Typing tool
|
Complete norovirus genomes
JX445157 | GII.4 Yerseke | ||
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GII.P4 Yerseke |
ORF1: 1..5084 ORF2: 5065..6687 ORF3: 6687..7493LOCUS JX445157 7515 bp RNA linear VRL 10-OCT-2012 DEFINITION Norovirus Hu/GII.4/AlbertaEI513/2006/CA non-structural polyprotein gene, partial cds; and major capsid protein and minor structural protein genes, complete cds. ACCESSION JX445157 VERSION JX445157.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/AlbertaEI513/2006/CA ORGANISM Norovirus Hu/GII.4/AlbertaEI513/2006/CA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7515) AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and Pang,X.L. TITLE Direct Submission JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health (ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada FEATURES Location/Qualifiers source 1..7515 /organism="Norovirus Hu/GII.4/AlbertaEI513/2006/CA" /mol_type="genomic RNA" /strain="Hu/GII.4/AlbertaEI513/2006/CA" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1238283" /country="Canada" /collection_date="Dec-2006" /note="genotype: GII.4" CDS <1..5084 /codon_start=3 /product="non-structural polyprotein" /protein_id="AFU55700.1" /translation="DASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQPPPR EIPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPEESNTAF SVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLARVEL APLSLYWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM IQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKLRPLNI LNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELV PVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN ELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD IVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREMAKRIAA SLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC DRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP GQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGRGVMKTLTTGSLIARASGLLHE RLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTMPELKQA LKNISIKKCQIVYSGCTYILESDGKGNVKVDRVQSASVQTNNELTGALHHLRCARIRY YVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGCPKPKDD EEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYEEYKRIREERNGKYSIEE YLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIR KRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITS THVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLL IKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI YKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPK LSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPK PSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFT GKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRC ARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRA VLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSI AHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKP TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGSNHEDPS ETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM RFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5065..6687 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AFU55701.