Typing tool
|
Complete norovirus genomes
JX445164 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..5084 ORF2: 5065..6687 ORF3: 6687..7493LOCUS JX445164 7515 bp RNA linear VRL 10-OCT-2012 DEFINITION Norovirus Hu/GII.4/AlbertaEI045/2010/CA non-structural polyprotein gene, partial cds; and major capsid protein and minor structural protein genes, complete cds. ACCESSION JX445164 VERSION JX445164.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/AlbertaEI045/2010/CA ORGANISM Norovirus Hu/GII.4/AlbertaEI045/2010/CA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7515) AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and Pang,X.L. TITLE Direct Submission JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health (ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada FEATURES Location/Qualifiers source 1..7515 /organism="Norovirus Hu/GII.4/AlbertaEI045/2010/CA" /mol_type="genomic RNA" /strain="Hu/GII.4/AlbertaEI045/2010/CA" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1238269" /country="Canada" /collection_date="Feb-2010" /note="genotype: GII.4" CDS <1..5084 /codon_start=3 /product="non-structural polyprotein" /protein_id="AFU55721.1" /translation="DASAAAVANSNNDTAKSSSDGMLSSMAVTFKRALGARPKQPPPR EKPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPEESNTAF SVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVEL APLSLYWRPVYTPQYLISPDTLKKLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM IQRTTGFFRPYQDWNRKPLPTMDDSKIKKVANIFLCALSSLFTRPIKDIIGKIRPLNI LNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELV PVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN ELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD IVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIAA SLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC DRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP GQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHE RLDEFELQGPAITTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKGVRTMPELKQA LKNVSIKKCQIVYSGCTYILESDGKGNVKVDRVQSAAVQTNNELAGALHHLRCARIRY YVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQDLWSKPQVENTEETTSKDGCPKPKDD EEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE YLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIR KRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITS THVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLL IKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI YKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPT LSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPK PSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFT GKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRC ARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRA VLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSI AHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKP TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHGDPS ETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM RFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5065..6687 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AFU55722.