Typing tool
|
Complete norovirus genomes
JX445168 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..5084 ORF2: 5065..6687 ORF3: 6687..7493LOCUS JX445168 7515 bp RNA linear VRL 10-OCT-2012 DEFINITION Norovirus Hu/GII.4/AlbertaEI388/2011/CA non-structural polyprotein gene, partial cds; and major capsid protein and minor structural protein genes, complete cds. ACCESSION JX445168 VERSION JX445168.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/AlbertaEI388/2011/CA ORGANISM Norovirus Hu/GII.4/AlbertaEI388/2011/CA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7515) AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and Pang,X.L. TITLE Direct Submission JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health (ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada FEATURES Location/Qualifiers source 1..7515 /organism="Norovirus Hu/GII.4/AlbertaEI388/2011/CA" /mol_type="genomic RNA" /strain="Hu/GII.4/AlbertaEI388/2011/CA" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1238279" /country="Canada" /collection_date="Nov-2011" /note="genotype: GII.4" CDS <1..5084 /codon_start=3 /product="non-structural polyprotein" /protein_id="AFU55733.1" /translation="DASAAAVANSNNDIEKSSSDGVLSSMAVTFKRALGARPKQPPPR EKPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPEESNTAF SVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVEL APLSLYWRPVYTPQYLISPDTLKKLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM IQRTTGFYRPYQDWNRKPLPTMDDSKIKKVANIFLCALSSLFTRPIKDIIGKIRPLNI LNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELV PVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN ELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD IVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIAA SLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC DRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP GQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHE RLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTMPELKQA LKNVSIKKCQIVYSGCTYILESDGKGNVKVDRIQSAAVQINNELAGALHHLRSARIRY YVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVENTEEITSKDGCPKPKDD EEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE YLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIR KRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITS THVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLL IKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI YKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGGAPT LSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPK PSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHVRKNDCWNGESFT GKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRC ARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRA VLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSI AHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKP TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHGDPS ETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM RFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5065..6687 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AFU55734.