Typing tool
|
Complete norovirus genomes
JX445158 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 1..5084 ORF2: 5065..6687 ORF3: 6687..7493LOCUS JX445158 7515 bp RNA linear VRL 10-OCT-2012 DEFINITION Norovirus Hu/GII.4/AlbertaEI603/2006/CA non-structural polyprotein gene, partial cds; and major capsid protein and minor structural protein genes, complete cds. ACCESSION JX445158 VERSION JX445158.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/AlbertaEI603/2006/CA ORGANISM Norovirus Hu/GII.4/AlbertaEI603/2006/CA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7515) AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and Pang,X.L. TITLE Direct Submission JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health (ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada FEATURES Location/Qualifiers source 1..7515 /organism="Norovirus Hu/GII.4/AlbertaEI603/2006/CA" /mol_type="genomic RNA" /strain="Hu/GII.4/AlbertaEI603/2006/CA" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1238284" /country="Canada" /collection_date="Dec-2006" /note="genotype: GII.4" CDS <1..5084 /codon_start=3 /product="non-structural polyprotein" /protein_id="AFU55703.1" /translation="DATAAAAANSNNDTAKSSSDKMFSSMAVTFKRALGARPKQPPPR EIPQRPPRPPTPELVKKIPPPPPNGEDEVVVSYSAKDGVSGLPELSTVMQPEETNTAF SVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVEL TPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM IQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLRPLNI INILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPEDLVVELV PVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN ELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD IVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIAA SLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC DRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP GQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHE RLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKTMPELKQA LKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLRCARIRY YVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEGATNKDGCPKPKDD EEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE YLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIR KRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITS THVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLL IKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI YKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPILGPGSAPK LSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPK PSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFT GKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRC ARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRA VLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSI AHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKP TRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPS ESMIPHSQRPIQLMSLLGEAALHGPTFYGKISKLVIAELKEGGMDFYVPRQEPMFRWM RFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5065..6687 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AFU55704.1" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6687..7493 /codon_start=1 /product="minor structural protein" /protein_id="AFU55705.1" /translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSDLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTSQPSGALPGRINPRTPTPARGSPSTSS NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" 3'UTR 7494..