Typing tool
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Typing tool
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Complete norovirus genomes
| JX445156 | GII.4 Yerseke | |
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| GII.P4 Yerseke |
ORF1: 1..5084
ORF2: 5065..6687
ORF3: 6687..7493
LOCUS JX445156 7515 bp RNA linear VRL 10-OCT-2012
DEFINITION Norovirus Hu/GII.4/AlbertaEI498/2006/CA non-structural polyprotein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION JX445156
VERSION JX445156.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/AlbertaEI498/2006/CA
ORGANISM Norovirus Hu/GII.4/AlbertaEI498/2006/CA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7515)
AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and
Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health
(ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada
FEATURES Location/Qualifiers
source 1..7515
/organism="Norovirus Hu/GII.4/AlbertaEI498/2006/CA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/AlbertaEI498/2006/CA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1238282"
/country="Canada"
/collection_date="Dec-2006"
/note="genotype: GII.4"
CDS <1..5084
/codon_start=3
/product="non-structural polyprotein"
/protein_id="AFU55697.1"
/translation="DASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQPPPR
EIPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTARQPEESNTAF
SVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLARVEL
APLSLYWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM
IQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKLRPLNI
LNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELV
PVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN
ELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD
IVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREMAKRIAA
SLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC
DRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP
GQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGRGVMKTLTTGSLIARASGLLHE
RLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTMPELKQA
LKNISIKKCQIVYSGCTYILESDGKGNVKVDRVQSASVQTNNELTGALHHLRCARIRY
YVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGCPKPKDD
EEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIR
KRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITS
THVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLL
IKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI
YKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPK
LSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPK
PSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFT
GKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRC
ARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRA
VLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKP
TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGSNHEDPS
ETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5065..6687
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AFU55698.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNSYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLGANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTQEYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRRDGSTRGHKATVSTGSVHFTPKLGRIQFSTDTSNDFETGQNTRFTPVGVVQDG