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6687..7493 /codon_start=1 /product="minor structural protein" /protein_id="AFU55735.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRATVPARGSFSTSS NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" 3'UTR 7494..>7515 ORIGIN 1 acgacgcttc cgctgccgct gttgctaaca gcaacaacga catcgaaaaa tcttcaagtg 61 acggagtgct ttctagcatg gctgtcactt ttaaacgagc cctcggggcg cggcctaaac 121 agcctccccc gagggaaaaa ccacaaagac ccccacgacc acctactcca gaactggtca 181 aaaatattcc ccctccccca cccaacgggg aggatgaaat agtggtttct tatagtgtca 241 aagatggtgt ttccggcttg cctgaccttt ccaccgtcag gcaaccggaa gaatctaaca 301 cggccttcag tgtccctcca ctcaatcaga gggagaatag agatgctaag gagccactta 361 ctggaacaat tctggaaatg tgggacgggg aaatctacca ttatggcctg tatgtggagc 421 gaggtcttgt actaggtgtg cacaaaccac cagctgccat cagcctcgct aaggttgagc 481 tagcaccact ctccttgtac tggagacctg tgtacactcc tcagtacctc atctctccag 541 acactctcaa gaaattatcc ggagaaacgt ttccctacac agcctttgac aacaactgtt 601 atgccttttg ttgctgggtc ctggacctaa atgactcgtg gctgagcagg agaatgatcc 661 agagaacaac tggtttctac aggccctacc aagactggaa taggaaaccc cttcccacta 721 tggatgactc caaaataaag aaggtagcta acatattcct gtgtgctctg tcctcgctgt 781 tcactagacc cataaaagat ataataggga agataaggcc tcttaacatc ctcaacatct 841 tagcctcatg tgattggact tttgcaggta tagtggagtc cctgatactc ttggcagaac 901 tctttggagt tttctggaca cccccagatg tgtctgcgat gattgccccc ttacttggtg 961 actacgagct acaaggacct gaggaccttg cagtggagct cgtccccgtg gtgatggggg 1021 gaattggttt ggtgctagga ttcaccaaag agaagattgg gaaaatgttg tcatctgctg 1081 cgtccacctt gagagcttgt aaagaccttg gtgcatatgg gctagagatc ctaaagttgg 1141 ttatgaagtg gttcttcccg aagaaggagg aggcaaatga gctggctata gtgaggtcta 1201 tcgaggatgc agtcctagat ctcgaggcaa ttgaaaacaa ccatatgacc accttgctca 1261 aagacaaaga cagtctggca acctatatga gaacacttga ccttgaggag gagaaagcca 1321 ggaaactctc aaccaagtct gcctcacccg acatcgtggg cacaatcaac gctctcctgg 1381 cgagaatcgc tgccgcacgt tctctggtgc atcgagcgaa ggaggagctt tccagcagac 1441 caagacctgt ggtgttgatg atatcaggca ggccaggaat agggaagacc cacctcgcta 1501 gggaagtggc taagagaatc gcagcctccc ttacaggaga ccagcgtgtg ggcctcatcc 1561 cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga gagggtcgtc ctatgggacg 1621 attatggaat gagcaaccct attcacgacg ccctcaggct gcaagaactc gctgacactt 1681 gccccctcac tctaaactgt gacaggattg aaaataaagg aaaggtcttt gacagcgatg 1741 tcatcattat caccactaat ctggccaacc cagcaccact ggactatgtc aactttgaag 1801 catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc ccctgaagtc gaaaaggcga 1861 agcgtgactt cccaggccag cctgacatgt ggaagaacgc tttcagttct gatttctcac 1921 acataaaact agcactggcc ccacagggtg gtttcgacaa gaacgggaac accccacacg 1981 gaaagggcgt catgaagact ctcaccactg gctcccttat tgcccgggca tcagggctac 2041 tccatgagag gttagatgaa tttgaactac agggcccagc tctcaccacc ttcaatttcg 2101 atcgcaataa agtgcttgcc tttagacagc ttgctgctga aaataaatat ggattgatgg 2161 acacaatgag ggtcgggaaa cagctcaagg atgtcagaac catgccagaa ctcaaacaag 2221 cactcaagaa tgtttcaatc aagaagtgcc aaatagtgta tagtggttgc acctacatac 2281 ttgagtctga tggcaagggc aatgtgaaag ttgacagaat tcaaagcgcc gccgtgcaga 2341 