Typing tool
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Typing tool
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Complete norovirus genomes
| JX445167 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..5084
ORF2: 5065..6687
ORF3: 6687..7493
LOCUS JX445167 7515 bp RNA linear VRL 10-OCT-2012
DEFINITION Norovirus Hu/GII.4/AlbertaEI065/2011/CA non-structural polyprotein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION JX445167
VERSION JX445167.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/AlbertaEI065/2011/CA
ORGANISM Norovirus Hu/GII.4/AlbertaEI065/2011/CA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7515)
AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and
Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health
(ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada
FEATURES Location/Qualifiers
source 1..7515
/organism="Norovirus Hu/GII.4/AlbertaEI065/2011/CA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/AlbertaEI065/2011/CA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1238270"
/country="Canada"
/collection_date="Jan-2011"
/note="genotype: GII.4"
CDS <1..5084
/codon_start=3
/product="non-structural polyprotein"
/protein_id="AFU55730.1"
/translation="DASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQPPPR
EKPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPEESNTAF
SVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLALGVHKPPAAISLARVEL
APLSLYWRPVYTPQYLISPDTLKKLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM
IQRTTGFFRPYQDWNRKPLPTMDDSKIKKVANIFLCALSSLFTRPIKDIIGKIRPLNI
LNILASCDWTFAGMVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELV
PVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN
ELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD
IVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIAA
SLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC
DRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP
GQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHE
RLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTMPELKQA
LKNVSIRKCQIVYSGCTYILESDGKGNVKVDRIQSAAVQTNNELAGALHHLRCARIRY
YVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQDLWSKPQVENTEETTSKDGCPKPKDD
EEFVISSDDIKTEGKKGKNKAGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIR
KRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITS
THVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLL
IKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI
YKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPT
LSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPK
PSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFT
GKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRC
ARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRA
VLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIRLDPEKLTAKLREYGLKP
TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHGDPS
ETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5065..6687
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AFU55731.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGSHNYTMNLASQNWNSYDPTEEVPAPLGTPDFVGKIQGVL
TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTNNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6687..7493
/codon_start=1
/product="minor structural protein"
/protein_id="AFU55732.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTRYWAPDARITTYNAGRFSTPQPSGALPGRANFRAAVPARGSSSTSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
3'UTR 7494..>7515
ORIGIN
1 acgacgcttc cgctgccgct gttgctaaca gcaacaacga caccgcaaaa tcttcaagtg
61 acggagtgct ttctagcatg gctgtcactt ttaaacgagc cctcggggcg cggcctaaac
121 agcctccccc gagggaaaaa ccacaaagac ccccacgacc acctactcca gaactggtta
181 aaaatattcc ccctccccca cccaacggag aggatgaaat agtggtctct tatagtgtca
241 aagatggtgt ttccggtttg cctgaccttt ccaccgtcag gcaaccggaa gaatctaaca
301 cggccttcag tgtccctcca ctcaatcaga gggagaatag agatgctaag gaaccactta
361 ctggaacaat tctggaaatg tgggacgggg aaatctacca ttatggcctg tatgtggagc
421 gaggtcttgc actaggtgtg cacaaaccac cagccgccat cagcctcgct agggttgagc
481 tagcaccact ctccttgtac tggagacctg tgtacactcc tcagtacctc atttctccag
541 acactctcaa gaaattatcc ggagaaacgt tcccctacac agcctttgac aacaactgtt
601 atgccttttg ttgctgggtc ctggacctaa atgactcgtg gctgagcagg agaatgatcc
661 agaggacaac tggtttcttc aggccctacc aagactggaa taggaaaccc cttcccacta
721 tggatgattc caaaataaag aaggtagcta acatattcct gtgtgctctg tcctcgctgt
781 tcaccagacc cataaaagat ataataggga agataaggcc tcttaacatc ctcaacatct
841 tagcctcatg tgattggact tttgcaggta tggtggagtc cctgatactc ttggcagaac
901 tctttggagt tttctggaca cccccagatg tgtctgcgat gattgccccc ttacttggtg
961 actacgagct acaaggacct gaggaccttg cagttgagct cgtccccgtg gtgatggggg
1021 gaattggttt ggtgctagga ttcaccaaag agaagattgg gaaaatgttg tcatctgctg
1081 cgtctacctt gagagcttgt aaagaccttg gtgcatatgg gctagagatc ctaaagttgg
1141 tcatgaagtg gttcttcccg aagaaggaag aggcaaatga gctggctata gtgaggtcta
1201 tcgaggatgc agtcctggac ctcgaggcaa ttgaaaacaa ccatatgacc accttgctca
1261 aagacaaaga tagtctggca acctatatga gaacacttga ccttgaggag gagaaagcca
1321 ggaaactctc aaccaagtct gcctcacccg acatcgtggg cacaatcaac gccctcctgg
1381 cgagaatcgc tgccgcacgt tctctggtgc accgagcgaa ggaggagctt tccagcagac
1441 caagacctgt ggtgttgatg atatcaggca ggccaggaat agggaagacc cacctcgcta
1501 gggaagtggc taagagaatc gcagcctccc ttacaggaga ccagcgtgtg ggcctcatcc
1561 cacgcaatgg tgtcgaccat tgggatgcgt acaaggggga gagggtcgtc ctatgggacg
1621 attatggaat gagcaaccct attcacgatg ccctcaggct gcaagaactc gctgacactt
1681 gccccctcac tctaaattgt gacaggatcg aaaataaagg aaaggtcttt gacagcgatg
1741 tcatcattat caccactaat ctggccaacc cagcgccact ggactatgtc aactttgaag
1801 catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc ccctgaagtc gaaaaggcga
1861 agcgtgactt cccaggccag cctgacatgt ggaagaacgc ttttagttct gatttctcac
1921 atataaaact agcactggcc ccacagggtg gtttcgacaa gaacgggaac accccacacg
1981 gaaagggcgt tatgaagact ctcaccactg gctcccttat tgcccgggca tcagggctac
2041 tccatgagag gttagatgaa tttgaactgc agggcccagc tctcaccact ttcaatttcg
2101 atcgcaataa ggtgcttgcc tttagacagc ttgctgctga aaacaaatat ggattgatgg
2161 acacaatgag agttgggaaa cagctcaagg atgtcagaac catgccagaa ctcaaacaag
2221 cactcaagaa tgtctcaatc aggaagtgcc aaatagtgta tagtggttgc acctacatac
