Typing tool
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Typing tool
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Complete norovirus genomes
| JX445158 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 1..5084
ORF2: 5065..6687
ORF3: 6687..7493
LOCUS JX445158 7515 bp RNA linear VRL 10-OCT-2012
DEFINITION Norovirus Hu/GII.4/AlbertaEI603/2006/CA non-structural polyprotein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION JX445158
VERSION JX445158.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/AlbertaEI603/2006/CA
ORGANISM Norovirus Hu/GII.4/AlbertaEI603/2006/CA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7515)
AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and
Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health
(ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada
FEATURES Location/Qualifiers
source 1..7515
/organism="Norovirus Hu/GII.4/AlbertaEI603/2006/CA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/AlbertaEI603/2006/CA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1238284"
/geo_loc_name="Canada"
/collection_date="Dec-2006"
/note="genotype: GII.4"
CDS <1..5084
/codon_start=3
/product="non-structural polyprotein"
/protein_id="AFU55703.1"
/translation="DATAAAAANSNNDTAKSSSDKMFSSMAVTFKRALGARPKQPPPR
EIPQRPPRPPTPELVKKIPPPPPNGEDEVVVSYSAKDGVSGLPELSTVMQPEETNTAF
SVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVEL
TPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM
IQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLRPLNI
INILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPEDLVVELV
PVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN
ELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD
IVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIAA
SLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC
DRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP
GQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHE
RLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKTMPELKQA
LKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLRCARIRY
YVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEGATNKDGCPKPKDD
EEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIR
KRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITS
THVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLL
IKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI
YKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPILGPGSAPK
LSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPK
PSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFT
GKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRC
ARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRA
VLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKP
TRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPS
ESMIPHSQRPIQLMSLLGEAALHGPTFYGKISKLVIAELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5065..6687
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AFU55704.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6687..7493
/codon_start=1
/product="minor structural protein"
