Typing tool
|
Complete norovirus genomes
JX445165 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..5084 ORF2: 5065..6687 ORF3: 6687..7493LOCUS JX445165 7515 bp RNA linear VRL 10-OCT-2012 DEFINITION Norovirus Hu/GII.4/AlbertaEI119/2010/CA non-structural polyprotein gene, partial cds; and major capsid protein and minor structural protein genes, complete cds. ACCESSION JX445165 VERSION JX445165.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/AlbertaEI119/2010/CA ORGANISM Norovirus Hu/GII.4/AlbertaEI119/2010/CA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7515) AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and Pang,X.L. TITLE Direct Submission JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health (ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada FEATURES Location/Qualifiers source 1..7515 /organism="Norovirus Hu/GII.4/AlbertaEI119/2010/CA" /mol_type="genomic RNA" /strain="Hu/GII.4/AlbertaEI119/2010/CA" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1238273" /country="Canada" /collection_date="May-2010" /note="genotype: GII.4" CDS <1..5084 /codon_start=3 /product="non-structural polyprotein" /protein_id="AFU55724.1" /translation="DASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQPPPR ETPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPEESNTAF SVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLARVEL TPLSLYWRPVYTPQYLISPDSLKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM IQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKIKPLNI LNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYVLQGPEDLAVELV PVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN ELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD IVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIAA SLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC DRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP GQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHE RLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTMPELKQA LKNVSIKKCQIVYSGCTYILESDGKGSVKVDRIQSASVQTNNELAGALHHLRCARIRY YVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGCPKSKDD EEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE YLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIR KRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITS THVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLL IKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI YKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPT LSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPK PSVLEAAKKTIINALEQTIDPPEKWSFAQACASLDKTTSSGHPHHTRKNDCWNGESFT GKLADQASKANLMFEEGKSMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRC ARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYTYHYDADYSRWDSTQQRA VLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFAISINEGLPSGVPCTSQWNSI AHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKP TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHGDPS ETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM RFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5065..6687 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AFU55725.