Typing tool
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Typing tool
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Complete norovirus genomes
| JX445165 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..5084
ORF2: 5065..6687
ORF3: 6687..7493
LOCUS JX445165 7515 bp RNA linear VRL 10-OCT-2012
DEFINITION Norovirus Hu/GII.4/AlbertaEI119/2010/CA non-structural polyprotein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION JX445165
VERSION JX445165.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/AlbertaEI119/2010/CA
ORGANISM Norovirus Hu/GII.4/AlbertaEI119/2010/CA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7515)
AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and
Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health
(ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada
FEATURES Location/Qualifiers
source 1..7515
/organism="Norovirus Hu/GII.4/AlbertaEI119/2010/CA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/AlbertaEI119/2010/CA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1238273"
/geo_loc_name="Canada"
/collection_date="May-2010"
/note="genotype: GII.4"
CDS <1..5084
/codon_start=3
/product="non-structural polyprotein"
/protein_id="AFU55724.1"
/translation="DASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQPPPR
ETPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPEESNTAF
SVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLARVEL
TPLSLYWRPVYTPQYLISPDSLKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM
IQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKIKPLNI
LNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYVLQGPEDLAVELV
PVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN
ELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD
IVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIAA
SLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC
DRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP
GQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHE
RLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTMPELKQA
LKNVSIKKCQIVYSGCTYILESDGKGSVKVDRIQSASVQTNNELAGALHHLRCARIRY
YVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGCPKSKDD
EEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIR
KRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITS
THVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLL
IKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI
YKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPT
LSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPK
PSVLEAAKKTIINALEQTIDPPEKWSFAQACASLDKTTSSGHPHHTRKNDCWNGESFT
GKLADQASKANLMFEEGKSMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRC
ARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYTYHYDADYSRWDSTQQRA
VLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFAISINEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKP
TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHGDPS
ETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5065..6687