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNSYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGTQEYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTRRDGSTRGHKATVSTGSVHFTPKLGRIQFSTDTSNDFETGQNTRFTPVGVVQDG STTHQNEPQQWVLPNYSGRDSHNVHLAPAVAPSFPGEQLLFFRSTMPGCSGYPNMNLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6687..7493 /codon_start=1 /product="minor structural protein" /protein_id="AFU55702.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVRQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNLRAAVPAWGSSSIPS NSSTATSVYSNQTASTRLGSTAGSGASVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" 3'UTR 7494..>7515 ORIGIN 1 acgacgcttc cgctgccgct gttgctaaca gcaacaacga caccgcaaaa tcttcaagtg 61 acggagtgct ttctagcatg gctgtcactt ttaaacgagc cctcggggcg cggcctaaac 121 agcctccccc gagggaaata ccacaaagac ccccacgacc acctactcca gaactggtta 181 aaaatattcc ccctcccccg cccaacggag aggatgaaat agtggtttct tatagtgtca 241 aagatggtgt ttccggtttg cctgaccttt ccaccgtcag gcaaccggaa gagtctaaca 301 cggcctttag tgtccctcca ctcaatcaga gggagaatag agatgctaag gagccactga 361 ctgggacaat tctggaaatg tgggatggag aaatctacca ttatggcctg tatgtggagc 421 gaggtcttgt actaggtgtg cacaaaccac cagctgccat tagcctcgct agggtcgagc 481 tagcaccact ctccttgtac tggagacctg tgtacactcc ccagtacctc atctctccag 541 acactctcaa gaaattacac ggagaaacgt tcccctacac agcctttgac aacaattgtt 601 atgccttttg ttgctgggtc ctggacctaa atgactcgtg gctgagcagg agaatgatcc 661 agagaacaac tggtttcttc aggccctacc aagattggaa taggaaaccc ctccccacta 721 tggatgactc caaattaaag aaggtagcta acatattcct gtgtgctctg tcttcgctat 781 tcaccaggcc cataaaagat ataataggga agctaaggcc tcttaacatc ctcaacatct 841 tagcctcatg tgattggact tttgcaggca tagtggagtc cctgatactc ttggcagaac 901 tctttggagt tttctggaca cccccagatg tgtctgcgat gattgccccc ttactcggtg 961 actacgagct acaaggacct gaggaccttg cagtggagct cgtccccgta gtgatggggg 1021 gaattggttt ggtgctagga ttcaccaaag agaagattgg gaaaatgttg tcatctgctg 1081 catccacctt gagggcttgt aaagaccttg gtgcatatgg gctagagatc ctaaagttgg 1141 tcatgaagtg gttcttcccg aagaaggagg aagcaaatga attggctata gtgagatcta 1201 tcgaggatgc agtcctggat ctcgaggcaa ttgaaaacaa ccatatgacc accttgctca 1261 aagacaaaga cagtctggca acctatatga gaacccttga ccttgaggag gagaaagcca 1321 ggaaactctc aaccaagtct gcctcacctg acatcgtggg cacaatcaac gcccttctgg 1381 cgaggatcgc tgctgcacgc tctctggtgc atcgagcgaa ggaggaactt tccagcagac 1441 caagacctgt agtgttgatg atatcaggca gaccaggaat agggaagacc cacctcgcta 1501 gggaaatggc taagagaatc gcagcctccc tcacaggaga ccagcgtgta ggcctcgtcc 1561 cacgcaatgg cgtcgaccac tgggatgcgt acaaggggga gagggtcgtc ttatgggacg 1621 attatgggat gagcaatccc attcacgatg ccctcaggtt gcaagaactc gctgacactt 1681 gtcccctcac tctaaactgt gacaggattg agaataaagg aaaggtcttt gacagcgatg 1741 tcatcattat caccactaat ctggccaacc cagcaccact ggactatgtc aactttgaag 1801 catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc ccctgaagtc gaaaaggcaa 1861 agcgtgactt cccaggccaa cctgacatgt ggaagaacgc cttcagttct gatttctcac 1921 acataaaact aacattggcc ccacagggtg gcttcgacaa gaacgggaac accccacacg 1981 gaaggggcgt catgaagact ctcaccactg gctcccttat tgcccgggca tcagggctac 2041 tccatgagag gttagatgaa tttgaactac agggcccaac tctcaccacc ttcaatttcg 2101 atcgcaataa agtgcttgcc tttagacaac ttgctgctga aaacaaatat gggttgatgg 2161 