Typing tool
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Typing tool
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Complete norovirus genomes
| JX445166 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..5073
ORF2: 5054..6676
ORF3: 6676..7482
LOCUS JX445166 7504 bp RNA linear VRL 10-OCT-2012
DEFINITION Norovirus Hu/GII.4/AlbertaEI204/2010/CA non-structural polyprotein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION JX445166
VERSION JX445166.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/AlbertaEI204/2010/CA
ORGANISM Norovirus Hu/GII.4/AlbertaEI204/2010/CA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7504)
AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and
Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health
(ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada
FEATURES Location/Qualifiers
source 1..7504
/organism="Norovirus Hu/GII.4/AlbertaEI204/2010/CA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/AlbertaEI204/2010/CA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1238277"
/country="Canada"
/collection_date="Sep-2010"
/note="genotype: GII.4"
CDS <1..5073
/codon_start=1
/product="non-structural polyprotein"
/protein_id="AFU55727.1"
/translation="AAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQPPPREKP
QRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPEESNTAFSVP
PLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLALGVHKPPAAISLARVELAPL
SLYWRPVYTPQYLISPDTLKKLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQR
TTGFFRPYQDWNRKPLPTMDDSKIKKVANIFLCALSSLFTRPIKDIIGKIRPLNILNI
LASCDWTFAGMVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVV
MGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELA
IVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVG
TINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIAASLT
GDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRI
ENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQP
DMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLD
EFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTMPELKQALKN
VSIRKCQIVYSGCTYILESDGKGNVKVDRIQSAAVQTNNELAGALHHLRCARIRYYVK
CVQEALYSIIQIAGAAFVTTRIAKRMNIQDLWSKPQVENTEETTSKDGCPKPKDDEEF
VISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQ
DRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRN
PDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHV
IPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIKR
STGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKR
GNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPTLST
KTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPKPSV
LEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKL
ADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARA
FGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLA
AALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHW
LLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIRLDPEKLTAKLREYGLKPTRP
DKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHGDPSETM
IPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFS
DLSTWEGDRNLAPSFVNEDGVE"
CDS 5054..6676