STTHQNEPQQWVLPNYSGRDSHNVHLAPAVAPSFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6687..7493
/codon_start=1
/product="minor structural protein"
/protein_id="AFU55699.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNLRAAVPAWGSSSIPS
NSSTATSVYSNQTASTRLGSTAGSGASVSSLPSAARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
3'UTR 7494..>7515
ORIGIN
1 acgacgcttc cgctgccgct gttgctaaca gcaacaacga caccgcaaaa tcttcaagtg
61 acggagtgct ttctagcatg gctgtcactt ttaaacgagc cctcggggcg cggcctaaac
121 agcctccccc gagggaaata ccacaaagac ccccacgacc acctactcca gaactggtta
181 aaaatattcc ccctcccccg cccaacggag aggatgaaat agtggtttct tatagtgtca
241 aagatggtgt ttccggtttg cctgaccttt ccaccgccag gcaaccggaa gagtctaaca
301 cggcctttag tgtccctcca ctcaatcaga gggagaatag agatgctaag gagccactga
361 ctgggacaat tctggaaatg tgggatggag aaatctacca ttatggcctg tatgtggagc
421 gaggtcttgt actaggtgtg cacaaaccac cagctgccat tagcctcgct agggtcgagc
481 tagcaccact ctccttgtac tggagacctg tgtacactcc ccagtacctc atctctccag
541 acactctcaa gaaattacac ggagaaacgt tcccctacac agcctttgac aacaattgtt
601 atgccttttg ttgctgggtc ctggacctaa atgactcgtg gctgagcagg agaatgatcc
661 agagaacaac tggtttcttc aggccctacc aagattggaa taggaaaccc ctccccacta
721 tggatgactc caaattaaag aaggtagcca acatattcct gtgtgctctg tcttcgctat
781 ttaccaggcc cataaaagat ataataggga agctaaggcc tcttaacatc ctcaacatct
841 tagcctcatg tgattggact tttgcaggca tagtggagtc cctgatactc ttggcagaac
901 tctttggagt tttctggaca cccccagatg tgtctgcgat gattgccccc ttactcggtg
961 actacgagct acaaggacct gaggaccttg cagtggagct cgtccccgta gtgatggggg
1021 gaattggttt ggtgctagga ttcaccaaag agaagattgg gaaaatgttg tcatctgctg
1081 catccacctt gagggcttgt aaagaccttg gtgcatatgg gctagagatc ctaaagttgg
1141 tcatgaagtg gttcttcccg aagaaggagg aagcaaatga attggctata gtgagatcta
1201 tcgaggatgc agtcctggat ctcgaggcaa ttgaaaacaa ccatatgacc accttgctca
1261 aagacaaaga cagtctggca acctatatga gaacccttga ccttgaggag gagaaagcca
1321 ggaaactctc aaccaagtct gcctcacctg acatcgtggg cacaatcaac gcccttctgg
1381 cgaggatcgc tgctgcacgc tctctggtgc atcgagcgaa ggaggaactt tccagcagac
1441 caagacctgt agtgttgatg atatcaggca gaccaggaat agggaagacc cacctcgcta
1501 gggaaatggc taagagaatc gcagcctccc tcacaggaga ccagcgtgta ggcctcgtcc
1561 cacgcaatgg cgtcgaccac tgggatgcgt acaaggggga gagggtcgtc ttatgggacg
1621 attatgggat gagcaatccc attcacgatg ccctcaggtt gcaagaactc gctgacactt
1681 gccccctcac tctaaactgt gacaggattg agaataaagg aaaggtcttt gacagcgatg
1741 tcatcattat caccactaat ctggccaacc cagcaccact ggactatgtc aactttgaag
1801 catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc ccctgaagtc gaaaaggcaa
1861 agcgtgactt cccaggccaa cctgacatgt ggaagaacgc cttcagttct gatttctcac
1921 acataaaact aacattggcc ccacagggtg gcttcgacaa gaacgggaac accccacacg
1981 gaaggggcgt catgaagact ctcaccactg gctcccttat tgcccgggca tcagggctac
2041 tccatgagag gttagatgaa tttgaactac agggcccaac tctcaccacc ttcaatttcg
2101 atcgcaataa agtgcttgcc tttagacaac ttgctgctga aaacaaatat gggttgatgg
2161 acacaatgag agttgggaga cagctcaagg atgtcagaac catgccagaa ctcaaacaag