tcaacaatga gctggctggt gccctgcacc atttgaggag cgccagaatc agatactatg 2401 tcaagtgtgt ccaggaggcc ctgtattcca tcattcaaat tgctggggct gcatttgtca 2461 ccacgcgcat tgccaagcgc atgaacatac aaaacctatg gtccaagcca caagtggaaa 2521 acacagagga gattaccagc aaggacgggt gcccaaaacc taaggatgat gaggagtttg 2581 tcatttcatc cgacgatatc aaaactgagg gcaagaaggg gaagaacaag actggccgcg 2641 gcaagaagca cacagcattt tcaagcaaag gcctcagtga tgaagagtac gatgagtaca 2701 agaggattag agaagaaagg aatggcaagt actccataga agagtacctt caggacaggg 2761 acaaatacta tgaggaggtg gccattgcca gggcgactga ggaagacttc tgtgaagagg 2821 aggaggccaa gatccggcaa aggatcttta ggccaacaag gaaacaacgc aaggaggaaa 2881 gagcctctct cggtctggtc acaggctctg aaattaggaa aagaaaccca gatgacttca 2941 aacccaaggg gaaattgtgg gctgacgatg acaggagtgt ggactacaat gagaaactca 3001 gttttgaggc cccaccaagc atctggtcga gaatagtcaa ctttggttcg ggctggggat 3061 tctgggtctc ccccagtctg ttcataacat caacccatgt cataccccag ggcgcaaagg 3121 agttctttgg agtccccatc aaacaaatac aggtacacaa gtcaggcgag ttctgtcgct 3181 tgagattccc aaaaccaatc aggactgatg tgacaggcat gatcttagaa gaaggcgcac 3241 ctgagggcac cgtggtcaca ctactcatca aaaggtccac tggggaactc atgcccctag 3301 cagctaggat ggggacccat gcgaccatga agatccaagg gcgcactgtt ggaggccaga 3361 tgggcatgct tctgacagga tccaacgcca agagcatgga cctgggtact acaccaggtg 3421 attgtggctg cccctatatc tacaagagag gtaatgacta tgtggtcatt ggagtccaca 3481 cggctgccgc acgtggggga aacactgtca tatgcgccac ccaggggagt gagggagagg 3541 ccacacttga aggtggtgac aacaagggga catactgtgg tgcaccaatc ttaggcccag 3601 ggggtgcccc aacacttagc accaagacca aattttggag atcgtccaca gcatcactcc 3661 cacctggcac ctatgaacca gcctatcttg gtggcaagga ccctagagtc aagggtggcc 3721 cttcactgca gcaagtcatg agggaacagt tgaagccatt cacagagcca aggggcaagc 3781 caccaaaacc aagtgtatta gaagctgcca agaagaccat catcaatgtc cttgaacaaa 3841 caattgatcc acctgagaaa tggtcgttcg cacaagcttg cgcgtccctt gacaagacca 3901 cttccagtgg tcatccgcac cacgtgcgga aaaacgactg ctggaacggg gagtccttca 3961 caggcaagct agcagaccag gcttccaagg ccaacctgat gtttgaagaa gggaagaaca 4021 tgaccccagt ctacacagct gcgctcaagg atgagttagt taaaactgac aaaatttatg 4081 gtaagatcaa gaagaggctt ctctggggct cggacttggc gaccatgatc cggtgtgctc 4141 gagcattcgg aggcctaatg gatgagctca aagcacactg tgtcacgctt cccattagag 4201 ttggcatgaa tatgaatgag gatggcccca tcatcttcga gaggcattcc aggtacacat 4261 atcactatga tgctgattac tctcgatggg attcaacaca acagagggcc gtgttggcag 4321 cagccctaga aatcatggtt aaattctccc cagaaccaca cttggctcag gtagtcgcgg 4381 aagatcttct ttctcctagc gtggtggacg tgggcgactt cacaatatca atcaacgagg 4441 gtcttccctc tggggtgccc tgcacctccc aatggaactc catcgcccac tggcttctca 4501 ctctctgtgc gctctctgaa gtcacaaacc tatcccctga taccatacag gctaactccc 4561 tcttctcttt ttatggtgat gatgaaattg ttagtacaga cataaaattg gacccagaga 4621 aattgacagc aaagctcaga gagtatgggt taaaaccaac ccgccctgac aaaactgaag 4681 gacctcttgt catctctgaa gacctgaatg gcctaacttt cctgcggaga actgtgaccc 4741 gtgacccagc tggttggttt ggaaaactgg agcagagttc aatactcagg caaatgtact 4801 ggactagggg tcccaaccat ggagacccat ctgaaacaat gattccacac tcccaaagac 4861 ccatacagtt gatgtcccta ctgggggagg ccgctctcca cggcccagcc ttttacagca 4921 aaatcagcaa