Typing tool
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Typing tool
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Complete norovirus genomes
| JX445161 | GII.4 New Orleans | |
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| GII.P4 Hunter |
ORF1: 1..5063
ORF2: 5044..6666
ORF3: 6666..7472
LOCUS JX445161 7494 bp RNA linear VRL 10-OCT-2012
DEFINITION Norovirus Hu/GII.4/AlbertaEI210/2008/CA non-structural polyprotein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION JX445161
VERSION JX445161.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/AlbertaEI210/2008/CA
ORGANISM Norovirus Hu/GII.4/AlbertaEI210/2008/CA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7494)
AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and
Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health
(ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada
FEATURES Location/Qualifiers
source 1..7494
/organism="Norovirus Hu/GII.4/AlbertaEI210/2008/CA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/AlbertaEI210/2008/CA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1238278"
/country="Canada"
/collection_date="Apr-2008"
/note="genotype: GII.4"
CDS <1..5063
/codon_start=3
/product="non-structural polyprotein"
/protein_id="AFU55712.1"
/translation="ANSNNDTVKSSSDGVLSSMAVTFKRALGARPKQPPPREIPQRPP
RPPTPELIKNIPPPPPNGEDDIVVSYSVKDGVSGLPDLSTVRQPEESNTAFSVPPLNQ
RENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLARVELTPLSLYW
RPVYTPQYLISPDALKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMVQRTTGF
FRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKLRPLNILNILASC
DWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGI
GLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAIVRS
IEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINA
LLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIAASLTGDQR
VGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKG
KVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWK
NAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEFEL
QGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTMPELKQALKNISIK
KCQIVYSGSTYTLESDGKGNVKVDRVQSASVQTNNELAGALHHLRCARIRYYVRCAQE
ALYSIIQIAGAAFVTTRIVKRMNIQNLWSKPQVENTEETTSKDGCPKPKDDEEFVISS
DDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDK
YYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDF
KPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQG
AKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIKRSTGE
LMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDY
VVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPKLSTKTKF
WRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAA
KKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQA
SKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGL
MDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAALE
IMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTL
CALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTE
GPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGSNHEDPSETMIPHS
QRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLST
WEGDRNLAPSFVNEDGVE"
CDS 5044..6666