2221 cactcaagaa tatctcaatc aagaagtgcc agatagtgta tagtggttgc acctacatac
2281 ttgagtctga tggcaagggc aatgtgaaag ttgacagagt tcagagcgcc tccgtgcaga
2341 ccaacaatga gctgactggt gccctgcacc atttgaggtg cgccaggatt agatactatg
2401 tcaagtgtgt ccaggaggcc ctgtattcca tcatccaaat tgctggggct gcgtttgtca
2461 ccacgcgcat cgtcaagcgc atgaacatac aagacctatg gtccaagcca caagtggaaa
2521 acacagagga gaccaccagc aaggacgggt gtccaaaacc caaagatgat gaggagtttg
2581 tcatttcatc tgacgacatc aaaactgagg gtaagaaagg gaagaacaag actggccgcg
2641 gcaagaagca cacagctttt tcaagcaaag gtctcagtga tgaagagtac gatgagtaca
2701 agaggattag agaagaaagg aatggcaagt actccataga agaatacctt caggacaggg
2761 acaaatacta tgaggaggtg gccattgcca gggcgactga ggaagacttc tgtgaagagg
2821 aggaggccaa gattcggcaa aggatcttca ggccaacaag gaaacaacgc aaggaggaaa
2881 gagcttctct cggtctggtc actggttctg aaattaggaa aagaaaccca gatgatttca
2941 aacccaaggg gaaactgtgg gctgacgatg acagaagtgt ggactataat gagaaactca
3001 gctttgaggc cccaccaagt atctggtcga ggatagtcaa ctttggctca ggttggggat
3061 tctgggtctc ccccagtctg ttcataacat cgacccatgt cataccccag ggcgcaaagg
3121 agttctttgg agtccccatc aaacaaattc aggtacacaa gtcaggcgag ttctgtcgct
3181 tgagattccc aaaaccaatc aggactgatg tgacaggcat gatcttagaa gaaggcgcac
3241 ccgagggcac cgtggtcaca ctactcatca aaaggtccac tggggaactc atgcccctag
3301 cagctaggat ggggacccat gcaaccatga agatccaagg gcgcaccgtt ggaggccaaa
3361 tgggcatgct tctgacagga tccaacgcca aaagcatgga tctgggtact acaccaggtg
3421 attgtggctg tccctacatc tacaagagag gaaatgacta tgtggtcatt ggagtccaca
3481 cggctgccgc tcgtggggga aacactgtca tatgtgccac ccaggggagt gagggagagg
3541 ctacacttga aggtggtgac aacaagggga catactgtgg tgcaccaatc ctaggcccag
3601 ggagtgcccc aaaacttagc accaagacca aattctggag atcgtccacg gcatcactcc
3661 cacctggcac ctatgaacca gcctatcttg gtggcaagga ccctagagtc aagggtggcc
3721 cttcactgca gcaagtcatg agggaacagt tgaagccatt cacagagccc aggggcaagc
3781 caccaaagcc aagtgtgtta gaagctgcca agaagaccat catcaatgtc cttgagcaaa
3841 caattgatcc acctgagaaa tggtcattcg cacaagcttg cgcgtccctt gacaagacca
3901 cttccagtgg ccatccgcac cacatgcgga aaaacgactg ctggaacggg gagtccttca
3961 caggcaagct agcagaccag gcttccaagg ccaatctgat gtttgaagaa gggaagaaca
4021 tgaccccagt ctacacagct gcgctcaagg atgaattagt taaaactgac aaaatttatg
4081 gtaagatcaa gaagaggctt ctctggggct cggacttggc gaccatgatc cggtgcgctc
4141 gagcattcgg aggcctaatg gatgaactca aagcacactg tgtcacactt cccattagag
4201 ttggtatgaa tatgaatgag gatggcccca tcatcttcga gaggcattcc aggtacacat
4261 atcactatga tgctgattac tctcgatggg attcaacaca acagagagcc gtgttggcag
4321 cagctctaga aatcatggtt aaattctccc cagaaccaca tttggctcag gtagtcgcgg
4381 aagaccttct ttctcctagc gtggtggacg tgggcgactt cacaatatca atcaacgagg
4441 gtcttccctc tggggtgccc tgcacctccc aatggaactc catcgcccac tggcttctca
4501 ctctctgtgc gctctctgaa gttacaaact tgtcccctga taccatacag gctaattccc
4561 tcttctcttt ttatggtgat gatgaaattg ttagcacaga tataaaattg gacccagaga
4621 aattgacagc aaagctcagg gaatatgggt taaaaccaac ccgccctgac aaaactgaag
4681 gaccccttgt catctctgaa gacttgaatg gcctgacttt cctgcggaga actgtgaccc
4741 gcgacccagc tggttggttt ggaaaactgg agcagagttc aatactcagg caaatgtact
4801 ggactagggg ctccaaccat gaagacccat ctgaaacaat gattccacac tcccaaagac