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFSAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSTFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTDGSTRGHKATVYTGSAEFSPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6687..7493 /codon_start=1 /product="minor structural protein" /protein_id="AFU55726.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQSSGALPGRANLRAAVPARGSSSISS NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" 3'UTR 7494..>7515 ORIGIN 1 acgacgcttc cgctgccgct gttgctaaca gcaacaacga caccgcaaaa tcttcaagtg 61 acggagtgct ttctagcatg gctgtcactt ttaaacgagc cctcggggca cggcctaaac 121 agcctccccc gagggaaaca ccacaaagac ccccacgacc acctactcca gaactggtta 181 aaaatattcc ccctcccccg cccaacggag aggatgaaat agtggtctct tatagtgtca 241 aagatggtgt ttccggtttg cctgaccttt ccaccgtcag acaaccggaa gaatctaaca 301 cggccttcag tgtccctcca ctcaatcaga gggagaatag agatgctaag gagccactta 361 ctggaacaat tctggaaatg tgggatggag aaatctacca ttatggcctg tatgtggagc 421 gaggtcttgt actaggtgtg cacaagccac cagctgccat cagcctcgct agggttgagc 481 taacaccact ctccttgtac tggagacctg tgtacactcc tcagtacctc atctctccag 541 actctctcaa gaaattacac ggagaaacgt tcccctacac agcctttgac aacaactgtt 601 atgccttttg ttgctgggtc ctggacctaa atgactcgtg gctgagcagg agaatgatcc 661 agaggacaac tggtttcttc aggccttacc aagactggaa taggaaaccc cttcccacta 721 tggatgattc caaattaaag aaggtagcca acatattcct gtgtgctctg tcctcgctgt 781 tcaccagacc cataaaggat ataataggga agataaagcc tcttaacatc ctcaacatct 841 tagcctcatg tgattggact tttgcaggca tagtggagtc cctgatactc ttggcagaac 901 tctttggagt tttctggaca cccccagatg tgtctgcgat gattgccccc ttactcggtg 961 actacgtgct acaaggacct gaggaccttg cagtggagct cgtccccgtg gtgatggggg 1021 gaattggttt ggtgctagga ttcaccaaag agaagattgg gaaaatgttg tcatctgctg 1081 cgtccaccct gagagcttgt aaagaccttg gtgcatatgg gctagagatc ctaaagttgg 1141 tcatgaagtg gttcttcccg aagaaggagg aagcaaatga gctggctata gtgaggtcta 1201 tcgaggatgc agtcctggac ctcgaggcaa ttgaaaacaa ccatatgacc accttgctca 1261 aagacaaaga cagtctggca acctatatga gaacacttga ccttgaggag gagaaagcca 1321 ggaaactctc aaccaagtct gcctcacctg acatcgtggg cacaatcaac gccctcctgg 1381 cgagaatcgc tgccgcacgt tctctggtgc accgagcgaa ggaggagctt tccagcagac 1441 caagacctgt ggtgttgatg atatcaggca gaccaggaat agggaagacc cacctcgcta 1501 gggaagtggc taagaggatc gcagcctccc ttacaggaga ccagcgtgtg ggcctcatcc 1561 cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga gagggtcgtc ctatgggacg 1621 attatggaat gagcaaccct attcacgatg ccctcaggct gcaagaactc gctgatactt 1681 gccccctcac tctaaactgt gacaggattg agaataaagg aaaggtcttt gacagcgatg 1741 tcatcattat caccactaat ctggccaacc cagcaccact ggactatgtc aactttgaag 1801 catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc ccctgaagtc gaaaaggcga 1861 agcgtgactt cccaggccag cctgacatgt ggaagaacgc cttcagttct gatttctcac 1921 acataaaact agcactggcc ccacagggtg gtttcgacaa gaacgggaac accccacacg 1981 gaaagggcgt catgaagact ctcaccactg gctcccttat tgcccgggca tcagggctgc 2041 tccatgagag gttagatgaa tttgaactac agggcccagc tctcaccacc ttcaattttg 2101 atcgcaataa agtgcttgcc tttagacaac ttgctgctga aaataagtat ggattgatgg 2161 acacaatgag agttgggaaa caactcaagg atgtcagaac catgccagaa ctcaaacaag 2221 cacttaagaa