gttggtcatt gcagagctaa aagaaggtgg catggatttt tacgtgccca 4981 gacaagagcc aatgttcaga tggatgagat tctcagatct gagcacgtgg gagggcgatc 5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa cccatctgat 5101 gggtccacag ccaacctcgt cccagaggtc aacaatgagg ttatggcttt ggagcccgta 5161 gttggtgccg ccattgcggc acctgtagcg ggccaacaaa atgtaattga cccctggatt 5221 agaaacaatt ttgtacaagc ccctggtgga gagtttacag tatcccctag aaacgctcca 5281 ggtgaaatac tatggagcgc gcccttaggc cctgatttga atccctacct ttcccatttg 5341 gccagaatgt acaatggtta tgcaggtggc tttgaagtgc aggtaatcct cgcggggaac 5401 gcgttcaccg ccggaaaaat catatttgca gcagtcccac caaatttccc aactgaaggt 5461 ttgagcccca gccaggtcac tatgttcccc cacataatag tagatgttag gcaattggaa 5521 cctgtgttga tccccttacc cgatgttagg aataatttct atcattataa tcaatcaaat 5581 gaccccacca tcaaattgat agcaatgttg tacacaccac ttagggctaa caatgccggg 5641 gacgatgtct tcacagtttc ttgtcgagtt ctcacgagac catcccccga ttttgatttt 5701 atatttttgg tgccacccac agttgaatca agaactaaac cattctctgt cccagtttta 5761 actgttgagg agatgaccaa ttcaaggttc cccattcctt tggaaaagtt gttcacgggc 5821 cccagtagtg cctttgttgt tcaaccacaa aatggcaggt gcacgactga tggcgtgctc 5881 ctaggtacca cccaactgtc ccctgtcaac atctgcacct tcagagggga tgtcacccat 5941 attccaggca gtcgtaacta cacaatgaat ttggcctccc aaaattggaa cagttacgac 6001 ccaacagaag aaatcccagc ccctctagga actccagatt tcgtggggaa gattcaaggt 6061 gtgctcaccc aaaccacaag gacaaatggc tcgacccgcg gccacaaagc tacagtgtac 6121 actgggagcg ccgacttttc tccaaaactg ggtagagttc aatttgccac tgacacagac 6181 aatgattttg aaactaacca aaacacaaag ttcaccccag tcggtgttat ccaggatggt 6241 agtaccaccc cccgaaatga accccaacaa tgggtgctcc caagttactc aggcagaaac 6301 attcataatg tgcacctggc ccccgctgta gcccccactt tcccgggcga gcagctcctc 6361 ttcttcagat ccactatgcc cggatgcagc gggtacccca acatggattt ggactgtctg 6421 ctcccccagg aatgggtgca gtatttttac caagaggcag ccccagcaca atctgatgtg 6481 gctctgttaa gatttgtgaa tccagacaca ggtagggttt tgtttgagtg taaacttcat 6541 aaatcaggct atgttacagt ggctcacact ggccaacatg atttggttat cccccccaat 6601 ggttatttta gatttgattc ctgggtcaac cagttctaca cacttgcccc catgggaaat 6661 gggacggggc gtagacgtgc attataatgg ctggagcttt ctttgctgga ttggcatctg 6721 acgtccttgg ctctggactt ggttccctaa tcaatgctgg ggctggggcc atcaaccaaa 6781 aagttgaatt tgaaaataac agaaaattgc aacaagcttc cttccaattt agtagcaatc 6841 tacaacaggc ttcctttcaa catgacaaag agatgctcca agcacaaatt gaggccacca 6901 aaaagttgca acaggaaatg atgagagtta aacaagcaat gctcctagag ggtggattct 6961 ctgagacaga tgcagcccgt ggggcaatca acgcccccat gacaaaagct ttggactgga 7021 gcgggacaag gtactgggct cccgatgcta ggactacaac atataatgca ggccgctttt 7081 ccacccctca accctcgggg gcactgccag gaagagctaa tcttagggct accgtccccg 7141 cccggggttc tttcagcacg tcttctaact cttctattgc tacttctgtg tattcaaatc 7201 aaaccacctc aacgagactt ggttctacag ctggttctgg taccagtgtc tcgagcctcc 7261 cgtcaactgc aaggactagg agttgggttg aggatcaaaa taggaatttg tcacctttca 7321 tgaggggggc ccacaacatc tcgtttgtca ccccaccatc tagcagatcc tctagccaag 7381 gcacagtctc aaccgtgccc aaagaagttt tggactcctg gactggcgct ttcaacacgc 7441 gcaggcagcc tctcttcgct cacattcgca agcgagggga gtcacgggtg taatgtgaaa 7501 agacaaaatt gatta //