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AFU55713.1"
/translation="MKMASNDATPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG
DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6666..7472
/codon_start=1
/product="minor structural protein"
/protein_id="AFU55714.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWSPDARTTTYNAGHFSTPQPSGALPGRTNLRAAVPARGSSSISS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
3'UTR 7473..>7494
ORIGIN
1 ttgctaacag caacaacgac accgtaaaat cttcaagtga cggagtgctt tctagcatgg
61 ctgtcacttt caaacgagcc ctcggggcgc ggcctaaaca gcctcccccg agggaaatac
121 cacaaagacc cccacgacca cccactccag aattgatcaa aaacatcccc cctcccccac
181 ccaacggaga ggatgacata gtggtttctt atagtgtcaa agatggtgtc tctggtttgc
241 ctgatctttc caccgtcagg caaccggaag aatctaacac ggccttcagt gtccctccac
301 tcaatcagag ggagaataga gatgctaagg agccactgac tggaacaatt ctggaaatgt
361 gggatggaga aatctaccat tatggccttt atgtagagcg aggtcttgtg ctaggtgtgc
421 acaaaccacc agctgccatt agcctcgcta gggtcgaact aacaccactc tccttgtact
481 ggagacctgt gtatactccc cagtacctca tctctccaga cgcactcaag aaactacacg
541 gagagacgtt cccctacaca gcctttgata acaactgcta tgccttttgt tgttgggtcc
601 tggacctaaa cgactcgtgg ctgagtagga gaatggtcca gaggacaact ggcttcttca
661 gaccctacca agactggaat aggaaacccc tccccactat ggatgactcc aagttaaaga
721 aggtagctaa catattcctg tgtgcactgt cttcgctatt caccaggcct ataaaagata
781 taatagggaa gctaaggcct cttaacatcc tcaacatcct ggcctcatgt gattggactt
841 ttgcaggcat agtggagtcc ttgatactct tggcagaact ctttggagtt ttctggacac
901 ccccagatgt gtctgcgatg attgccccct tactcggtga ttacgagcta cagggacctg
961 aggaccttgc agtggagctc gtccctgtag tgatgggggg aattggtttg gtgctaggat
1021 tcaccaaaga gaagattgga aaaatgttgt catctgctgc atccaccttg agagcttgta
1081 aagatcttgg tgcatatggg ctagagatcc taaagttggt catgaagtgg ttcttcccga
1141 agaaagagga agcaaacgaa ctggctatag tgagatccat cgaggatgca gtcctggatc
1201 tcgaggcaat tgaaaacaac catatgacca ccttgctcaa agacaaagac agtctggcaa
1261 cctacatgag aacccttgac cttgaggagg agaaagccag gaaactctca accaagtctg
1321 cttcacctga catcgtgggc acaatcaacg cccttctggc gagaatcgct gctgcacgtt
1381 ctctggtgca tcgagcgaaa gaggaacttt ctagcagacc aagacctgta gtgttgatga
1441 tatcaggcag accaggaata gggaagaccc accttgctag ggaagtggct aagaggatcg
1501 cagcctccct tacaggagac cagcgtgtag gcctcgtccc acgcaatggc gtcgaccatt
1561 gggatgcgta caagggggag agggtcgttc tatgggacga ctatggaatg agcaatccta
1621 tccacgatgc cctcagattg caagaactcg ctgacacttg tcccctcacc ctaaactgtg
1681 acaggattga gaacaaagga aaggtctttg acagcgatgt catcattatt accaccaatc
1741 tggctaaccc agcaccactg gactatgtca actttgaagc atgctcgagg cgcatcgact
1801 tcctcgtgta tgcagaagcc cctgaggtcg aaaaggcgaa gcgtgacttc ccaggccaac
1861 ccgacatgtg gaagaacgcc ttcagttctg atttctcaca cataaaacta acattggctc
1921 cacagggtgg cttcgacaag aacgggaaca ccccacacgg gaagggcgtc atgaagactc
1981 tcaccaccgg ctcccttatt gcccgggcat cagggctact ccatgagagg ctagatgaat
2041 ttgaactaca gggcccaact ctcaccacct tcaactttga tcgcaataaa gtgcttgcct
2101 ttagacaact tgctgctgag aacaaatatg ggttgatgga cacaatgaaa gttgggaggc
2161 agctcaagga tgtcagaaca atgccggagc tcaagcaagc actcaagaat atttcaatca
2221 agaagtgcca gatagtgtat agtggtagca cctacacact tgagtctgat ggcaagggca