tgtctcaatc aagaagtgcc aaatagtgta tagtggttgc acctacatac 2281 ttgagtctga tggcaagggc agtgtgaaag ttgacagaat ccaaagcgcc tccgtgcaga 2341 ccaacaatga gctggctggt gccctgcacc atttgaggtg cgccagaatc agatactatg 2401 tcaagtgtgt ccaggaggcc ctgtattcca tcattcaaat tgctggggct gcatttgtca 2461 ccacgcgcat cgtcaagcgc atgaacatac aagacctatg gtccaagcca caagtggaaa 2521 acacagagga gaccaccagc aaggacgggt gcccaaaatc caaggatgat gaggagtttg 2581 tcatttcatc cgacgacatc aaaactgagg gcaagaaagg gaagaacaag actggccgcg 2641 gcaagaagca cacagccttt tcaagcaaag gcctcagtga tgaagagtac gatgagtaca 2701 agaggattag agaagaaagg aatggcaagt actctataga agagtacctt caggacaggg 2761 acaaatacta tgaggaggtg gccattgcca gggcgactga ggaagacttc tgtgaagagg 2821 aggaggccaa gattcggcaa aggatcttta ggccaacaag gaaacaacgc aaggaggaaa 2881 gagcttctct cggtctggtc acaggctctg aaattaggaa aagaaaccca gatgacttca 2941 aacccaaggg gaaattgtgg gctgacgatg acagaagtgt ggactacaat gagaaactca 3001 gctttgaggc cccaccaagc atctggtcga gaatagtcaa ctttggttca ggctggggat 3061 tctgggtctc ccccagtctg ttcataacat caacccatgt cataccccag ggcgcaaagg 3121 agttctttgg agtccccatc aaacaaatac aggtacacaa gtcaggcgag ttctgtcgct 3181 tgagattccc aaaaccaatc aggactgatg tgacgggcat gatcttggaa gaaggcgcac 3241 ctgagggcac cgtggtcaca ctactcatca aaaggtccac tggggaactc atgcccctag 3301 cagctaggat ggggacccat gcaaccatga agatccaagg gcgcactgtt ggaggccaga 3361 tgggcatgct tctgacaggg tccaacgcca agagcatgga cctgggtact acaccaggtg 3421 actgtggctg cccctatatc tataagagag gtaatgacta tgtggtcatt ggagtccaca 3481 cggctgccgc acgtggggga aacactgtca tatgtgccac ccaggggagt gaaggagagg 3541 ctacacttga aggaggtgac aacaagggga catactgtgg agcaccaatc ctaggcccag 3601 ggagtgcccc aacacttagc accaagacca aattctggag gtcgtccaca gcaccgctcc 3661 cacctggcac ctatgaacca gcctatcttg gtggcaagga ccctagagtc aagggtggcc 3721 cttcactgca gcaagtcatg agggaacagt tgaagccatt cacagagccc aggggcaaac 3781 caccaaagcc aagtgtatta gaagctgcca agaagaccat catcaatgcc cttgagcaaa 3841 caattgatcc acctgagaaa tggtcattcg cacaagcttg cgcgtccctt gacaagacca 3901 cttccagtgg tcatccgcac cacacgcgga aaaacgactg ctggaacggg gagtccttca 3961 caggcaagct ggcagaccag gcttccaagg ccaacctgat gtttgaagaa gggaagagca 4021 tgaccccagt ctacacagct gcgctcaagg atgagttagt taaaactgac aaaatttatg 4081 gtaaaatcaa gaagagactt ctctggggct cggacttggc gaccatgatc cgatgtgctc 4141 gagcattcgg aggcctaatg gatgaactca aagcacactg tgtcacactt cccattagag 4201 ttggtatgaa tatgaatgag gatggcccca tcatcttcga aaagcattcc aggtacacat 4261 accactatga tgctgattac tctcgatggg attcgacaca acagagagcc gtgttggcag 4321 cagctctaga aatcatggtt aaattctccc cagaaccaca tctggctcag gtagtcgcgg 4381 aagaccttct ttctcctagt gtggtggacg tgggcgactt cgcaatatca atcaacgagg 4441 gtcttccctc tggggtgccc tgcacctccc aatggaattc catcgcccac tggcttctca 4501 ctctctgtgc gctctctgaa gtcacaaact tgtcccctga taccatacag gccaactccc 4561 tcttctcttt ttatggtgat gatgaaatcg ttagcacaga cataaaattg gacccagaga 4621 aattgacagc aaagctcagg gaatatgggt taaaaccaac ccgccctgac aaaactgaag 4681 gaccccttgt catctctgaa gacttgaatg gcctaacttt cctgcggaga actgtgaccc 4741 gtgacccagc tggttggttt ggaaaactgg agcagagttc aatactcagg caaatgtact 4801 ggactagggg ccccaaccat ggagacccgt ctgaaacaat gattccacac tcccaaagac 4861 ccatacaatt