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AFU55725.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFSAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSTFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSAEFSPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6687..7493
/codon_start=1
/product="minor structural protein"
/protein_id="AFU55726.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQSSGALPGRANLRAAVPARGSSSISS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
3'UTR 7494..>7515
ORIGIN
1 acgacgcttc cgctgccgct gttgctaaca gcaacaacga caccgcaaaa tcttcaagtg
61 acggagtgct ttctagcatg gctgtcactt ttaaacgagc cctcggggca cggcctaaac
121 agcctccccc gagggaaaca ccacaaagac ccccacgacc acctactcca gaactggtta
181 aaaatattcc ccctcccccg cccaacggag aggatgaaat agtggtctct tatagtgtca
241 aagatggtgt ttccggtttg cctgaccttt ccaccgtcag acaaccggaa gaatctaaca
301 cggccttcag tgtccctcca ctcaatcaga gggagaatag agatgctaag gagccactta
361 ctggaacaat tctggaaatg tgggatggag aaatctacca ttatggcctg tatgtggagc
421 gaggtcttgt actaggtgtg cacaagccac cagctgccat cagcctcgct agggttgagc
481 taacaccact ctccttgtac tggagacctg tgtacactcc tcagtacctc atctctccag
541 actctctcaa gaaattacac ggagaaacgt tcccctacac agcctttgac aacaactgtt
601 atgccttttg ttgctgggtc ctggacctaa atgactcgtg gctgagcagg agaatgatcc
661 agaggacaac tggtttcttc aggccttacc aagactggaa taggaaaccc cttcccacta
721 tggatgattc caaattaaag aaggtagcca acatattcct gtgtgctctg tcctcgctgt
781 tcaccagacc cataaaggat ataataggga agataaagcc tcttaacatc ctcaacatct
841 tagcctcatg tgattggact tttgcaggca tagtggagtc cctgatactc ttggcagaac
901 tctttggagt tttctggaca cccccagatg tgtctgcgat gattgccccc ttactcggtg
961 actacgtgct acaaggacct gaggaccttg cagtggagct cgtccccgtg gtgatggggg
1021 gaattggttt ggtgctagga ttcaccaaag agaagattgg gaaaatgttg tcatctgctg
1081 cgtccaccct gagagcttgt aaagaccttg gtgcatatgg gctagagatc ctaaagttgg
1141 tcatgaagtg gttcttcccg aagaaggagg aagcaaatga gctggctata gtgaggtcta
1201 tcgaggatgc agtcctggac ctcgaggcaa ttgaaaacaa ccatatgacc accttgctca
1261 aagacaaaga cagtctggca acctatatga gaacacttga ccttgaggag gagaaagcca
1321 ggaaactctc aaccaagtct gcctcacctg acatcgtggg cacaatcaac gccctcctgg
1381 cgagaatcgc tgccgcacgt tctctggtgc accgagcgaa ggaggagctt tccagcagac
1441 caagacctgt ggtgttgatg atatcaggca gaccaggaat agggaagacc cacctcgcta
1501 gggaagtggc taagaggatc gcagcctccc ttacaggaga ccagcgtgtg ggcctcatcc
1561 cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga gagggtcgtc ctatgggacg
1621 attatggaat gagcaaccct attcacgatg ccctcaggct gcaagaactc gctgatactt
1681 gccccctcac tctaaactgt gacaggattg agaataaagg aaaggtcttt gacagcgatg
1741 tcatcattat caccactaat ctggccaacc cagcaccact ggactatgtc aactttgaag
1801 catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc ccctgaagtc gaaaaggcga
1861 agcgtgactt cccaggccag cctgacatgt ggaagaacgc cttcagttct gatttctcac
1921 acataaaact agcactggcc ccacagggtg gtttcgacaa gaacgggaac accccacacg
1981 gaaagggcgt catgaagact ctcaccactg gctcccttat tgcccgggca tcagggctgc
2041 tccatgagag gttagatgaa tttgaactac agggcccagc tctcaccacc ttcaattttg
2101 atcgcaataa agtgcttgcc tttagacaac ttgctgctga aaataagtat ggattgatgg
2161 acacaatgag agttgggaaa caactcaagg atgtcagaac catgccagaa ctcaaacaag
2221 cacttaagaa tgtctcaatc aagaagtgcc aaatagtgta tagtggttgc acctacatac