2281 ttgagtctga tggcaagggc aatgtgaaag ttgacagaat ccaaagcgcc gccgtgcaga
2341 ccaacaatga gctggctggt gccctgcacc atttgaggtg cgccagaatc agatactatg
2401 tcaagtgtgt ccaggaggcc ctgtattcca tcattcaaat tgctggggct gcatttgtca
2461 ccacgcgcat tgccaagcgc atgaacatac aagacctatg gtccaagcca caagtggaaa
2521 acacagagga gactaccagc aaggacgggt gcccaaaacc taaggacgat gaggagtttg
2581 tcatttcatc cgacgacatc aaaactgagg gtaagaaagg gaagaacaag gctggccgcg
2641 gcaagaagca cacagcattt tcaagcaaag gcctcagtga tgaagagtac gatgagtaca
2701 agaggattag agaagaaagg aatggcaagt actccataga agagtacctt caggacaggg
2761 acaaatacta tgaggaggtg gccattgcca gggcgactga ggaagacttc tgtgaagagg
2821 aggaggccaa gatccggcag aggatcttta ggccaacaag gaaacaacgc aaggaggaaa
2881 gagcctctct cggtctggtc acaggctctg aaatcaggaa aagaaaccca gatgacttta
2941 aacccaaagg gaaattgtgg gctgacgatg acaggagtgt ggactacaat gagaaactca
3001 gttttgaggc cccaccaagc atctggtcga gaatagttaa ctttggttca ggctggggat
3061 tttgggtctc ccccagtctg ttcataacat caacccatgt cataccccag ggcgcaaagg
3121 agttctttgg agtccccatc aaacaaatac aggtacacaa gtcaggcgag ttctgtcgct
3181 tgagattccc aaaaccaatc aggactgatg tgacgggcat gatcttagaa gaaggcgcac
3241 ctgagggtac cgtggtcaca ctactcatca aaaggtccac tggggaactc atgcccctag
3301 cagctaggat ggggacccat gcgaccatga agatccaagg gcgtactgtt ggaggccaga
3361 tgggcatgct tctgacagga tccaacgcca agagcatgga cctgggtact acaccaggtg
3421 attgtggctg cccctatatc tacaagaggg gtaatgacta tgtggtcatt ggggtccaca
3481 cggctgccgc acgtgggggg aacactgtca tatgtgccac ccaggggagt gaaggagagg
3541 ctacacttga aggtggtgac aacaagggga catactgtgg tgcaccaatc ctaggtccag
3601 ggagtgcccc aacacttagc accaagacca aattctggag atcgtccaca gcatcactcc
3661 cacctggcac ctatgaacca gcctatcttg gtggcaagga ccctagggtc aagggtggcc
3721 cttcactgca gcaagtcatg agggaacagt tgaagccatt cacagagccc aggggcaagc
3781 caccaaaacc aagtgtatta gaagctgcca agaagaccat catcaatgtc cttgagcaaa
3841 caattgatcc acctgagaaa tggtcgttcg cacaagcttg cgcgtccctt gacaagacca
3901 cttccagtgg tcatccgcac catatgcgga aaaacgactg ttggaacggg gagtccttca
3961 caggcaagct agcagaccag gcttccaagg ccaacctgat gtttgaagaa gggaagaaca
4021 tgaccccagt ctacacagct gcgctcaagg atgagttagt taaaactgac aaaatttatg
4081 gcaagatcaa gaaaaggctt ctctggggct cggacttggc gaccatgatc cggtgtgctc
4141 gagcattcgg aggcctaatg gatgaactca aagcacactg tgttacactt cccattagag
4201 ttggcatgaa tatgaatgag gatggcccca tcatcttcga gaggcattcc aggtacacgt
4261 atcactatga tgctgattac tctcgatggg attcaacaca acagagagcc gtgttggcag
4321 cagctctaga aatcatggtt aaattctccc cagaaccaca cttggcccag gtagtcgcgg
4381 aggaccttct ttctcctagc gtggtggacg tgggcgactt cacaatatca atcaacgagg
4441 gtcttccctc tggggtgccc tgcacctccc aatggaactc catcgcccac tggcttctca
4501 ctctctgtgc gctctctgaa gtcacaaacc tgtcccctga taccatacag gctaactccc
4561 tcttctcttt ttatggtgat gatgaaattg ttagcacaga cataagattg gacccagaaa
4621 aattgacagc aaagctcaga gaatatgggt taaaaccaac ccgccctgac aaaactgaag
4681 ggccccttgt catctctgaa gacctgaatg gcctaacttt cctgcggaga actgtgaccc
4741 gcgacccagc tggttggttt ggaaaactgg agcagagttc aatactcagg caaatgtact
4801 ggactagggg tcccaaccat ggagacccat ctgaaacaat gatcccacac tcccaaagac
4861 ccatacaatt gatgtcccta ctgggggagg ccgctctcca cggcccagca ttttacagca