>7515 ORIGIN 1 acgacgctac cgctgccgct gctgctaaca gcaacaacga caccgcaaaa tcttcaagtg 61 acaaaatgtt ttctagcatg gctgtcactt ttaaacgagc cctcggggcg cggcctaaac 121 agcccccccc gagggaaata ccacaaagac ccccacgacc gcctactcca gaactggtca 181 aaaagatccc tcctcccccg cccaacggag aggatgaagt agtggtttct tatagtgcca 241 aagatggcgt ttccggttta cctgagcttt ccaccgtcat gcaaccggaa gaaaccaata 301 cggccttcag tgtccctcca ctcaatcaga gggagaatag ggatgctaag gaaccactga 361 ctggaacaat tctggaaatg tgggatggag aaatctacca ttatggcctg tatgttgagc 421 gaggtcttgt gctgggtgtg cacaaaccac cagctgccat tagcctcgcc aaggtcgaac 481 taacaccact ctccttgttc tggagacctg tgtacactcc tcagtacctc atctctccag 541 acactctcaa gaaattacac ggagaaacat ttccctacac agcctttgac aacaactgct 601 atgccttttg ttgctgggtc ctggatctaa acgactcgtg gctgagtagg agaatgatcc 661 agagaacaac tggcttcttc agaccctacc aagattggaa taggaaaccc ctccccacca 721 tggatgattc caaattaaag aaggtagcta acatattcct gtgcaccctg tcttcgctat 781 tcaccaggcc cataaaagac ataataggga agttaaggcc tctcaacatc atcaacatcc 841 tggcttcatg tgattggact ttcgcaggca tagtggagtc cttgatactc ttggcggagc 901 tctttggagt cttctggaca cccccagatg tgtctgcgat gattgccccc ttactcggtg 961 acttcgagtt acaaggacct gaggaccttg tagtggagct cgtccctgta gtaatggggg 1021 gaattggttt ggtgctagga ttcaccaaag agaagattgg aaaaatgtta tcatctgctg 1081 catccacctt gagagcttgt aaagatcttg gtgcatatgg gctagagatc ctaaagttag 1141 tcatgaagtg gttcttcccg aagaaagagg aagcaaatga actggctatg gtgagatcca 1201 tcgaggatgc agtactggac cttgaggcaa ttgaaaataa ccatatgacc accttgctca 1261 aagacaaaga cagcctggca acctatatga gaacccttga cctcgaggaa gagaaagcca 1321 gaaaactctc aaccaagtct gcttcacctg acatcgtggg cacaatcaac gcccttctgg 1381 cgagaatcgc cgctgcacgc tccctggtgc accgagcgaa ggaggagctt tccagcagac 1441 caagacctgt agtcttgatg atatcaggca gaccaggaat agggaagacc caccttgcta 1501 gggaagtggc taagagaatc gcagcctccc tcacaggaga ccagcgtgta ggcctcatcc 1561 cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga gagggtcgtc ctatgggacg 1621 actatggaat gagcaatccc atccacgacg ccctcaggct gcaagaactc gctgacactt 1681 gccccctcac tctaaattgt gacaggattg agaataaagg aaaggtcttt gacagcgatg 1741 tcatcattat cactactaat ctggccaacc cagcaccact ggactatgtc aactttgaag 1801 cgtgctcgag gcgcatcgat ttcctcgtgt atgcagaagc ccccgaagtc gaaaaggcga 1861 agcgtgactt cccgggccaa cctgacatgt ggaaaaacgc ttttagttct gatttctcac 1921 acataaaatt ggcactggct ccacaaggtg gctttgataa gaacgggaac accccacacg 1981 ggaagggcgt catgaagact ctcaccactg gctccctcat tgcccgggca tcagggctgc 2041 tccatgagag attggatgag tttgaactac agggcccagc tcttaccacc ttcaactttg 2101 accgcaacaa agtgcttgcc ttcaggcagc ttgctgctga aaacaaatac gggttgatgg 2161 acacaatgaa agttgggagg cagctcaagg atgtcaaaac catgccagaa cttaaacaag 2221 cactcaagaa tatctcaatc aagaagtgcc agattgtgta tagtggttgc acctacacac 2281 ttgagtctga tggcaagggc aatgtgaaag ttgacagagt tcagagcacc