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AFU55728.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGSHNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTNNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6676..7482
/codon_start=1
/product="minor structural protein"
/protein_id="AFU55729.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRAAVPARGSSSTSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
3'UTR 7483..>7504
ORIGIN
1 gctgccgctg ttgctaacag caacaacgac accgcaaaat cttcaagtga cggagtgctt
61 tctagcatgg ctgtcacttt taaacgagcc ctcggggcgc ggcctaaaca gcctcccccg
121 agggaaaaac cacaaagacc cccacgacca cctactccag aactggttaa aaatattccc
181 cctcccccac ccaacggaga ggatgaaata gtggtctctt atagtgtcaa agatggtgtt
241 tccggtttgc ctgacctttc caccgtcagg caaccggaag aatctaacac ggccttcagt
301 gtccctccac tcaatcagag ggagaataga gatgctaagg aaccacttac tggaacaatt
361 ctggaaatgt gggacgggga aatctaccat tatggcctgt atgtggagcg aggtcttgca
421 ctaggtgtgc acaaaccacc agccgccatc agcctcgcta gggttgagct agcaccactc
481 tccttgtact ggagacctgt gtacactcct cagtacctca tttctccaga cactctcaag
541 aaattatccg gagaaacgtt cccctacaca gcctttgaca acaactgtta tgccttttgt
601 tgctgggtcc tggacctaaa tgactcgtgg ctgagcagga gaatgatcca gaggacaact
661 ggtttcttca ggccctacca agactggaat aggaaacccc ttcccactat ggatgattcc
721 aaaataaaga aggtagctaa catattcctg tgtgctctgt cctcgctgtt caccagaccc
781 ataaaagata taatagggaa gataaggcct cttaacatcc tcaacatctt agcctcatgt
841 gattggactt ttgcaggtat ggtggagtcc ctgatactct tggcagaact ctttggagtt
901 ttctggacac ccccagatgt gtctgcgatg attgccccct tacttggtga ctacgagcta
961 caaggacctg aggaccttgc agttgagctc gtccccgtgg tgatgggggg aattggtttg
1021 gtgctaggat tcaccaaaga gaagattggg aaaatgttgt catctgctgc gtctaccttg
1081 agagcttgta aagaccttgg tgcatatggg ctagagatcc taaagttggt catgaagtgg
1141 ttcttcccga agaaggaaga ggcaaatgag ctggctatag tgaggtctat cgaggatgca
1201 gtcctggacc tcgaggcaat tgaaaacaac catatgacca ccttgctcaa agacaaagat
1261 agtctggcaa cctatatgag aacacttgac cttgaggagg agaaagccag gaaactctca
1321 accaagtctg cctcacccga catcgtgggc acaatcaacg ccctcctggc gagaatcgct
1381 gccgcacgtt ctctggtgca ccgagcgaag gaggagcttt ccagcagacc aagacctgtg
1441 gtgttgatga tatcaggcag gccaggaata gggaagaccc acctcgctag ggaagtggct
1501 aagagaatcg cagcctccct tacaggagac cagcgtgtgg gcctcatccc acgcaatggt
1561 gtcgaccatt gggatgcgta caagggggag agggtcgtcc tatgggacga ttatggaatg
1621 agcaacccta ttcacgatgc cctcaggctg caagaactcg ctgacacttg ccccctcact
1681 ctaaattgtg acaggatcga aaataaagga aaggtctttg acagcgatgt catcattatc
1741 accactaatc tggccaaccc agcgccactg gactatgtca actttgaagc atgctcgagg
1801 cgcatcgact tcctcgtgta tgcagaagcc cctgaagtcg aaaaggcgaa gcgtgacttc
1861 ccaggccagc ctgacatgtg gaagaacgct tttagttctg atttctcaca tataaaacta
1921 gcactggccc cacagggtgg tttcgacaag aacgggaaca ccccacacgg aaagggcgtt
1981 atgaagactc tcaccactgg ctcccttatt gcccgggcat cagggctact ccatgagagg
2041 ttagatgaat ttgaactgca gggcccagct ctcaccacct tcaatttcga tcgcaataag
2101 gtgcttgcct ttagacagct tgctgctgaa aacaaatatg gattgatgga cacaatgaga
2161 gttgggaaac agctcaagga tgtcagaacc atgccagaac tcaaacaagc actcaagaat
2221 gtctcaatca ggaagtgcca aatagtgtat agtggttgca cctacatact tgagtctgat