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6687..7493 /codon_start=1 /product="minor structural protein" /protein_id="AFU55723.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRATVPARGSSSTSS NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" 3'UTR 7494..>7515 ORIGIN 1 acgacgcttc cgctgccgct gttgctaaca gcaacaacga caccgcaaaa tcttcaagtg 61 acggaatgct ttctagcatg gctgtcactt ttaaacgagc cctcggggcg cggcctaaac 121 agcctccccc gagggaaaaa ccacaaagac ccccacgacc acctactcca gaactggtta 181 aaaatattcc ccctccccca cccaacggag aggatgaaat agtggtttct tatagtgtca 241 aagatggtgt ttccggcttg cctgaccttt ccaccgtcag gcaaccggaa gaatctaaca 301 cggccttcag tgtccctcca ctcaatcaga gggagaatag agatgctaag gagccactta 361 ctggaacaat tctggaaatg tgggacgggg aaatctacca ctatggcctg tatgtggagc 421 gaggtcttgt actaggtgtg cacaaaccac cagctgccat cagcctcgct aaggttgagc 481 tagcaccact ctccttgtac tggagacctg tgtacactcc tcagtacctc atctctccag 541 acactctcaa gaaattatcc ggagaaacgt tcccctacac agcctttgac aacaactgtt 601 atgccttttg ttgctgggtc ctggacctaa atgactcgtg gctgagcagg agaatgatcc 661 agaggacaac tggtttcttc aggccctacc aagactggaa caggaaaccc cttcccacta 721 tggatgactc caaaataaag aaggtagcta acatattcct gtgtgctctg tcctcgctgt 781 tcaccagacc cataaaagat ataataggga agataaggcc tcttaacatc ctcaacatct 841 tagcctcatg tgattggact tttgcaggca tagtggagtc cctgatactc ttggcagaac 901 tctttggagt tttctggaca cccccagatg tgtctgcgat gattgccccc ttacttggtg 961 actacgagct acaaggacct gaggaccttg cagtggagct cgtccccgtg gtgatggggg 1021 gaattggttt ggtgttagga ttcaccaaag agaagattgg gaaaatgttg tcatctgctg 1081 cgtccacctt gagagcttgt aaagaccttg gtgcatatgg gctagagatc ctaaagttgg 1141 tcatgaagtg gttcttcccg aagaaggagg aggcaaatga gctggctata gtgaggtcta 1201 tcgaggatgc agtcctggat ctcgaggcaa ttgaaaacaa ccatatgacc accttgctca 1261 aagacaaaga cagcctggca acctatatga gaacacttga ccttgaggag gagaaagcca 1321 ggaaactctc aaccaagtct gcctcacccg acatcgtggg cacaatcaac gccctcctgg 1381 cgagaatcgc tgccgcacgt tctctggtgc atcgagcgaa ggaggagctt tccagcagac 1441 caagacctgt ggtgttgatg atatcaggca ggccaggaat agggaagacc cacctcgcta 1501 gggaagtggc taagagaatc gcagcctccc ttacaggaga ccagcgtgtg ggcctcatcc 1561 cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga gagggtcgtc ctatgggacg 1621 attatggaat gagcaaccct attcacgatg ccctcaggct gcaagaactc gctgacactt 1681 gccccctcac tctaaactgt gacaggattg aaaataaagg aaaggtcttt gacagcgatg 1741 tcatcatcat caccactaat ctggccaacc cagcaccact ggactatgtc aactttgaag 1801 catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc ccctgaagtc gaaaaggcga 1861 agcgtgactt cccaggccag cctgacatgt ggaagaacgc tttcagttct gatttctcac 1921 acataaaact agcactggcc ccacagggtg gtttcgacaa gaacgggaac accccacacg 1981 gaaagggcgt catgaagact ctcaccactg gctcccttat tgcccgggca tcagggctac 2041 tccatgagag gttagatgaa tttgaactac agggcccagc tatcaccacc ttcaatttcg 2101 atcgcaataa agtgcttgcc tttagacagc ttgctgctga aaataaatat gggttgatgg 2161 acacaatgag agttgggaaa cagctcaagg gtgtcagaac catgccagaa ctcaaacaag 2221 cactcaagaa tgtctcaatc aagaagtgcc aaatagtgta tagtggttgc acctacatac 2281 ttgagtctga tggcaagggc aatgtgaaag ttgacagagt ccaaagcgcc gccgtgcaga 