/protein_id="AFU55705.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSDLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTSQPSGALPGRINPRTPTPARGSPSTSS
NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
3'UTR 7494..>7515
ORIGIN
1 acgacgctac cgctgccgct gctgctaaca gcaacaacga caccgcaaaa tcttcaagtg
61 acaaaatgtt ttctagcatg gctgtcactt ttaaacgagc cctcggggcg cggcctaaac
121 agcccccccc gagggaaata ccacaaagac ccccacgacc gcctactcca gaactggtca
181 aaaagatccc tcctcccccg cccaacggag aggatgaagt agtggtttct tatagtgcca
241 aagatggcgt ttccggttta cctgagcttt ccaccgtcat gcaaccggaa gaaaccaata
301 cggccttcag tgtccctcca ctcaatcaga gggagaatag ggatgctaag gaaccactga
361 ctggaacaat tctggaaatg tgggatggag aaatctacca ttatggcctg tatgttgagc
421 gaggtcttgt gctgggtgtg cacaaaccac cagctgccat tagcctcgcc aaggtcgaac
481 taacaccact ctccttgttc tggagacctg tgtacactcc tcagtacctc atctctccag
541 acactctcaa gaaattacac ggagaaacat ttccctacac agcctttgac aacaactgct
601 atgccttttg ttgctgggtc ctggatctaa acgactcgtg gctgagtagg agaatgatcc
661 agagaacaac tggcttcttc agaccctacc aagattggaa taggaaaccc ctccccacca
721 tggatgattc caaattaaag aaggtagcta acatattcct gtgcaccctg tcttcgctat
781 tcaccaggcc cataaaagac ataataggga agttaaggcc tctcaacatc atcaacatcc
841 tggcttcatg tgattggact ttcgcaggca tagtggagtc cttgatactc ttggcggagc
901 tctttggagt cttctggaca cccccagatg tgtctgcgat gattgccccc ttactcggtg
961 acttcgagtt acaaggacct gaggaccttg tagtggagct cgtccctgta gtaatggggg
1021 gaattggttt ggtgctagga ttcaccaaag agaagattgg aaaaatgtta tcatctgctg
1081 catccacctt gagagcttgt aaagatcttg gtgcatatgg gctagagatc ctaaagttag
1141 tcatgaagtg gttcttcccg aagaaagagg aagcaaatga actggctatg gtgagatcca
1201 tcgaggatgc agtactggac cttgaggcaa ttgaaaataa ccatatgacc accttgctca
1261 aagacaaaga cagcctggca acctatatga gaacccttga cctcgaggaa gagaaagcca
1321 gaaaactctc aaccaagtct gcttcacctg acatcgtggg cacaatcaac gcccttctgg
1381 cgagaatcgc cgctgcacgc tccctggtgc accgagcgaa ggaggagctt tccagcagac
1441 caagacctgt agtcttgatg atatcaggca gaccaggaat agggaagacc caccttgcta
1501 gggaagtggc taagagaatc gcagcctccc tcacaggaga ccagcgtgta ggcctcatcc
1561 cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga gagggtcgtc ctatgggacg
1621 actatggaat gagcaatccc atccacgacg ccctcaggct gcaagaactc gctgacactt
1681 gccccctcac tctaaattgt gacaggattg agaataaagg aaaggtcttt gacagcgatg
1741 tcatcattat cactactaat ctggccaacc cagcaccact ggactatgtc aactttgaag
1801 cgtgctcgag gcgcatcgat ttcctcgtgt atgcagaagc ccccgaagtc gaaaaggcga
1861 agcgtgactt cccgggccaa cctgacatgt ggaaaaacgc ttttagttct gatttctcac
1921 acataaaatt ggcactggct ccacaaggtg gctttgataa gaacgggaac accccacacg
1981 ggaagggcgt catgaagact ctcaccactg gctccctcat tgcccgggca tcagggctgc
2041 tccatgagag attggatgag tttgaactac agggcccagc tcttaccacc ttcaactttg
2101 accgcaacaa agtgcttgcc ttcaggcagc ttgctgctga aaacaaatac gggttgatgg
2161 acacaatgaa agttgggagg cagctcaagg atgtcaaaac catgccagaa cttaaacaag
2221 cactcaagaa tatctcaatc aagaagtgcc agattgtgta tagtggttgc acctacacac
2281 ttgagtctga tggcaagggc aatgtgaaag ttgacagagt tcagagcacc tccgttcaga
2341 ccaacaatga gctggctggc gccctgcacc atctaaggtg cgccagaatc aggtactatg
