ttgaaaacaa ccatatgacc accttgctca
1261 aagacaaaga cagtctggca acctatatga gaacacttga ccttgaggag gagaaagcca
1321 ggaaactctc aaccaagtct gcctcacccg acatcgtggg cacaatcaac gctctcctgg
1381 cgagaatcgc tgccgcacgt tctctggtgc atcgagcgaa ggaggagctt tccagcagac
1441 caagacctgt ggtgttgatg atatcaggca ggccaggaat agggaagacc tacctcgcta
1501 gggaagtggc taagagaatc gcagcctccc ttacaggaga ccagcgtgtg ggcctcatcc
1561 cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga gagggtcgtc ctatgggacg
1621 attatggaat gagcaaccct attcacgatg ccctcaggct gcaagaactc gctgatactt
1681 gccccctcac tctaaactgt gacaggattg aaaataaagg aaaggtcttt gacagcgatg
1741 tcatcattat caccactaat ctggccaacc cagcaccact ggactatgtc aactttgaag
1801 catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc ccctgaagtc gaaaaggcga
1861 agcgtgactt cccaggccag cctgacatgt ggaagaacgc tttcagttct gatttctcac
1921 acataaaact agcactggcc ccacagggtg gtttcgacaa gaacgggaac accccacacg
1981 gaaagggcgt catgaagact ctcaccactg gctcccttat tgcccgggca tcagggctac
2041 tccatgagag gttagatgaa tttgaactac agggcccagc tctcaccacc ttcaatttcg
2101 atcgcaataa agtgcttgcc tttagacagc ttgctgctga aaataaatat ggattgatgg
2161 acacaatgag ggtcgggaaa cagctcaagg atgtcagaac catgccagaa ctcaaacaag
2221 cactcaagaa tgtttcaatc aagaagtgcc aaatagtgta tagtggttgc acctacatac
2281 ttgagtctga tggcaagggc aatgtgaaag ttgacagaat ccaaagcgcc gccgtgcaga
2341 tcaacaatga gctggctggt gccctgcacc atttgaggag cgccagaatc agatactatg
2401 tcaagtgtgt ccaggaggcc ctgtattcca tcattcaaat tgctggggct gcatttgtca
2461 ccacgcgcat tgccaagcgc atgaacatac aaaatctatg gtccaagcca caagtggaaa
2521 acacagagga gattaccagc aaggacgggt gcccaaaacc taaggatgat gaggagtttg
2581 tcatttcatc cgacgatatc aaaactgagg gcaagaaggg gaagaacaag actggccgcg
2641 gcaagaagca cacagcattt tcaagcaaag gcctcagtga tgaagagtac gatgagtaca
2701 agaggattag agaagaaagg aatggcaagt actccataga agagtacctt caggacaggg
2761 acaaatacta tgaggaggtg gccattgcca gggcgactga ggaagacttc tgtgaagagg
2821 aggaggccaa gatccggcaa aggatcttta gaccaacaag gaaacaacgc aaggaggaaa
2881 gagcctctct cggtctggtc acaggctctg aaattaggaa aagaaaccca gatgacttca
2941 aacccaaggg gaaattgtgg gctgacgatg acaggagtgt ggactacaat gagaaactca
3001 gttttgaggc cccaccaagc atctggtcga gaatagtcaa ctttggttcg ggctggggat
3061 tctgggtctc ccccagtctg ttcataacat caacccatgt cataccccag ggcgcaaagg
3121 agttctttgg agtccccatc aaacaaatac aggtacacaa gtcaggcgag ttctgccgct
3181 tgagattccc aaaaccaatc aggactgatg tgacgggcat gatcttagaa gaaggcgcac
3241 ctgagggcac cgtggtcaca ctactcatca aaaggtccac tggggaactc atgcccctag
3301 cagctaggat ggggacccat gcgaccatga agatccaagg gcgcactgtt ggaggccaga
3361 tgggcatgct tctgacagga tccaacgcca agagcatgga cctgggtact acaccaggtg
3421 attgtggctg cccctatatc tacaagagag gtaatgacta tgtggtcatt ggagtccaca
3481 cggctgccgc acgtggggga aacactgtca tatgcgccac ccaggggagt gagggagagg
3541 ccacacttga aggtggtgac aacaagggga catactgtgg tgcaccaatc ttaggcccag
3601 ggggtgcccc aacacttagc accaagacca aattttggag atcgtccaca gcatcactcc
3661 cacctggcac ctatgaacca gcctatcttg gtggcaagga ccctagagtc aagggtggcc
3721 cttcactgca gcaagtcatg agggaacagt taaagccatt cacagagcca aggggcaagc
3781 caccaaaacc aagtgtatta gaagctgcca agaagaccat catcaatgtc cttgaacaaa
3841 caattgatcc acctgagaaa tggtcgttcg cacaagcttg cgcgtccctt gacaagacca
3901 cttccagtgg ccatccgcac cacgtgcgga aaaacgactg ctggaacggg gagtccttca
3961 caggcaagtt agcagaccag gcttccaagg ccaacctgat gtttgaagaa gggaagaaca
4021 tgaccccagt ctacacagct gcgctcaagg atgagttagt taaaactgac aaaatttatg
4081 gtaagatcaa gaagaggctt ctctggggct cggacttggc gaccatgatc cggtgtgctc
4141 gagcattcgg aggcctaatg gatgagctca aagcacactg tgtcacgctt cccattagag
4201 ttggcatgaa tatgaatgag gatggcccca tcatcttcga gaggcattcc aggtacacat
4261 atcactatga tgctgattac tctcgatggg attcaacaca acagagggcc gtgttggcag
4321 cagccctaga aatcatggtt aaattctccc cagaaccaca cttggctcag gtagtcgcgg