acacaatgag agttgggaga cagctcaagg atgtcagaac catgccagaa ctcaaacaag 2221 cactcaagaa tatctcaatc aagaagtgcc agatagtgta tagtggttgc acctacatac 2281 ttgagtctga tggcaagggc aatgtgaaag ttgacagagt tcagagcgcc tccgtgcaga 2341 ccaacaatga gctgactggt gccctgcacc atttgaggtg cgccaggatt agatactatg 2401 tcaagtgtgt ccaggaggcc ctgtattcca tcatccaaat tgctggggct gcgtttgtca 2461 ccacgcgcat cgtcaagcgc atgaacatac aagacctatg gtccaagcca caagtggaaa 2521 acacagagga gaccaccagc aaggacgggt gtccaaaacc caaagatgat gaggagtttg 2581 tcatttcatc tgacgacatc aaaactgagg gtaagaaagg gaagaacaag actggccgcg 2641 gcaagaagca cacagccttt tcaagcaaag gtctcagtga tgaagagtac gaagagtaca 2701 agaggattag agaagaaagg aatggcaagt actccataga agaatacctt caggacaggg 2761 acaaatacta tgaggaggtg gccattgcca gggcgactga ggaagacttc tgtgaagagg 2821 aggaggccaa gatccggcaa aggatcttca ggccaacaag gaaacaacgc aaggaggaaa 2881 gagcttctct cggtctggtc acaggttctg aaattaggaa aagaaaccca gatgatttca 2941 aacccaaggg gaaactgtgg gctgacgatg acagaagtgt ggactataat gagaaactca 3001 gctttgaggc cccaccaagt atctggtcga ggatagtcaa ctttggctca ggttggggat 3061 tctgggtctc ccccagtctg ttcataacat cgacccatgt cataccccag ggcgcaaagg 3121 agttctttgg agtccccatc aaacaaattc aggtacacaa gtcaggcgag ttctgtcgct 3181 tgagattccc aaaaccaatc aggactgatg tgacaggcat gatcttagaa gaaggcgcac 3241 ccgagggcac cgtggtcaca ctactcatca aaaggtccac tggggaactc atgcccctag 3301 cagctaggat ggggacccat gcaaccatga agatccaagg gcgcaccgtt ggaggccaaa 3361 tgggcatgct tctgacagga tccaacgcca aaagcatgga tctgggtact acaccaggtg 3421 attgtggctg tccctacatc tacaagagag gaaatgacta tgtggtcatt ggagtccaca 3481 cggctgccgc tcgtggggga aacactgtca tatgtgccac ccaggggagt gagggagagg 3541 ctacacttga aggtggtgac aacaagggga catactgtgg tgcaccaatc ctaggcccag 3601 ggagtgcccc aaaacttagt accaagacca aattctggag atcgtccacg gcatcactcc 3661 cacctggcac ctatgaacca gcctatcttg gtggcaagga ccctagagtc aagggtggcc 3721 cttcactgca gcaagtcatg agggaacagt tgaagccatt cacagagccc aggggcaagc 3781 caccaaagcc aagtgtgtta gaagctgcca agaagaccat catcaatgtc cttgagcaaa 3841 caattgatcc acctgagaaa tggtcattcg cacaagcttg cgcgtccctt gacaagacca 3901 cttccagtgg ccatccgcac cacatgcgga aaaacgactg ctggaacggg gagtccttca 3961 caggcaagct agcagaccag gcttccaagg ccaatctgat gtttgaagaa gggaagaaca 4021 tgaccccagt ctacacagct gcgctcaagg atgaattagt taaaactgac aaaatttatg 4081 gtaagatcaa gaagaggctt ctctggggct cggacttggc gaccatgatc cggtgcgctc 4141 gagcattcgg aggcctaatg gatgaactca aagcacactg tgtcacactt cccattagag 4201 ttggtatgaa tatgaatgag gatggcccca tcatcttcga gaggcattcc aggtacacat 4261 atcactatga tgctgattac tctcggtggg attcaacaca acagagagcc gtgttggcag 4321 cagctctaga aatcatggtt aaattctccc cagaaccaca tttggctcag gtagtcgcgg 4381 aagaccttct ttctcctagc gtggtggacg tgggcgactt cacaatatca atcaacgagg 4441 gtcttccctc tggggtgccc tgcacctccc aatggaactc catcgcccac tggcttctca 4501 ctctctgtgc gctctctgaa gttacaaact tgtcccctga taccatacag gctaattccc 4561 tcttctcttt ttatggtgat gatgaaattg ttagcacaga tataaaattg gacccagaga 4621 aattgacagc aaagctcagg gaatatgggt taaaaccaac ccgccctgac aaaactgaag 4681 gaccccttgt catctctgaa gacttgaatg gcctgacttt cctgcggaga actgtgaccc 4741 gcgacccagc tggttggttt ggaaaactgg agcagagttc aatactcagg caaatgtact 4801 ggactagggg ctccaaccat gaagacccat ctgaaacaat gattccacac