2401 tcaagtgtgt tcaggaggcc ctgtattcta tcatccagat tgctggggct gcatttgtca
2461 ccacgcgcat catcaagcgt gtgaacattc aagacttatg gtccaagcca caagtggaaa
2521 acacagaggg ggctaccaac aaggacgggt gcccaaaacc caaagatgat gaggagttcg
2581 tcatttcatc tgacgacatt aaaactgagg gtaagaaagg gaagaacaag actggccgtg
2641 gcaagaagca cacagccttc tcaagtaaag gtctcagtga tgaagagtat gatgagtaca
2701 agagaattag agaggaaagg aatggcaagt actccataga agagtacctt caggacaggg
2761 acaaatacta tgaggaggtg gccattgcca gggcgaccga ggaagacttc tgtgaagagg
2821 aggaggccaa gatccggcaa aggatcttca gaccaacaag gaaacaacgc aaggaagaaa
2881 gagcttctct cggtttagtc acaggttctg aaattaggaa aagaaaccca gaagacttca
2941 aacccaaggg gaaactatgg gctgacgatg acagaagtgt ggactacaat gaaaagctca
3001 gttttgaggc cccaccaagc atctggtcaa ggatagtcaa ctttggctca ggttggggct
3061 tctgggtctc ccccagcctg ttcataacat caacccacgt cataccccag ggcgcaaagg
3121 agttctttgg agtccccatc aaacaaattc aggtacacaa gtcaggcgaa ttctgtcgct
3181 tgagattccc aaaaccaatc aggactgatg tgactggcat gatcttggaa gaaggtgcgc
3241 ccgaaggcac cgtggtcaca ctactcatca aaaggtctac tggagaactc atgcccctag
3301 cagctagaat ggggacccat gcaaccatga aaattcaagg gcgcactgtt ggaggtcaga
3361 tgggcatgct tctgacagga tccaacgcca aaagcatgga tctaggcacc acaccaggtg
3421 attgcggctg tccctacatc tacaagagag gaaatgacta tgtggtcatt ggagtccaca
3481 cggctgccgc tcgtggggga aacactgtca tatgtgccac ccaggggggt gagggggaag
3541 ctacacttga aggtggtgac agtaagggaa catactgtgg tgcaccaatc ctaggtccag
3601 ggagtgcccc aaaacttagc accaaaacca aattctggag atcatccaca gcaccactcc
3661 cacctggcac ctatgaacca gcctaccttg gtggcaagga ccccagagtc aagggtggcc
3721 cctcgttgca gcaagtcatg agggaccagc tgaaaccatt tacagagcct aggggtaagc
3781 caccaaagcc aagtgtgtta gaagctgcca agaaaaccat catcaatgtc cttgaacaaa
3841 caattgaccc acctgagaag tggtcgttcg cacaagcttg cgcgtccctt gacaagacca
3901 cttctagcgg ccatccgcac cacatgcgga aaaacgactg ctggaacggg gaatccttca
3961 caggcaagct ggcagaccag gcttccaagg ccaacctgat gtttgaagaa gggaagaaca
4021 tgaccccagt ctacacaggt gcacttaagg atgaattagt caaaactgac aaaatttatg
4081 gtaagatcaa gaagaggctt ctctggggct cggatttagc aaccatgatc cggtgtgctc
4141 gagcattcgg aggcctaatg gatgaactca aagcacactg tgtcacactt cctatcagag
4201 ttggtatgaa tatgaatgag gatggcccca tcatcttcga gaagcattcc aggtacagat
4261 accactatga tgctgattac tctcggtggg attcaacaca acagagagcc gtgctggcag
4321 ctgctctaga aatcatggtt aaattctcct cagaaccaca tttggctcag gtagtagcag
4381 aagaccttct ctctcctagc gtggtggatg tgggtgactt cacaatatca atcaacgagg
4441 gtcttccctc tggggtgccc tgcacctccc aatggaactc catcgcccac tggcttctca
4501 ctctctgcgc actctctgaa gttacaaatt tgtccccaga catcatacag gctaattctc
4561 tcttctcctt ctatggtgat gatgaaattg ttagtacaga cataaaatta gacccagaga
4621 agttgacagc aaagcttaag gaatacgggt tgaaaccaac ccgccctgat aaaactgaag
4681 gacctcttgt tatttctgaa gacttagatg gtttgacttt cctgcggaga actgtgaccc
4741 gcgacccagc tggttggttt ggaaaactgg agcagagctc aatactcagg caaatgtact
4801 ggactagggg ccccaaccat gaagacccat ctgaatcaat gattccacac tctcaaagac
4861 ccatacaatt gatgtcctta ctgggagagg ccgcactcca cggcccaaca ttctacggta