4861 ccatacaatt gatgtcccta ctgggggagg ccgctcttca cggcccagca ttctacagca
4921 aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg catggatttt tacgtgccca
4981 gacaagagcc aatgttcaga tggatgagat tctcagatct gagcacgtgg gagggcgatc
5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgccaa cccatctgat
5101 gggtccacag ccaacctcgt cccagaggtc aacaatgagg ttatggcttt ggagcccgtt
5161 gttggtgccg ctattgcggc acctgtagcg ggccaacaaa atgtaattga cccctggatt
5221 agaaataatt ttgtacaagc ccctggtgga gagtttacag tatcccctag aaacgctcca
5281 ggtgaaatac tatggagcgc gcccttgggc cctgatttga atccctacct ttcccatttg
5341 gccagaatgt acaatagtta tgcaggtggt tttgaagtgc aggtaatcct cgcggggaac
5401 gcgttcaccg ccggaaaaat catatttgca gcagtcccac caaatttccc aactgaaggc
5461 ttgagcccca gccaggtcac tatgttcccc catataatag tagatgttag gcaactggaa
5521 cctgtgttga tccctttacc cgatgttagg aataatttct atcactataa ccaatcaaat
5581 gaccccacca tcaaattgat agcaatgttg tatacaccac taggggctaa taatgctggg
5641 gacgatgtct tcacagtttc ttgtcgggtt ctcacgagac catcccccga ttttgatttc
5701 atatttttag tgccacccac agttgagtca agaactaaac cattctctgt cccaatttta
5761 actgttgagg agatgaccaa ttcaagattc cccattcctt tggaaaagtt gttcacgggt
5821 cccagcagtg cctttgttgt tcaaccacaa aatggcaggt gcacgactga tggcgtgctc
5881 ttaggtacca cccaactgtc tcctgtcaac atctgcacct tcagagggga tgtcacccac
5941 attgctggta ctcaagaata cacaatgaat ctggcctccc aaaactggaa caattatgac
6001 ccaacagaag aaatcccagc ccctctgggg actccagatt tcgtgggtaa gatccaaggc
6061 gtgctcaccc aaaccacaag gagggatggc tcgacccgcg gtcacaaagc cacagtgagc
6121 actggaagtg tccacttcac cccaaagctg ggcagaattc aattctccac tgatacaagc
6181 aatgattttg aaactggcca aaacacgaga ttcaccccag tcggtgttgt ccaggatggt
6241 agtaccaccc accaaaatga accccaacaa tgggtactcc caaattattc aggtagagat
6301 agtcacaatg tgcacctagc ccctgccgtg gccccctctt ttccgggtga gcaacttctt
6361 ttcttcaggt ccactatgcc cggatgcagc gggtatccca acatgaattt ggattgtcta
6421 ctcccccagg agtgggtgca gcacttctac caagaggcag ccccagcaca atctgatgtg
6481 gctctgctaa gatttgtgaa tccagacaca ggtagggttc tgtttgagtg taagcttcat
6541 aaatcaggct atgtcacagt ggctcacact ggtcaacatg atttagttat cccccccaat
6601 ggctatttta gatttgattc ctgggtcaac cagttctaca cacttgcccc catgggaaat
6661 ggaacggggc gtagacgtgc attataatgg ctggagcttt ctttgctgga ttggcatctg
6721 atgtccttgg ctctggactt ggttccctaa tcaatgctgg ggctggggcc atcaaccaaa
6781 aagttgaatt tgagaataac agaaaattgc aacaagcttc cttccaattt agcagcaacc
6841 tacaacaggc ttcctttcaa catgacaaag agatgctcca agcacaaatt gaggccacca
6901 aaaagttgca acaagaaatg atgaaagtta aacaggcaat gctcctagag ggtgggttct
6961 ctgagacaga tgcagcccgt ggggcaatca acgcccccat gacaaaggct ttggactgga
7021 gcgggacaag gtactgggct cccgatgcta ggactacaac atacaatgca ggccgctttt
7081 ccacccctca accctcgggg gcactgccag gaagaactaa tcttagggct gctgtccccg
7141 cctggggctc ctccagtata ccttctaact cttctactgc tacttctgtg tattcaaatc
7201 aaactgcttc aacgagactt ggttctacag ctggttctgg tgccagtgtc tcgagcctcc
7261 cgtcagctgc aaggactagg agctgggttg aggatcaaaa taggaatttg tcacctttca
7321 tgaggggggc ccacaacata tcgtttgtca ccccaccatc tagcagatcc tctagccaag
7381 gcacagtctc aaccgtgcct aaagaagttt tggactcctg gactggcgct ttcaacacgc
7441 gcaggcagcc tctcttcgct cacattcgta agcgagggga gtcacgggtg taatgtgaaa
7501 agacaaaatt gatta
//