2281 atgtgaaggt tgacagagtt caaagcgcct ccgtgcagac caacaatgag ctggctggcg
2341 ccctacacca tctaaggtgc gccagaataa gatactatgt caggtgtgcc caggaggccc
2401 tgtactccat catccaaatt gctggggctg catttgtcac cacgcgcatc gtcaagcgca
2461 tgaacataca aaacctatgg tctaagccac aagtggaaaa tacagaggag actaccagca
2521 aggacgggtg tccaaaaccc aaagatgatg aggagttcgt catttcatcc gacgacatca
2581 agactgaggg caagaaaggg aaaaacaaga ctggccgcgg caagaagcac acagcctttt
2641 caagcaaagg tctcagtgat gaagagtacg atgagtacaa gaggattaga gaagaaagaa
2701 atggcaagta ctccatagaa gagtaccttc aggacaggga caaatactac gaggaggtgg
2761 ccattgccag ggcgactgag gaagacttct gtgaagagga ggaggccaag atccggcaaa
2821 ggatcttcag gccaacaagg aaacaacgca aggaggaaag agcttccctc ggtttagtta
2881 caggttctga aattaggaaa agaaatccag atgatttcaa acccaagggg aaactgtggg
2941 ctgacgatga cagaagtgta gactacaatg agaaactcag ttttgaagcc ccaccaagca
3001 tctggtcgag gatagtcaac tttggttcag gttggggatt ctgggtctcc cccagtttgt
3061 tcataacatc aacccatgtc ataccccagg gagcaaagga gttctttgga gtccccatca
3121 aacaaattca ggtacataag tcaggcgaat tctgtcgctt gagattccca aaaccaatca
3181 ggactgatgt gacgggcatg atcttagaag aaggtgcacc cgagggcacc gtggtcacac
3241 tactcatcaa aaggtccact ggagaactca tgcccctagc agctaggatg ggaacccatg
3301 caaccatgaa aatccaagga cgcactgttg gaggtcaaat gggcatgctt ctgacaggat
3361 ccaacgccaa aagcatggat ctgggtacca caccaggtga ttgtggctgt ccctacatct
3421 acaagagagg aaatgactat gtggtcattg gagtccacac ggctgccgct cgtgggggca
3481 acactgtcat atgtgccacc caggggagtg agggagaggc tacacttgaa ggtggtgaca
3541 ataaagggac atactgtggt gcaccaatcc taggcccagg gagtgcccca aaacttagca
3601 ccaagaccaa attctggaga tcgtccacag caccactccc acctggcacc tatgaaccag
3661 cctatcttgg tggcaaggac cccagagtca agggtggccc ttcactgcag caggtcatga
3721 gggatcagct gaagccattc acagagccca ggggcaagcc accaaagcca agtgtgttgg
3781 aagctgctaa gaaaaccatc atcaatgtcc ttgagcaaac aatcgatcca cctgagaaat
3841 ggtcgttcgc acaagcttgc gcgtcccttg acaagaccac ctccagtggc catccgcatc
3901 acatgcggaa aaacgactgc tggaacgggg agtccttcac aggcaagctg gcagaccagg
3961 cttccaaggc caacctgatg tttgaagaag ggaagaacat gacgccagtc tatacagctg
4021 cgcttaagga tgaattagtt aaaactgaca aaatttatgg caaaatcaag aagaggctcc
4081 tctggggctc ggatttggcg accatgatcc ggtgtgctcg agcattcgga ggcctaatgg
4141 atgagctcaa agcgcactgt gtcacacttc ccattagagt tggtatgaat atgaatgagg
4201 atggccccat catcttcgag aggcactcca ggtacacata ccactatgat gctgattact
4261 ctcgatggga ttcaacacaa cagagagccg tgttggcagc agctctagaa atcatggtta
4321 agttctcccc agaaccacat ttggcccagg tagtcgcaga agaccttctt tctcctagcg
4381 tggtggacgt gggtgacttc acaatatcaa ttaacgaggg tcttccctct ggggtgccct
4441 gcacctccca atggaactcc atcgcccact ggcttctcac cctctgtgcg ctctctgaag
4501 ttacaaactt atctcctgac accatacaag ctaattccct cttctctttt tatggtgatg
4561 atgaaattgt tagcacagac ataaaattgg acccagaaaa gttgacagca aagctcaggg
4621 aatatgggtt aaagccaacc cgccccgaca aaactgaagg accccttgtc atctctgaag
4681 acttgaatgg cctgactttc ctgcggagaa ctgtgacccg cgacccagct ggttggtttg
4741 gaaaactgga gcagagttca atactcaggc aaatgtactg gactaggggt tccaaccacg
4801 aagacccatc tgaaacaatg attccacact cccaaagacc catacaactg atgtccctac