4381 aagatcttct ttctcctagc gtggtggacg tgggcgactt cacaatatca atcaacgagg
4441 gtcttccctc tggggtgccc tgcacctccc aatggaactc catcgcccac tggcttctca
4501 ctctctgtgc gctctctgaa gtcacaaacc tatcccctga taccatacag gctaactccc
4561 tcttctcttt ttatggtgat gatgaaattg ttagtacaga cataaaattg gacccagaga
4621 aattgacagc aaagctcaga gagtatgggt taaaaccaac ccgccctgac aaaactgaag
4681 gacctcttgt catctctgaa gacctgaatg gcctaacttt cctgcggaga actgtgaccc
4741 gtgacccagc tggttggttt ggaaaactgg agcagagttc aatactcagg caaatgtact
4801 ggactagggg tcccaaccat ggagacccat ctgaaacaat gattccacac tcccaaagac
4861 ccatacagtt gatgtcccta ctgggggagg ccgctctcca cggcccagcc ttttacagca
4921 aaatcagcaa gttggtcatt gcagagctaa aagaaggtgg catggatttt tacgtgccca
4981 gacaagagcc aatgttcaga tggatgagat tctcagatct gagcacgtgg gagggcgatc
5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa cccatctgat
5101 gggtccacag ccaacctcgt cccagaggtc aacaatgagg ttatggcttt ggagcccgta
5161 gttggtgccg ccattgcggc acctgtagcg ggccaacaaa atgtaattga cccctggatt
5221 agaaacaatt ttgtacaagc ccctggtgga gagtttacag tatcccctag aaacgctcca
5281 ggtgaaatac tatggagcgc gcccttaggc cctgatttga atccctacct ttcccatttg
5341 gccagaatgt acaatggtta tgcaggtggc tttgaagtgc aggtaatcct cgcggggaac
5401 gcgttcaccg ccgggaaaat catatttgca gcagtcccac caaatttccc aactgaaggt
5461 ttgagcccca gccaggtcac tatgttcccc cacataatag tagatgttag gcaattggaa
5521 cctgtgttga tccccttacc cgatgttagg aataatttct accattataa tcaatcaaat
5581 gaccccacca tcaaattgat agcaatgttg tacacaccac ttagggctaa taatgccggg
5641 gacgatgtct tcacagtttc ttgtcgagtt ctcacgagac catcccccga ttttgatttc
5701 atatttttgg tgccacccac agttgaatca agaactaaac cattctctgt cccagtttta
5761 actgttgagg agatgaccaa ttcaaggttc cccattcctt tggaaaagtt gttcacgggc
5821 cccagtagtg cctttgttgt tcaaccacaa aatggcaggt gcacgactga tggcgtgctc
5881 ctaggtacta cccaactgtc ccctgtcaac atctgcacct tcagagggga tgtcacccat
5941 attccaggca gtcgtaacta cacaatgaat ttggcctccc aaaattggaa cagttacgat
6001 ccaacagaag aaatcccagc ccctctagga actccagatt tcgtggggaa gattcaaggt
6061 gtgctcaccc aaaccacaag gacaaacggc tcgacccgcg gccacaaagc tacagtgtac
6121 actgggagcg ccgacttttc tccaaaactg ggtagagttc aatttgccac tgacacagac
6181 aatgattttg aaactaacca aaacacaaag ttcaccccag tcggtgttat ccaggatggt
6241 agtaccaccc cccgaaatga accccaacaa tgggtgctcc caagttactc aggcagaaac
6301 attcataatg tgcacctggc ccccgctgta gcccccactt tcccgggcga gcagctcctc
6361 ttcttcagat ccactatgcc cggatgcagc gggtacccca acatggattt ggactgtctg
6421 ctcccccagg aatgggtgca gtatttctac caagaggcag ccccagcaca atctgatgtg
6481 gctctgttaa gatttgtgaa tccagacaca ggtagggttt tgtttgagtg taagcttcat
6541 aaatcaggct atgttacagt ggctcacact ggccaacatg atttggttat cccccccaat
6601 ggttatttta gatttgattc ctgggtcaac cagttctaca cacttgcccc catgggaaat
6661 gggacggggc gtagacgtgc attataatgg ctggagcttt ctttgctgga ttggcatctg
6721 acgtccttgg ctctggactt ggttccctaa tcaatgctgg ggctggggcc atcaaccaaa
6781 aagttgaatt tgaaaataac agaaaattgc aacaagcttc cttccaattt agtagcaatc
6841 tacaacaggc ttcctttcaa catgacaaag agatgctcca agcacaaatt gaggccacca
6901 aaaagttgca acaggaaatg atgagagtta aacaagcaat gctcctagag ggtggattct
6961 ctgagacaga tgcagcccgt ggggcaatca acgcccccat gacaaaagct ttggactgga
7021 gcgggacaag gtactgggct cccgatgcta ggactacaac atataatgca ggccgctttt
7081 ccacccctca accctcgggg gcactaccag gaagagctaa tcttagggcc accgtccccg
7141 cccggggttc ttccagcacg tcttctaact cttctattgc tacttctgtg tattcaaatc
7201 aaaccacctc aacgagactt ggttctacag ctggttctgg taccagtgtc tcgagcctcc
7261 cgtcaactgc aaggactagg agttgggttg aggatcaaaa taggaatttg tcacctttca
7321 tgaggggggc ccacaacatc tcgtttgtca ccccaccatc tagcagatcc tctagccaag
7381 gcacagtctc aaccgtgccc aaagaagttt tggactcctg gactggcgct ttcaacacgc
7441 gcaggcagcc tctcttcgct cacattcgca agcgagggga gtcacgggtg taatgtgaaa
7501 agacaaaatt gatta
//