tccgttcaga 2341 ccaacaatga gctggctggc gccctgcacc atctaaggtg cgccagaatc aggtactatg 2401 tcaagtgtgt tcaggaggcc ctgtattcta tcatccagat tgctggggct gcatttgtca 2461 ccacgcgcat catcaagcgt gtgaacattc aagacttatg gtccaagcca caagtggaaa 2521 acacagaggg ggctaccaac aaggacgggt gcccaaaacc caaagatgat gaggagttcg 2581 tcatttcatc tgacgacatt aaaactgagg gtaagaaagg gaagaacaag actggccgtg 2641 gcaagaagca cacagccttc tcaagtaaag gtctcagtga tgaagagtat gatgagtaca 2701 agagaattag agaggaaagg aatggcaagt actccataga agagtacctt caggacaggg 2761 acaaatacta tgaggaggtg gccattgcca gggcgaccga ggaagacttc tgtgaagagg 2821 aggaggccaa gatccggcaa aggatcttca gaccaacaag gaaacaacgc aaggaagaaa 2881 gagcttctct cggtttagtc acaggttctg aaattaggaa aagaaaccca gaagacttca 2941 aacccaaggg gaaactatgg gctgacgatg acagaagtgt ggactacaat gaaaagctca 3001 gttttgaggc cccaccaagc atctggtcaa ggatagtcaa ctttggctca ggttggggct 3061 tctgggtctc ccccagcctg ttcataacat caacccacgt cataccccag ggcgcaaagg 3121 agttctttgg agtccccatc aaacaaattc aggtacacaa gtcaggcgaa ttctgtcgct 3181 tgagattccc aaaaccaatc aggactgatg tgactggcat gatcttggaa gaaggtgcgc 3241 ccgaaggcac cgtggtcaca ctactcatca aaaggtctac tggagaactc atgcccctag 3301 cagctagaat ggggacccat gcaaccatga aaattcaagg gcgcactgtt ggaggtcaga 3361 tgggcatgct tctgacagga tccaacgcca aaagcatgga tctaggcacc acaccaggtg 3421 attgcggctg tccctacatc tacaagagag gaaatgacta tgtggtcatt ggagtccaca 3481 cggctgccgc tcgtggggga aacactgtca tatgtgccac ccaggggggt gagggggaag 3541 ctacacttga aggtggtgac agtaagggaa catactgtgg tgcaccaatc ctaggtccag 3601 ggagtgcccc aaaacttagc accaaaacca aattctggag atcatccaca gcaccactcc 3661 cacctggcac ctatgaacca gcctaccttg gtggcaagga ccccagagtc aagggtggcc 3721 cctcgttgca gcaagtcatg agggaccagc tgaaaccatt tacagagcct aggggtaagc 3781 caccaaagcc aagtgtgtta gaagctgcca agaaaaccat catcaatgtc cttgaacaaa 3841 caattgaccc acctgagaag tggtcgttcg cacaagcttg cgcgtccctt gacaagacca 3901 cttctagcgg ccatccgcac cacatgcgga aaaacgactg ctggaacggg gaatccttca 3961 caggcaagct ggcagaccag gcttccaagg ccaacctgat gtttgaagaa gggaagaaca 4021 tgaccccagt ctacacaggt gcacttaagg atgaattagt caaaactgac aaaatttatg 4081 gtaagatcaa gaagaggctt ctctggggct cggatttagc aaccatgatc cggtgtgctc 4141 gagcattcgg aggcctaatg gatgaactca aagcacactg tgtcacactt cctatcagag 4201 ttggtatgaa tatgaatgag gatggcccca tcatcttcga gaagcattcc aggtacagat 4261 accactatga tgctgattac tctcggtggg attcaacaca acagagagcc gtgctggcag 4321 ctgctctaga aatcatggtt aaattctcct cagaaccaca tttggctcag gtagtagcag 4381 aagaccttct ctctcctagc gtggtggatg tgggtgactt cacaatatca atcaacgagg 4441 gtcttccctc tggggtgccc tgcacctccc aatggaactc catcgcccac tggcttctca 4501 ctctctgcgc actctctgaa gttacaaatt tgtccccaga catcatacag gctaattctc 4561 tcttctcctt ctatggtgat gatgaaattg ttagtacaga cataaaatta gacccagaga 4621 agttgacagc aaagcttaag gaatacgggt tgaaaccaac ccgccctgat aaaactgaag 4681 gacctcttgt tatttctgaa gacttagatg gtttgacttt cctgcggaga actgtgaccc 4741 gcgacccagc tggttggttt ggaaaactgg agcagagctc aatactcagg caaatgtact 4801 ggactagggg ccccaaccat gaagacccat ctgaatcaat gattccacac tctcaaagac 4861 ccatacaatt gatgtcctta ctgggagagg ccgcactcca cggcccaaca ttctacggta 4921 