2281 ggcaagggca atgtgaaagt tgacagaatc caaagcgccg ccgtgcagac caacaatgag
2341 ctggctggtg ccctgcacca tttgaggtgc gccagaatca gatactatgt caagtgtgtc
2401 caggaggccc tgtattccat cattcaaatt gctggggctg catttgtcac cacgcgcatt
2461 gccaagcgca tgaacataca agacctatgg tccaagccac aagtggaaaa cacagaggag
2521 actaccagca aggacgggtg cccaaaacct aaggacgatg aggagtttgt catttcatcc
2581 gacgacatca aaactgaggg taagaaaggg aagaacaaga ctggccgcgg caagaagcac
2641 acagcatttt caagcaaagg cctcagtgat gaagagtacg atgagtacaa gaggattaga
2701 gaagaaagga atggcaagta ctccatagaa gagtaccttc aggacaggga caaatactat
2761 gaggaggtgg ccattgccag ggcgactgag gaagacttct gtgaagagga ggaggccaag
2821 atccggcaga ggatctttag gccaacaagg aaacaacgca aggaggaaag agcctctctc
2881 ggtctggtca caggctctga aatcaggaaa agaaacccag atgactttaa acccaaaggg
2941 aaattgtggg ctgacgatga caggagtgtg gactacaatg agaaactcag ttttgaggcc
3001 ccaccaagca tctggtcgag aatagtcaac tttggttcag gctggggatt ttgggtctcc
3061 cccagtctgt tcataacatc aacccatgtc ataccccagg gcgcaaagga gttctttgga
3121 gtccccatca aacaaataca ggtacacaag tcaggcgagt tctgtcgctt gagattccca
3181 aaaccaatca ggactgatgt gacgggcatg atcttagaag aaggcgcacc tgagggtacc
3241 gtggtcacac tactcatcaa aaggtccact ggggaactca tgcccctagc agctaggatg
3301 gggacccatg cgaccatgaa gatccaaggg cgtactgttg gaggccagat gggcatgctt
3361 ctgacaggat ccaacgccaa gagcatggac ctgggtacta caccaggtga ttgtggctgc
3421 ccctatatct acaagagggg taatgactat gtggtcattg gggtccacac ggctgccgca
3481 cgtgggggga acactgtcat atgtgccacc caggggagtg aaggagaggc tacacttgaa
3541 ggtggtgaca acaaggggac atactgtggt gcaccaatcc taggtccagg gagtgcccca
3601 acacttagca ccaagaccaa attctggaga tcgtccacag catcactccc acctggcacc
3661 tatgaaccag cctatcttgg tggcaaggac cctagggtca agggtggccc ttcactgcag
3721 caagtcatga gggaacagtt gaagccattc acagagccca ggggcaagcc accaaaacca
3781 agtgtattag aagctgccaa gaagaccatc atcaatgtcc ttgagcaaac aattgatcca
3841 cctgagaaat ggtcgttcgc acaagcttgc gcgtcccttg acaagaccac ttccagtggt
3901 catccgcacc atatgcggaa aaacgactgt tggaacgggg agtccttcac aggcaagctg
3961 gcagaccagg cttccaaggc caacctgatg tttgaagaag ggaagaacat gaccccagtc
4021 tacacagctg cgctcaagga tgagttagtt aaaactgaca aaatttatgg caagatcaag
4081 aaaaggcttc tctggggctc ggacttggcg accatgatcc ggtgtgctcg agcattcgga
4141 ggcctaatgg atgaactcaa agcacactgt gtcacacttc ccattagagt tggcatgaat
4201 atgaatgagg atggccccat catcttcgag aggcattcca ggtacacgta tcactatgat
4261 gctgattact ctcgatggga ttcaacacaa cagagagccg tgttggcagc agctctagaa
4321 atcatggtta aattctcccc agaaccacac ttggcccagg tagtcgcgga ggaccttctt
4381 tctcctagcg tggtggacgt gggcgacttc acaatatcaa tcaacgaggg tcttccctct
4441 ggggtgccct gcacctccca atggaactcc atcgcccact ggcttctcac tctctgtgcg
4501 ctctctgaag tcacaaacct gtcccctgat accatacagg ctaactccct cttctctttt
4561 tatggtgatg atgaaattgt tagcacagac ataagattgg acccagaaaa attgacagca
4621 aagctcagag aatatgggtt aaaaccaacc cgccctgaca aaactgaagg gccccttgtc
4681 atctctgaag acctgaatgg cctaactttc ctgcggagaa ctgtgacccg cgacccagct
4741 ggttggtttg gaaaactgga gcagagttca atactcaggc aaatgtactg gactaggggt
4801 cccaaccatg gagacccatc tgaaacaatg attccacact cccaaagacc catacaattg
4861 atgtccctac tgggggaggc cgctctccac ggcccagcat tttacagcaa aatcagcaaa