2341 ccaacaatga gctggctggt gccctgcacc atctgaggtg cgccagaatc agatactatg 2401 tcaagtgtgt ccaggaggcc ctgtattcca tcattcaaat tgctggggct gcatttgtca 2461 ccacgcgcat tgccaagcgc atgaacatac aagacctatg gtccaagcca caagtggaaa 2521 acacagagga gaccaccagc aaggacgggt gcccaaaacc taaggatgat gaggagtttg 2581 tcatttcatc tgacgacatc aaaactgagg gtaagaaagg gaagaacaaa actggccgcg 2641 gcaagaagca cacagcattt tcaagcaaag gcctcagtga tgaagagtac gatgagtaca 2701 agaggattag agaagaaagg aatggcaagt actccataga agagtacctt caggacaggg 2761 acaaatacta tgaggaggtg gccattgcca gggcgactga ggaagacttc tgtgaagagg 2821 aggaggccaa gatccggcaa aggatcttta ggccaacaag gaaacaacgc aaggaggaaa 2881 gagcctctct cggtctggtc acaggctctg aaattaggaa aagaaaccca gatgacttca 2941 aacccaaggg gaaattgtgg gctgacgatg acaggagtgt ggactacaat gagaaactca 3001 gttttgaggc cccaccaagc atctggtcga gaatagtcaa ctttggttca ggctggggat 3061 tctgggtctc ccccagtctg ttcataacat caacccatgt cataccccag ggcgcaaagg 3121 agttctttgg agtccccatc aaacaaatac aggtacacaa gtcaggcgag ttctgtcgct 3181 tgagattccc aaaaccaatc aggactgatg tgacgggcat gatcttagaa gaaggcgcac 3241 ctgagggcac cgtggtcaca ctactcatca aaaggtccac tggggaactc atgcccctag 3301 cagctaggat ggggacccat gcgaccatga agatccaagg gcgcactgtt ggaggccaga 3361 tgggcatgct tctgacagga tccaacgcca agagcatgga cctgggtact acaccaggtg 3421 attgtggctg cccctatatc tacaagagag gtaatgacta tgtggtcatt ggagtccaca 3481 cggctgccgc acgtggggga aacactgtca tatgtgccac ccaggggagt gaaggagagg 3541 ctacacttga aggtggtgac aacaagggga catactgtgg tgcaccaatc ctaggcccag 3601 ggagtgcccc aacactcagc accaagacca aattctggag atcgtccaca gcatcactcc 3661 cacctggcac ctatgaacca gcctatcttg gtggcaagga ccctagagtc aagggtggcc 3721 cttcactgca gcaagtcatg agggaacagt tgaagccatt cacagagcca aggggcaagc 3781 caccaaaacc aagtgtatta gaagctgcca agaagaccat catcaatgtc cttgagcaaa 3841 caattgatcc acctgagaaa tggtcgttcg cacaagcttg cgcgtccctt gacaagacca 3901 cttccagtgg tcatccgcac cacatgcgga aaaacgactg ctggaacggg gagtccttca 3961 caggcaagct ggcagaccag gcttccaagg ccaacctgat gtttgaagaa gggaagaaca 4021 tgaccccagt ctacacagct gcgctcaagg atgagttagt taaaactgac aaaatttatg 4081 gtaagatcaa gaagaggctt ctctggggct cggacttggc gaccatgatc cggtgtgctc 4141 gagcattcgg aggcctaatg gatgaactca aagcacactg tgtcacactt cccattagag 4201 ttggcatgaa tatgaatgag gatggcccca tcatcttcga gaggcattcc aggtacacat 4261 atcactatga tgctgattac tctcgatggg attcaacaca acagagagcc gtgttggcag 4321 cagctctgga aatcatggtt aaattctccc cagaaccaca tttggctcag gtagtcgcgg 4381 aagaccttct ttctcctagc gtggtggacg tgggcgattt cacaatatca atcaacgagg 4441 gtcttccctc tggggtgccc tgcacctccc aatggaactc catcgcccac tggcttctca 4501 ctctttgtgc gctctctgaa gtcacaaacc tatcccctga caccatacag gctaactccc 4561 tcttctcttt ttatggtgat gatgaaattg ttagcacaga cataaaattg gacccagaga 4621 aattgacagc aaagctcagg gagtatgggt taaaaccaac ccgccctgac aaaactgaag 4681 gaccccttgt catctctgaa gacctgaatg gcctaacttt cctgcggaga actgtgaccc 4741 gcgacccagc tggttggttt ggaaaattgg agcagagttc aatactcagg caaatgtatt 4801 ggactagggg tcccaaccat ggagaccctt ctgaaacaat gatcccacac tcccaaagac 4861 ccatacaatt gatgtcccta ctgggggagg ccgctctcca cggcccagca ttttacagta 4921 