2281 ttgagtctga tggcaagggc agtgtgaaag ttgacagaat ccaaagcgcc tccgtgcaga
2341 ccaacaatga gctggctggt gccctgcacc atttgaggtg cgccagaatc agatactatg
2401 tcaagtgtgt ccaggaggcc ctgtattcca tcattcaaat tgctggggct gcatttgtca
2461 ccacgcgcat cgtcaagcgc atgaacatac aagacctatg gtccaagcca caagtggaaa
2521 acacagagga gaccaccagc aaggacgggt gcccaaaatc caaggatgat gaggagtttg
2581 tcatttcatc cgacgacatc aaaactgagg gcaagaaagg gaagaacaag actggccgcg
2641 gcaagaagca cacagccttt tcaagcaaag gcctcagtga tgaagagtac gatgagtaca
2701 agaggattag agaagaaagg aatggcaagt actctataga agagtacctt caggacaggg
2761 acaaatacta tgaggaggtg gccattgcca gggcgactga ggaagacttc tgtgaagagg
2821 aggaggccaa gattcggcaa aggatcttta ggccaacaag gaaacaacgc aaggaggaaa
2881 gagcttctct cggtctggtc acaggctctg aaattaggaa aagaaaccca gatgacttca
2941 aacccaaggg gaaattgtgg gctgacgatg acagaagtgt ggactacaat gagaaactca
3001 gctttgaggc cccaccaagc atctggtcga gaatagtcaa ctttggttca ggctggggat
3061 tctgggtctc ccccagtctg ttcataacat caacccatgt cataccccag ggcgcaaagg
3121 agttctttgg agtccccatc aaacaaatac aggtacacaa gtcaggcgag ttctgtcgct
3181 tgagattccc aaaaccaatc aggactgatg tgacgggcat gatcttggaa gaaggcgcac
3241 ctgagggcac cgtggtcaca ctactcatca aaaggtccac tggggaactc atgcccctag
3301 cagctaggat ggggacccat gcaaccatga agatccaagg gcgcactgtt ggaggccaga
3361 tgggcatgct tctgacaggg tccaacgcca agagcatgga cctgggtact acaccaggtg
3421 actgtggctg cccctatatc tataagagag gtaatgacta tgtggtcatt ggagtccaca
3481 cggctgccgc acgtggggga aacactgtca tatgtgccac ccaggggagt gaaggagagg
3541 ctacacttga aggaggtgac aacaagggga catactgtgg agcaccaatc ctaggcccag
3601 ggagtgcccc aacacttagc accaagacca aattctggag gtcgtccaca gcaccgctcc
3661 cacctggcac ctatgaacca gcctatcttg gtggcaagga ccctagagtc aagggtggcc
3721 cttcactgca gcaagtcatg agggaacagt tgaagccatt cacagagccc aggggcaaac
3781 caccaaagcc aagtgtatta gaagctgcca agaagaccat catcaatgcc cttgagcaaa
3841 caattgatcc acctgagaaa tggtcattcg cacaagcttg cgcgtccctt gacaagacca
3901 cttccagtgg tcatccgcac cacacgcgga aaaacgactg ctggaacggg gagtccttca
3961 caggcaagct ggcagaccag gcttccaagg ccaacctgat gtttgaagaa gggaagagca
4021 tgaccccagt ctacacagct gcgctcaagg atgagttagt taaaactgac aaaatttatg
4081 gtaaaatcaa gaagagactt ctctggggct cggacttggc gaccatgatc cgatgtgctc
4141 gagcattcgg aggcctaatg gatgaactca aagcacactg tgtcacactt cccattagag
4201 ttggtatgaa tatgaatgag gatggcccca tcatcttcga aaagcattcc aggtacacat
4261 accactatga tgctgattac tctcgatggg attcgacaca acagagagcc gtgttggcag
4321 cagctctaga aatcatggtt aaattctccc cagaaccaca tctggctcag gtagtcgcgg
4381 aagaccttct ttctcctagt gtggtggacg tgggcgactt cgcaatatca atcaacgagg
4441 gtcttccctc tggggtgccc tgcacctccc aatggaattc catcgcccac tggcttctca
4501 ctctctgtgc gctctctgaa gtcacaaact tgtcccctga taccatacag gccaactccc
4561 tcttctcttt ttatggtgat gatgaaatcg ttagcacaga cataaaattg gacccagaga
4621 aattgacagc aaagctcagg gaatatgggt taaaaccaac ccgccctgac aaaactgaag
4681 gaccccttgt catctctgaa gacttgaatg gcctaacttt cctgcggaga actgtgaccc
4741 gtgacccagc tggttggttt ggaaaactgg agcagagttc aatactcagg caaatgtact
4801 ggactagggg ccccaaccat ggagacccgt ctgaaacaat gattccacac tcccaaagac
4861 ccatacaatt gatgtcccta ctgggggagg ccgcactcca cggcccagca ttttacagca