4921 ttggtcattg cagagctaaa agaaggtggc atggactttt acgtgcccag acaagagcca
4981 atgttcagat ggatgagatt ctcagatctg agcacgtggg agggcgatcg caatctggct
5041 cccagttttg tgaatgaaga tggcgtcgag tgacgccaac ccatctgatg ggtccacagc
5101 caaccttgtc ccagaggtca acaatgaggt tatggctttg gagcccgtag ttggtgccgc
5161 cattgcggca cctgtggcgg gccaacaaaa tgtaattgac ccctggatta gaaacaattt
5221 tgtacaagcc cctggtggag agtttacagt gtcccctaga aacgctccag gtgaaatact
5281 atggagcgcg cccttaggcc ctgatttgaa tccctacctt tcccatttgg ccagaatgta
5341 caatggttat gcaggtggtt ttgaagtgca ggtaatcctc gcggggaacg cgttcaccgc
5401 cgggaaaatc atatttgcag cagtcccacc aaatttccca actgaaggtt tgagccccag
5461 ccaggtcact atgttccccc acataatagt agatgttagg caattggaac ctgtgttgat
5521 tcccttaccc gatgttagga ataatttcta ccattataac caatcaaatg accccaccat
5581 caaattgata gcaatgttgt acacaccact tagggctaat aatgccgggg acgatgtctt
5641 cacagtttct tgtcgagttc tcacgaggcc atcccccgat tttgatttca tatttttggt
5701 gccacccaca gttgaatcaa gaactaaacc attctctgtc ccagttttaa ctgttgagga
5761 gatgaccaat tcaaggttcc ccattccttt ggaaaagttg ttcacgggcc ccagtagtgc
5821 ctttgttgtt caaccacaaa acggcaggtg cacgactgat ggcgtgctcc taggtactac
5881 ccaactgtct cccgtcaaca tctgcacctt cagaggggac gtcacccata ttccaggcag
5941 tcacaactac acaatgaatt tggcctccca aaattggaat agttacgatc caacagaaga
6001 aatcccagcc cctctaggaa ctccagattt cgtggggaag attcaaggtg tgctcaccca
6061 aaccacaagg acaaatggct cgacccgcgg ccacaaagcc acagtgtaca ctgggagcgc
6121 cgacttttct ccaaaactgg gtagagttca atttgccact gacacaaaca atgattttga
6181 aactaaccaa aacacaaagt tcaccccagt cggtgttatc caggatggta gtaccacccc
6241 ccgaaatgaa ccccaacaat gggtgctccc aagttattca ggcagaaaca ctcataatgt
6301 gcacctggcc cccgctgtag cccccacttt cccgggcgag cagctcctct tcttcagatc
6361 tactatgccc ggatgcagcg ggtaccccaa catggacttg gactgtctgc tcccccagga
6421 atgggtgcaa tatttctacc aggaggcagc cccagcacaa tctgatgtgg ctctgctaag
6481 gtttgtgaat ccagacacag gtagggtttt gtttgagtgt aagcttcata aatcaggcta
6541 tgttacagtg gctcacactg gccaacatga tttggttatc cctcccaatg gttatttcag
6601 atttgattcc tgggtcaacc agttctacac acttgccccc atgggaaatg ggacggggcg
6661 tagacgtgca ttataatggc tggagctttc tttgccggat tggcatctga cgtccttggc
6721 tctggacttg gttccctaat caatgctggg gctggggcca tcaaccaaaa agttgaattt
6781 gaaaataaca gaaaattgca acaagcttcc ttccaattta gtagcaatct acaacaggct
6841 tcctttcaac atgacaaaga gatgctccaa gcacaaattg aggccaccaa aaagttgcaa
6901 caagaaatga tgagagttaa acaagcaatg ctcctagagg gtggattttc tgagacagat
6961 gcagcccgtg gggcaatcaa cgcccccatg acaaaaactt tggactggag cgggacaagg
7021 tactgggccc ccgatgctag gactacaaca tataatgcag gccgcttttc caccccccaa
7081 ccctcggggg cactaccagg aagagctaat tttagggctg ctgtccccgc ccggggttcc
7141 tccagcacgt cctctaactc ttctattgct acttctgtgt attcaaatca aaccacctca
7201 acgagacttg gttctacagc tggttctggt accagtgtct cgagcctccc gtcaactgca
7261 aggactagga gctgggttga ggatcaaaat aggaatttgt cacctttcat gaggggggcc
7321 cataacatct cgtttgtcac cccaccatct agcagatcct ctagccaagg cacagtctca
7381 accgtgccca aagaagtttt ggactcctgg actggcgctt tcaacacgcg caggcagcct
7441 ctcttcgctc acattcgcaa gcgaggggag tcacgggtgt aatgtgaaaa gacaaaattg
7501 atta
//