tcccaaagac 4861 ccatacaatt gatgtcccta ctgggggagg ccgctcttca cggcccagca ttctacagca 4921 aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg catggatttt tacgtgccca 4981 gacaagagcc aatgttcaga tggatgagat tctcagatct gagcacgtgg gagggcgatc 5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa cccatctgat 5101 gggtccacag ccaacctcgt cccagaggtc aacaatgagg ttatggcttt ggagcccgtt 5161 gttggtgccg ctattgcggc acctgtagcg ggccaacaaa atgtaattga cccctggatt 5221 agaaataatt ttgtacaagc ccctggtgga gagtttacag tatcccctag aaacgctcca 5281 ggtgaaatac tatggagcgc gcccttgggc cctgatttga atccctacct ttcccatttg 5341 gccagaatgt acaatagtta tgcaggtggt tttgaagtgc aggtaatcct cgcggggaac 5401 gcgttcaccg ccggaaaaat catatttgca gcagtcccac caaatttccc aactgaaggc 5461 ttgagcccca gccaggtcac tatgttcccc catataatag tagatgttag gcaactggaa 5521 cctgtgttga tccctttacc cgatgttagg aataatttct atcactataa ccaatcaaat 5581 gaccccacca tcaaattgat agcaatgttg tatacaccac ttagggctaa taatgctggg 5641 gacgatgtct tcacagtttc ttgtcgggtt ctcacgagac catcccccga ttttgatttc 5701 atatttttag tgccacccac agttgagtca agaactaaac cattctctgt cccaatttta 5761 actgttgagg agatgaccaa ttcaagattc cccattcctt tggaaaagtt gttcacgggt 5821 cccagcagtg cctttgttgt tcaaccacaa aatggcaggt gcacgactga tggcgtgctc 5881 ttaggtacta cccaactgtc tcctgtcaac atctgcacct tcagagggga tgtcacccac 5941 attgctggta ctcaagaata cacaatgaat ctggcctccc aaaactggaa caattatgac 6001 ccaacagaag aaatcccagc ccctctgggg actccagatt tcgtgggtaa gatccaaggc 6061 gtgctcaccc aaaccacaag gagggatggc tcgacccgcg gtcacaaagc cacagtgagc 6121 actggaagtg tccacttcac cccaaagctg ggcagaattc aattctccac tgatacaagc 6181 aatgattttg aaactggcca aaacacgaga ttcaccccag tcggtgttgt ccaggatggt 6241 agtaccaccc accaaaatga accccaacaa tgggtactcc caaattattc aggtagagat 6301 agtcacaatg tgcacctagc ccctgccgtg gccccctctt ttccgggtga gcaacttctt 6361 ttcttcaggt ccactatgcc cggatgcagc gggtatccca acatgaattt ggattgtcta 6421 ctcccccagg agtgggtgca gcacttctac caagaggcag ccccagcaca atctgatgtg 6481 gctctgctaa gatttgtgaa tccagacaca ggtagggttc tgtttgagtg taagcttcat 6541 aaatcaggct atgtcacagt ggctcacact ggccaacatg atttagttat cccccccaat 6601 ggctatttta gatttgattc ctgggtcaac cagttctaca cacttgcccc catgggaaat 6661 ggaacggggc gtagacgtgc attataatgg ctggagcttt ctttgctgga ttggcatctg 6721 atgtccttgg ctctggactt ggttccctaa tcaatgctgg ggctggggcc atcaaccaaa 6781 aagttgaatt tgagaataac agaaaattgc aacaagcttc cttccaattt agcagcaacc 6841 tacaacaggc ttcctttcaa catgataaag agatgctcca agcacaaatt gaggccacca 6901 aaaagttgca acaagaaatg atgaaagtta gacaggcaat gctcctagag ggtgggttct 6961 ctgagacaga tgcagcccgt ggggcaatca acgcccccat gacaaaggct ttggactgga 7021 gcgggacaag gtactgggct cccgatgcta ggactacaac atacaatgca ggccgctttt 7081 ccacccctca accctcgggg gcactgccag gaagaactaa tcttagggct gctgtccccg 7141 cctggggctc ctccagtata ccttctaact cttctactgc tacttctgtg tattcaaatc 7201 aaactgcttc aacgagactt ggttctacag ctggttctgg tgccagtgtc tcgagcctcc 7261 cgtcaactgc aaggactagg agctgggttg aggatcaaaa taggaatttg tcacctttca 7321 tgaggggggc ccacaacata tcgtttgtca ccccaccatc tagcagatcc tctagccaag 7381 gcacagtctc aaccgtgcct aaagaagttt tggactcctg gactggcgct ttcaacacgc 7441 gcaggcagcc tctcttcgct cacattcgta agcgagggga gtcacgggtg taatgtgaaa 7501 agacaaaatt gatta //