4921 aaatcagcaa attggtcatt gcagagctaa aagaaggtgg catggacttt tacgtgccca
4981 gacaagagcc aatgttcaga tggatgagat tctcagatct gagcacgtgg gagggcgatc
5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa cccatctgat
5101 gggtccacag ccaaccttgt cccagaggtc aacaatgagg ttatggcttt ggagcccgta
5161 gttggtgccg ccattgcggc acctgtggcg ggccaacaaa atgtaattga cccctggatt
5221 agaaacaatt ttgtacaagc ccctggtgga gagtttacag tgtcccctag aaacgctcca
5281 ggtgaaatac tatggagcgc gcccttaggc cctgatttga atccctacct ttcccatttg
5341 gccagaatgt acaatggtta tgcaggtggt tttgaagtgc aggtaatcct cgcggggaac
5401 gcgttcaccg ccgggaaaat catatttgca gcagtcccac caaatttccc aactgaaggt
5461 ttgagcccca gccaggtcac tatgttcccc cacataatag tagatgttag gcaattggaa
5521 cctgtgttga ttcccttacc cgatgttagg aataatttct accattataa ccaatcaaat
5581 gaccccacca tcaaattgat agcaatgttg tacacaccac ttagggctaa taatgccggg
5641 gacgatgtct tcacagtttc ttgtcgagtt ctcacgaggc catcccccga ttttgatttc
5701 atatttttgg tgccacccac agttgaatca agaactaaac cattctctgt cccagtttta
5761 actgttgagg agatgaccaa ttcaaggttc cccattcctt tggaaaagtt gttcacgggc
5821 cccagtagtg cctttgttgt tcaaccacaa aacggcaggt gcacgactga tggcgtgctc
5881 ctaggtacta cccaactgtc tcccgtcaac atctgcacct tcagagggga cgtcacccat
5941 attccaggca gtcacaacta cacaatgaat ttggcctccc aaaattggaa tagttacgat
6001 ccaacagaag aagtcccagc ccctctagga actccagatt tcgtggggaa gattcaaggt
6061 gtgctcaccc aaaccacaag gacaaatggt tcgacccgcg gccacaaagc cacagtgtac
6121 actgggagcg ccgacttttc tccaaaactg ggtagagttc aatttgccac tgacacaaac
6181 aatgattttg aaactaacca aaacacaaag ttcaccccag tcggtgttat ccaggatggt
6241 agtaccaccc cccgaaatga accccaacaa tgggtgctcc caagttattc aggcagaaac
6301 actcataatg tgcacctggc ccccgctgta gcccccactt tcccgggcga gcagctcctc
6361 ttcttcagat ctactatgcc cggatgcagc gggtacccca acatggactt ggactgtctg
6421 ctcccccagg aatgggtgca atatttctac caggaggcag ccccagcaca atctgatgtg
6481 gctctgctaa ggtttgtgaa tccagacaca ggtagggttt tgtttgagtg taagcttcat
6541 aaatcaggct atgttacagt ggctcacact ggccaacatg atttggttat ccctcccaat
6601 ggttatttca gatttgattc ctgggtcaac cagttctaca cacttgcccc catgggaaat
6661 gggacggggc gtagacgtgc attataatgg ctggagcttt ctttgccgga ttggcatctg
6721 acgtccttgg ctctggactt ggttccctaa tcaatgctgg ggctggggcc atcaaccaaa
6781 aagttgaatt tgaaaataac agaaaattgc aacaagcttc cttccaattt agtagcaatc
6841 tacaacaggc ttcctttcaa catgacaaag agatgctcca agcacaaatt gaggccacca
6901 aaaagttgca acaagaaatg atgagagtta aacaagcaat gctcctagag ggtggatttt
6961 ctgagacaga tgcagcccgt ggggcaatca acgcccccat gacaaaaact ttggactgga
7021 gcgggacaag gtactgggcc cccgatgcta ggattacaac atataatgca ggccgctttt
7081 ccacccccca accctcgggg gcactaccag gaagagctaa ttttagggct gctgtccccg
7141 cccggggttc ctccagcacg tcctctaact cttctattgc tacttctgtg tattcaaatc
7201 aaaccacctc aacgagactt ggttctacag ctggttctgg taccagtgtc tcgagcctcc
7261 cgtcaactgc aaggactagg agctgggttg aggatcaaaa taggaatttg tcacctttca
7321 tgaggggggc ccataacatc tcgtttgtca ccccaccatc tagcagatcc tctagccaag
7381 gcacagtctc aaccgtgccc aaagaagttt tggactcctg gactggcgct ttcaacacgc
7441 gcaggcagcc tctcttcgct cacattcgca agcgagggga gtcacgggtg taatgtgaaa
7501 agacaaaatt gatta
//