aaatcagtaa attggtcatt gcagagctta aagaaggtgg catggatttt tacgtgccca 4981 gacaagagcc aatgttcaga tggatgagat tctcagatct gagcacgtgg gagggcgatc 5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa cccatctgat 5101 gggtccacag ccaacctcgt cccagaggtc aacaatgagg ttatggcttt ggagcccgta 5161 gttggtgccg ccattgcggc acctgtagcg ggccaacaaa atgtaattga cccctggatt 5221 agaaacaatt ttgtacaagc ccctggtgga gagtttacag tatcccctag aaacgctcca 5281 ggtgaaatac tatggagcgc gcccttaggc cctgatttga atccctacct ttcccatttg 5341 gccagaatgt acaatggtta tgcaggtggt tttgaagtgc aggtaatcct cgcggggaac 5401 gcgttcaccg ccgggaaaat catatttgca gcagtcccac caaatttccc aactgaaggt 5461 ttgagcccca gccaggtcac tatgttcccc cacataatag tagatgttag gcaattggaa 5521 cctgtgttga tccccttacc cgatgttagg aataatttct accattataa tcaatcaaat 5581 gactccacca tcaaattgat agcaatgttg tacacaccac ttagggctaa taatgccggg 5641 gacgatgtct tcacagtttc ttgtcgagtt ctcacgagac catcccccga ttttgatttt 5701 atatttttgg tgccacccac agttgaatca agaactaaac cattctctgt cccagtttta 5761 actgttgagg agatgaccaa ttcaaggttc cccattcctt tggaaaagtt gttcacgggc 5821 cccagtagtg cctttgttgt tcaaccacaa aacggcaggt gcacgactga tggcgtgctc 5881 ctaggtacta ctcaactgtc tcctgtcaac atctgcacct tcagagggga tgtcacccat 5941 attccaggca gtcgtaacta cacaatgaat ttggcctccc aaaattggaa cagttacgat 6001 ccaacagaag aaatcccagc ccctctagga actccagatt tcgtggggaa gattcaaggt 6061 gtgctcaccc aaaccacaag gacaaatggc tcgacccgcg gccacaaagc tacagtgtac 6121 actgggagcg ccgacttttc tccaaaactg ggtagagttc aatttgccac tgacacagac 6181 aatgattttg aaactaacca aaacacaaag ttcactccag tcggcgttat ccaggatggt 6241 agtactaccc cccgaaatga accccaacaa tgggtgctcc caagttactc aggcagaaac 6301 attcacaatg tgcacctggc ccccgctgta gcccccactt tcccgggcga gcagctcctc 6361 ttcttcagat ctactatgcc cggatgcagc gggtacccca acatggactt ggactgtctg 6421 ctcccccagg aatgggtgca gtacttctac caggaggcag ccccagcaca atctgatgtg 6481 gctctgttaa gatttgtgaa tccagacaca ggtagggttt tgtttgagtg taagcttcat 6541 aaatcaggct atgttacagt ggctcatact ggccaacatg atttggttat cccccccaat 6601 ggttatttta gatttgattc ctgggtcaac cagttctaca cacttgcccc catgggaaat 6661 gggacggggc gtagacgtgc attataatgg ctggagcttt ctttgctgga ttggcatctg 6721 acgtccttgg ctctggactt ggttccctaa tcaatgctgg ggctggggcc atcaaccaaa 6781 aagttgaatt tgaaaataac aggaaattgc aacaagcttc cttccaattt agtagcaatc 6841 tacaacaggc ttcctttcaa catgacaaag agatgctcca agcacaaatt gaggccacca 6901 aaaagttgca acaggaaatg atgagagtta aacaagcaat gctcctagag ggtggattct 6961 ctgagacaga tgcagcccgt ggggcaatca acgcccccat gacaaaaact ttggactgga 7021 gcgggacaag gtactgggct cccgatgcta ggactacaac atataatgca ggccgctttt 7081 ccacccctca accctcgggg gcactaccag gaagagccaa tcttagggct actgtccccg 7141 cccggggttc ctccagcacg tcttctaact cttctattgc tacttctgtg tattcaaatc 7201 aaaccacctc aacgagactt ggttctacag ctggttctgg taccagtgtc tcgagcctcc 7261 cgtcaactgc aaggactagg agctgggttg aggatcaaaa taggaatttg tcacctttca 7321 tgaggggggc tcacaacatc tcgtttgtca ccccaccatc tagcagatcc tctagccaag 7381 gcacagtctc aaccgtgccc aaagaagttt tggactcctg gactggcgct ttcaacacgc 7441 gcaggcagcc tctcttcgct cacattcgca agcgagggga gtcacgggtg taatgtgaaa 7501 agacaaaatt gatta //