aaatcagcaa attagtcatt gcagagctaa aagaaggtgg tatggatttt tacgtgccca 4981 ggcaagagcc aatgttcaga tggatgagat tctcagacct gagcacgtgg gagggcgatc 5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga atgacgccaa cccatctgat 5101 gggtccgcag ccaacctcgt cccagaggtc aacaatgagg ttatggcttt ggagcccgtt 5161 gtcggtgccg ctattgcggc gcctgtagcg ggccaacaaa atgtaattga cccctggatt 5221 agaaataatt ttgtacaagc ccctggtgga gagttcacag tatcccctag aaacgctcca 5281 ggtgaaatac tatggagcgc gcccttaggc cctgatctga atccctacct atctcatttg 5341 gccagaatgt ataatggtta tgcaggtggt tttgaagtgc aggtgatcct cgcggggaac 5401 gcgttcaccg ccggaaaaat tatatttgca gcagtcccac caaattttcc aactgaaggc 5461 ttgagtccca gccaggtcac tatgttcccc cacataatag tggatgttag gcaattggaa 5521 cctgtgttga tccccttacc tgatgttagg aataacttct atcactataa tcagtcaaat 5581 gattctacca ttaaattgat agcaatgctg tatacaccac ttagggctaa taatgctggg 5641 gaagatgtct tcacagtctc ttgtcgagtc ctcacgaggc catcccctga ttttgatttt 5701 atatttttgg tgccacctac agttgagtca agaactaaac catttactgt cccaatctta 5761 actgttgaag aaatgaccaa ttcaagattc cccattcctt tggaaaaatt gttcacgggt 5821 cccagcagtg cctttgttgt tcaaccacaa aatggcagat gcacgactga tggcgtgctc 5881 ttaggtacca cccaactgtc tcctgtcaac atctgcacct tcagagggga tgtcacccac 5941 attgcaggtt ctcgtaatta cacaatgaat ttggcttctc taaattggaa caattatgac 6001 ccaacagaag aaattccagc ccctctagga actccagatt tcgtgggaaa gatccaaggt 6061 gtgctcactc aaaccacaaa gggagatggc tcgacccgtg gtcataaagc tacagtctac 6121 actgggagtg ccccctttac tccaaagctg ggcagtgttc aattcagtac tgatacagaa 6181 aatgattttg aaactcacca aaatacaaaa ttcaccccag tcggtgtcat ccaggatggt 6241 ggcaccaccc accgaaatga accccaacaa tgggtgctcc caagttattc aggtagaaat 6301 gtccataatg tacacctagc ccctgctgta gcccccactt ttccgggtga acaacttctt 6361 ttcttcaggt ccactatgcc cggatgcagc gggtatccca acatggattt ggattgccta 6421 ctcccccagg agtgggtgca gcacttctac caagaggcag ctccagcaca atctgatgtg 6481 gctctattga gatttgtgaa tccagacacg ggtagggtcc tgtttgagtg caaacttcat 6541 aaatcaggct atgtcacagt ggctcacacc ggccagcatg atttggtcat cccccccaat 6601 ggctatttta ggtttgattc ctgggttaat caattctaca cacttgcccc catgggaaat 6661 ggaacggggc gtagacgtgc tttgtaatgg ctggagcttt ctttgctgga ttggcatctg 6721 atgtccttag ctctggactt ggttccctaa tcaatgctgg ggctggggct atcaaccaaa 6781 agattgattt tgaaaataac agaaaattgc agcaagcttc cttccagttt agcagtgatc 6841 tacaacaggc ttcctttcaa catgataaag agatgctcca agcacaaatt gaggccacta 6901 aaaagttgca acaggaaatg atgaaagtca aacaggcaat gctcttagaa ggtggattct 6961 ctgaaacaga tgcagcccgt ggggcaatca acgcccccat gacaaaggct ttggactgga 7021 gcggaacaag gtactgggcc cctgatgcta ggactacaac atacaatgca ggccgctttt 7081 ccacctctca accttcgggg gcactgccag gaagaatcaa tcccaggact cctacccccg 7141 ctcggggctc ccccagcaca tcttctaatg cttctactgc tacttctata tattcaaatc 7201 aaactgtttc aacgagactt ggttctacag ctggttctgg caccaatgtc tcgagtctcc 7261 cgtcaactgc aaggactagg agttgggttg aggatcaaaa cagaaatttg tcacctttca 7321 tgaggggggc tcacaacata tcgtttgtca ccccaccatc tagcagatcc tctagccaag 7381 gcacagtctc aaccgtgcct aaagaagttt tggactcctg gactggcgct ttcaacacgc 7441 gcaggcagcc tctcttcgct cacattcgta ggcgagggga gtcacgggtg taatgtgaaa 7501 agacaaaatt gatta //