4921 agatcagcaa gttggtcatt gcagagctaa aagaaggtgg catggatttt tacgtgccca
4981 ggcaagagcc aatgttcaga tggatgagat tctcagatct gagcacgtgg gagggcgatc
5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa cccatctgat
5101 gggtccacag ccaacctcgt cccagaggtc aataatgagg ttatggcttt ggagcccgtt
5161 gttggtgccg ccattgcggc acctgtagcg ggccaacaaa atgtaattga cccctggatt
5221 agaaataact ttgtacaagc ccctggtgga gagtttacag tatcccctag aaacgctcca
5281 ggtgaaatac tatggagcgc gcccttaggc cctgatttga atccctacct ttcccatttg
5341 gccagaatgt acaatggtta tgcaggtggt tttgaagtgc aggtaatcct cgcggggaac
5401 gcgttcaccg ccgggaaaat aatattttca gcagtcccac caaatttccc aactgaaggt
5461 ttgagcccca gccaggtcac tatgttcccc cacataatag tagatgttag gcaattggaa
5521 cctgtgttga tccccttacc cgatgttagg aataatttct accattataa tcaatcaaat
5581 gaccccacca taaaattgat agcaatgttg tatacaccac ttagggctaa taatgctggg
5641 gacgatgtct tcacagtttc ttgtcgagtt ctcacgagac catcccccga ttttgatttc
5701 atattcctag tgccacccac agttgaatca agaactaaac cattctctgt cccaattcta
5761 actgttgagg agatgaccaa ttcaaggttc cccattcctt tggaaaagct gttcacgggc
5821 cccagtagta cctttgttgt tcaaccacaa aacggcaggt gcacgactga tggcgtgctc
5881 ctaggtacca cccaactgtc tcctgtcaac atctgcacct tcagagggga tgtcacccat
5941 attacaggca gtcgtaacta tacaatgaat ctggcttccc aaaattggaa cagttatgac
6001 ccaacagaag agatcccagc ccctctaggg actccagatt tcgtggggaa gattcaaggc
6061 gtgctcaccc aaaccacaag gacggatggc tcgacccgcg gccacaaagc tacagtgtac
6121 actgggagcg ccgaattttc cccaaaactg ggtagagttc aatttgccac tgacacagac
6181 aatgattttg atgccaacca aaacacaaag ttcaccccag tcggtgttat ccaggatggt
6241 ggtactaccc accgaaatga accccaacaa tgggtgcttc caagttactc aggcagaaat
6301 actcacaatg tgcacctggc ccccgctgta gcccccactt ttccgggtga gcagctcctc
6361 tttttcaggt ctaccatgcc cggatgcagc gggtacccca acatggattt ggactgtcta
6421 ctcccccagg aatgggtgca gcatttctac caggaggcag ccccagcaca atctgatgtg
6481 gctctgctaa gatttgtgaa cccagacaca ggtagggttt tgtttgagtg taagcttcat
6541 aaatcaggct atgttacagt ggctcacact ggccaacatg atttggttat cccccccaat
6601 ggttatttta gatttgattc ctgggtcaac cagttctaca cacttgcccc catgggaaat
6661 gggacggggc gtagacgtgc attataatgg ctggagcttt ctttgctgga ttggcatctg
6721 acgtccttgg ctctggactt ggttccctga tcaatgctgg ggctggggcc atcaaccaaa
6781 aagttgaatt tgaaaacaac agaaaattgc aacaagcttc cttccaattt agtagcaatc
6841 tacaacaggc ttcctttcaa catgataaag agatgctcca agcacaaatt gaggccacca
6901 aaaagttgca acaggaaatg atgagagtta aacaagcaat gctcctagag ggtggattct
6961 ctgagacaga tgcagcccgt ggggcaatca acgcccccat gacaaaagct ttggactgga
7021 gcgggacaag gtattgggct cccgatgcta ggactacaac atataatgca ggccgctttt
7081 ccacccctca atcctcgggg gcactaccag gaagagctaa tcttagggct gctgtccccg
7141 cccggggttc ctctagtata tcttctaact cttctattgc tacttctgtg tactcaaatc
7201 aaaccacttc aacgagactt ggttctacag ctggttctgg taccagtgtc tcgagcctcc
7261 cgtcaactgc aaggactagg agctgggttg aggatcaaaa taggaatttg tcacctttca
7321 tgaggggggc ccacaacatc tcgtttgtca ccccaccatc tagcagatcc tctagccaag
7381 gcacagtctc aaccgtgccc aaagaagttt tggactcctg gactggcgct ttcaacacgc
7441 gcaggcagcc tctcttcgct cacatccgta agcgagggga gtcacgggtg taatgtgaaa
7501 agacaaaatt gatta
//