4921 aaatcagcaa attagtcatt gcagagctaa aagaaggtgg tatggatttt tacgtgccca
4981 ggcaagagcc aatgttcaga tggatgagat tctcagacct gagcacgtgg gagggcgatc
5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga atgacgccaa cccatctgat
5101 gggtccgcag ccaacctcgt cccagaggtc aacaatgagg ttatggcttt ggagcccgtt
5161 gtcggtgccg ctattgcggc gcctgtagcg ggccaacaaa atgtaattga cccctggatt
5221 agaaataatt ttgtacaagc ccctggtgga gagttcacag tatcccctag aaacgctcca
5281 ggtgaaatac tatggagcgc gcccttaggc cctgatctga atccctacct atctcatttg
5341 gccagaatgt ataatggtta tgcaggtggt tttgaagtgc aggtgatcct cgcggggaac
5401 gcgttcaccg ccggaaaaat tatatttgca gcagtcccac caaattttcc aactgaaggc
5461 ttgagtccca gccaggtcac tatgttcccc cacataatag tggatgttag gcaattggaa
5521 cctgtgttga tccccttacc tgatgttagg aataacttct atcactataa tcagtcaaat
5581 gattctacca ttaaattgat agcaatgctg tatacaccac ttagggctaa taatgctggg
5641 gaagatgtct tcacagtctc ttgtcgagtc ctcacgaggc catcccctga ttttgatttt
5701 atatttttgg tgccacctac agttgagtca agaactaaac catttactgt cccaatctta
5761 actgttgaag aaatgaccaa ttcaagattc cccattcctt tggaaaaatt gttcacgggt
5821 cccagcagtg cctttgttgt tcaaccacaa aatggcagat gcacgactga tggcgtgctc
5881 ttaggtacca cccaactgtc tcctgtcaac atctgcacct tcagagggga tgtcacccac
5941 attgcaggtt ctcgtaatta cacaatgaat ttggcttctc taaattggaa caattatgac
6001 ccaacagaag aaattccagc ccctctagga actccagatt tcgtgggaaa gatccaaggt
6061 gtgctcactc aaaccacaaa gggagatggc tcgacccgtg gtcataaagc tacagtctac
6121 actgggagtg ccccctttac tccaaagctg ggcagtgttc aattcagtac tgatacagaa
6181 aatgattttg aaactcacca aaatacaaaa ttcaccccag tcggtgtcat ccaggatggt
6241 ggcaccaccc accgaaatga accccaacaa tgggtgctcc caagttattc aggtagaaat
6301 gtccataatg tacacctagc ccctgctgta gcccccactt ttccgggtga acaacttctt
6361 ttcttcaggt ccactatgcc cggatgcagc gggtatccca acatggattt ggattgccta
6421 ctcccccagg agtgggtgca gcacttctac caagaggcag ctccagcaca atctgatgtg
6481 gctctattga gatttgtgaa tccagacacg ggtagggtcc tgtttgagtg caaacttcat
6541 aaatcaggct atgtcacagt ggctcacacc ggccagcatg atttggtcat cccccccaat
6601 ggctatttta ggtttgattc ctgggttaat caattctaca cacttgcccc catgggaaat
6661 ggaacggggc gtagacgtgc tttgtaatgg ctggagcttt ctttgctgga ttggcatctg
6721 atgtccttag ctctggactt ggttccctaa tcaatgctgg ggctggggct atcaaccaaa
6781 agattgattt tgaaaataac agaaaattgc agcaagcttc cttccagttt agcagtgatc
6841 tacaacaggc ttcctttcaa catgataaag agatgctcca agcacaaatt gaggccacta
6901 aaaagttgca acaggaaatg atgaaagtca aacaggcaat gctcttagaa ggtggattct
6961 ctgaaacaga tgcagcccgt ggggcaatca acgcccccat gacaaaggct ttggactgga
7021 gcggaacaag gtactgggcc cctgatgcta ggactacaac atacaatgca ggccgctttt
7081 ccacctctca accttcgggg gcactgccag gaagaatcaa tcccaggact cctacccccg
7141 ctcggggctc ccccagcaca tcttctaatg cttctactgc tacttctata tattcaaatc
7201 aaactgtttc aacgagactt ggttctacag ctggttctgg caccaatgtc tcgagtctcc
7261 cgtcaactgc aaggactagg agttgggttg aggatcaaaa cagaaatttg tcacctttca
7321 tgaggggggc tcacaacata tcgtttgtca ccccaccatc tagcagatcc tctagccaag
7381 gcacagtctc aaccgtgcct aaagaagttt tggactcctg gactggcgct ttcaacacgc
7441 gcaggcagcc tctcttcgct cacattcgta ggcgagggga gtcacgggtg taatgtgaaa
7501 agacaaaatt gatta
//