gatgtcccta ctgggggagg ccgcactcca cggcccagca ttttacagca 4921 agatcagcaa gttggtcatt gcagagctaa aagaaggtgg catggatttt tacgtgccca 4981 ggcaagagcc aatgttcaga tggatgagat tctcagatct gagcacgtgg gagggcgatc 5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa cccatctgat 5101 gggtccacag ccaacctcgt cccagaggtc aataatgagg ttatggcttt ggagcccgtt 5161 gttggtgccg ccattgcggc acctgtagcg ggccaacaaa atgtaattga cccctggatt 5221 agaaataact ttgtacaagc ccctggtgga gagtttacag tatcccctag aaacgctcca 5281 ggtgaaatac tatggagcgc gcccttaggc cctgatttga atccctacct ttcccatttg 5341 gccagaatgt acaatggtta tgcaggtggt tttgaagtgc aggtaatcct cgcggggaac 5401 gcgttcaccg ccgggaaaat aatattttca gcagtcccac caaatttccc aactgaaggt 5461 ttgagcccca gccaggtcac tatgttcccc cacataatag tagatgttag gcaattggaa 5521 cctgtgttga tccccttacc cgatgttagg aataatttct accattataa tcaatcaaat 5581 gaccccacca taaaattgat agcaatgttg tatacaccac ttagggctaa taatgctggg 5641 gacgatgtct tcacagtttc ttgtcgagtt ctcacgagac catcccccga ttttgatttc 5701 atattcctag tgccacccac agttgaatca agaactaaac cattctctgt cccaattcta 5761 actgttgagg agatgaccaa ttcaaggttc cccattcctt tggaaaagct gttcacgggc 5821 cccagtagta cctttgttgt tcaaccacaa aacggcaggt gcacgactga tggcgtgctc 5881 ctaggtacca cccaactgtc tcctgtcaac atctgcacct tcagagggga tgtcacccat 5941 attacaggca gtcgtaacta tacaatgaat ctggcttccc aaaattggaa cagttatgac 6001 ccaacagaag agatcccagc ccctctaggg actccagatt tcgtggggaa gattcaaggc 6061 gtgctcaccc aaaccacaag gacggatggc tcgacccgcg gccacaaagc tacagtgtac 6121 actgggagcg ccgaattttc cccaaaactg ggtagagttc aatttgccac tgacacagac 6181 aatgattttg atgccaacca aaacacaaag ttcaccccag tcggtgttat ccaggatggt 6241 ggtactaccc accgaaatga accccaacaa tgggtgcttc caagttactc aggcagaaat 6301 actcacaatg tgcacctggc ccccgctgta gcccccactt ttccgggtga gcagctcctc 6361 tttttcaggt ctaccatgcc cggatgcagc gggtacccca acatggattt ggactgtcta 6421 ctcccccagg aatgggtgca gcatttctac caggaggcag ccccagcaca atctgatgtg 6481 gctctgctaa gatttgtgaa cccagacaca ggtagggttt tgtttgagtg taagcttcat 6541 aaatcaggct atgttacagt ggctcacact ggccaacatg atttggttat cccccccaat 6601 ggttatttta gatttgattc ctgggtcaac cagttctaca cacttgcccc catgggaaat 6661 gggacggggc gtagacgtgc attataatgg ctggagcttt ctttgctgga ttggcatctg 6721 acgtccttgg ctctggactt ggttccctga tcaatgctgg ggctggggcc atcaaccaaa 6781 aagttgaatt tgaaaacaac agaaaattgc aacaagcttc cttccaattt agtagcaatc 6841 tacaacaggc ttcctttcaa catgataaag agatgctcca agcacaaatt gaggccacca 6901 aaaagttgca acaggaaatg atgagagtta aacaagcaat gctcctagag ggtggattct 6961 ctgagacaga tgcagcccgt ggggcaatca acgcccccat gacaaaagct ttggactgga 7021 gcgggacaag gtattgggct cccgatgcta ggactacaac atataatgca ggccgctttt 7081 ccacccctca atcctcgggg gcactaccag gaagagctaa tcttagggct gctgtccccg 7141 cccggggttc ctctagtata tcttctaact cttctattgc tacttctgtg tactcaaatc 7201 aaaccacttc aacgagactt ggttctacag ctggttctgg taccagtgtc tcgagcctcc 7261 cgtcaactgc aaggactagg agctgggttg aggatcaaaa taggaatttg tcacctttca 7321 tgaggggggc ccacaacatc tcgtttgtca ccccaccatc tagcagatcc tctagccaag 7381 gcacagtctc aaccgtgccc aaagaagttt tggactcctg gactggcgct ttcaacacgc 7441 gcaggcagcc tctcttcgct cacatccgta agcgagggga gtcacgggtg taatgtgaaa 7501 agacaaaatt gatta //