4861 tgggggaggc cgcactccac ggcccagcat tctacagcaa aatcagcaag ttagtcattg
4921 cagagctaaa agaaggtggc atggattttt acgtgcccag acaagagcca atgttcagat
4981 ggatgagatt ctcagatctg agcacgtggg agggcgatcg caatctggct cccagttttg
5041 tgaatgaaga tggcgtcgaa tgacgccacc ccatctgatg ggtccacagc caacctcgtc
5101 ccagaggtca acaatgaggt tatggctttg gagcccgttg ttggtgccgc cattgcggca
5161 cctgtagcgg gccaacaaaa tgtaattgac ccctggatta gaaacaattt tgtacaagcc
5221 cctggtggag agtttacagt atcccctaga aacgctccag gtgaaatact atggagcgcg
5281 cccctaggcc ctgatttgaa tccctacctt tcccatttgg ccagaatgta caatggttat
5341 gcaggtggtt ttgaagtgca ggtaatcctc gcggggaacg cgttcaccgc cggaaaaatc
5401 atatttgcag cagtcccacc aaatttccca actgaaggct tgagccccag ccaggtcact
5461 atgttccccc acataatagt agatgtcagg caactggaac ctgtgttgat tcccttaccc
5521 gatgttagga ataatttcta tcactacaat caatcaaacg accccaccat caaattgata
5581 gcaatgttgt acacaccact tagggctaat aatgctgggg acgatgtctt cacagtttct
5641 tgtcgggttc tcacgagacc atcccccgat tttgatttca tatttttagt gccacccaca
5701 gttgagtcaa gaactaaacc attctctgtc ccaattttaa ctgttgagga gatgaccaat
5761 tcaagattcc ccattccttt ggaaaagttg ttcacgggtc ccagtagtgc ctttgttgtt
5821 caaccacaaa acggcaggtg cacgactgat ggcgtgctcc taggtactac ccaactgtct
5881 cctgtcaaca tctgcacctt cagaggggat gtcacccata ttacaggtag tcgtaactac
5941 acaatgaatt tggctactca aaattggaac agttatgacc caacagaaga aatcccagcc
6001 cctctaggaa ctccagattt cgtggggaag atccaaggtg tgctcaccca aaccacaagg
6061 gcagatggct ctacccgcgg ccacaaagct acagtgtaca ctgggagcgc cgattttgct
6121 ccaaaactgg gtagagttca atttgccact gacacagata atgattttga tgctaaccaa
6181 aacacaaagt tcaccccagt cggtgtcatc caggatggtg atactgccca ccgaaatgaa
6241 ccccaacaat gggtactccc aagttactca ggcagaaata gtcacaatgt gcacctggcc
6301 cccgctgtag cccccacttt tccgggtgag caacttctct tcttcagatc tactatgccc
6361 ggatgcagcg ggtaccccaa catggatttg gactgtctgc tcccccagga atgggtgcag
6421 tacttctatc aagaggcagc cccagcacaa tctgatgtgg ctctgctaag atttgtgaat
6481 ccagacacag gtagggtttt gtttgagtgt aagcttcata aatcaggcta tgttacagtg
6541 gctcacaccg gccaacatga cttggttatc ccccccaatg gttattttag atttgattcc
6601 tgggtcaacc agttctacac acttgccccc atgggaaatg gaacggggcg tagacgtgca
6661 ttataatggc tggagctttc tttgctggat tggcatctga cgtccttggc tctggacttg
6721 gttctctgat caatgccggg gctggggcca tcaaccaaaa agttgaattt gaaaataaca
6781 gaaaattgca acaagcttcc ttccaattta gcagcaatct acaacaggct tcctttcaac
6841 atgataaaga gatgctccaa gcacaaattg aggccaccaa aaagttgcaa caggaaatga
6901 tgagagttaa acaggcaatg ctcctagagg gtggattctc tgagacagat gcagcccgtg
6961 gggcaatcaa cgcccccatg acaaaggctt tggactggag tgggacaagg tactggtctc
7021 ccgatgctag gactacaaca tacaatgcag gccacttttc caccccccaa ccctcggggg
7081 cactgccagg aagaactaat cttagggctg ctgtccccgc tcggggttcc tccagcatat
7141 cttctaactc ttctactgct acctctgtgt actcaaatca aactacttca acgagacttg
7201 gttctacagc tggttctggt accagtgtct cgagcctccc gtcaactgca aggactagga
7261 gctgggttga ggatcaaaat aggaatttgt cacctttcat gaggggggcc cacaacatat
7321 cgtttgtcac cccaccatct agcagatcct ctagccaagg cacagtctca accgtgccca
7381 aagaagtttt ggactcctgg actggcgctt tcaacacgcg caggcagcct ctcttcgctc
7441 acattcgtaa gcgaggggag tcacgggcat aatgtgaaaa gacaaaattg atta
//