Typing tool
|
Complete norovirus genomes
JX445154 | GII.4 Hunter | ||
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GII.P4 Hunter |
ORF1: 1..5063 ORF2: 5044..6666 ORF3: 6666..7472LOCUS JX445154 7495 bp RNA linear VRL 10-OCT-2012 DEFINITION Norovirus Hu/GII.4/AlbertaEI190/2006/CA non-structural polyprotein gene, partial cds; and major capsid protein and minor structural protein genes, complete cds. ACCESSION JX445154 VERSION JX445154.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/AlbertaEI190/2006/CA ORGANISM Norovirus Hu/GII.4/AlbertaEI190/2006/CA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7495) AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and Pang,X.L. TITLE Direct Submission JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health (ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada FEATURES Location/Qualifiers source 1..7495 /organism="Norovirus Hu/GII.4/AlbertaEI190/2006/CA" /mol_type="genomic RNA" /strain="Hu/GII.4/AlbertaEI190/2006/CA" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1238276" /country="Canada" /collection_date="May-2006" /note="genotype: GII.4" CDS <1..5063 /codon_start=3 /product="non-structural polyprotein" /protein_id="AFU55691.1" /translation="ANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQPPPREISQRPP RPPTPELVKNIPPPPPNGEDEIVISYSVKDGVSGLPDLSTVRQPEESNTAFSVPPLNQ RENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLARVELTPLSLFW RPVYTPQYLISPDALKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGF FRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKLRPLNILNILASC DWTFAGIVESSILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGI GLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAIVRS IEDAVLDLEAIENNHMTTLLKDKDSLSTYMRTLDLEEEKARKLSTKSASPDIVGTINA LLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIAASLTGDQR VGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKG KVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWK NAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEFEL QGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTMPELKQALKNISIK KCQIVHNGCTYTLESDGKGNVKVDRVQSASVQTNNELTGALHHLRCARIRYYVRCVQE ALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTGKDGRPRPKDDEEFVISS DDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDK YYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDF KPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQG AKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIKRSTGE LMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDY VVIGVHTAAARGGNTVICATQGSEGEAILEGGDNKGTYCGAPILGPGSAPKLSTKTKF WRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAA KKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQA SKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGL MDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAALE IMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTL CALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTE GPLTISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGSNHEDPFETMIPHS QRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLST WEGDRNLAPSFVNEDGVE" CDS 5044..6666 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AFU55692.1" /translation="MKMASNDATPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDG STTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD CLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKPGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" CDS 6666..7472 /codon_start=1 /product="minor structural protein" /protein_id="AFU55693.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAVN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGASSGRTNLRATVPARGSSSTPS NASTATSVYSNQTASTRLGSTAGSGTSVSSIPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" 3'UTR 7473..>7495 ORIGIN 1 ttgctaacag caacaacgac accgcaaaat cttcaagtga cggagtgctt tctagcatgg 61 ctgtcacttt taaacgagcc ctcggggcgc ggcctaagca gcctcccccg agggaaatat 121 cacaaagacc cccacgacca cctactccag aactggtcaa aaatatcccc cctcccccgc 181 ccaacggaga ggatgaaata gtgatttctt atagtgtcaa agatggtgtt tccggtttgc 241 ctgatctttc caccgtcagg caaccggaag aatctaacac ggctttcagt gtccctccac 301 tcaatcagag ggagaataga gatgctaagg agccactgac tggaacaatt ctggaaatgt 361 gggatggaga aatctaccat tatggcctgt atgtggagcg aggtcttgta ctaggtgtgc 421 acaaaccacc agctgccatt agcctcgcta gggtcgaact gacaccactc tccttgttct 481 ggagacctgt gtatactccc cagtacctca tctctccaga cgccctcaag aaattacacg 541 gagagacgtt cccctacaca gcctttgaca acaattgcta tgccttttgt tgctgggtcc 601 tggacctaaa cgactcgtgg ctgagtagga gaatgatcca gagaacaact ggcttcttca 661 ggccctacca agattggaat aggaaacccc tccccactat ggatgactcc aagttaaaga 721 aggtagccaa catattcctg tgtgctctgt cttcgctatt caccaggccc ataaaagata 781 taatagggaa gctaaggcct cttaacatcc tcaacatctt ggcctcatgt gattggactt 841 ttgcaggcat agtggagtcc tcgatactct tggcagaact ctttggagtt ttctggacac 901 ccccagacgt gtctgcgatg attgcccctt tactcggtga ttacgagcta caaggacctg 961 aggaccttgc agtggagctc gtccccgtag tgatgggggg aattggtttg gtgctaggat 1021 tcaccaaaga gaagattggg aaaatgttgt catctgctgc atccaccttg agagcttgta 1081 aagatcttgg tgcatatggg ctagagatcc taaagttggt catgaagtgg ttcttcccga 1141 agaaagagga agcaaatgaa ttggctatag tgagatccat cgaggatgca gtcctggatc 1201 tcgaggcaat tgaaaacaac catatgacca ccttgctcaa agacaaagac agtctgtcaa 1261 cctacatgag aaccctcgac cttgaggagg agaaagccag gaaactctca accaagtctg 1321 cttcacctga catcgtgggc acaatcaacg cccttctagc gagaatcgct gctgcacgtt 1381 ctctggtgca tcgagcgaag gaggaacttt ccagcagacc aagacctgta gtgttgatga 1441 tatcaggcag accaggaata gggaaaaccc accttgctag ggaagtggct aagagaatcg 1501 cagcctccct tacaggagac cagcgtgtag gcctcgtccc acgcaatggc gtcgaccatt 1561 gggatgcgta caagggggag agggtcgtcc tatgggacga ctatggaatg agcaacccca 1621 tccacgatgc cctcaggttg caagaactcg ctgacacttg ccccctcacc ctaaactgtg 1681 acaggattga gaataaagga aaggtctttg acagcgatgt catcattatc accactaatc 1741 tggctaaccc agcaccactg gactatgtca actttgaagc atgctcgagg cgcatcgact 1801 tcctcgtgta tgcagaagcc cctgaggtcg aaaaggcgaa acgtgacttc ccaggccaac 1861 ccgacatgtg gaagaacgcc ttcagttctg atttctcaca cataaaacta acattggctc 1921 cacagggtgg cttcgacaag aacgggaata ccccacacgg aaagggcgtc atgaagactc 1981 tcaccactgg ctcccttatt gcccgggcat cagggctact ccatgagagg ctagatgaat 2041 ttgaactaca gggcccaact ctcaccacct tcaactttga tcgcaacaaa gtgcttgcct 2101 ttagacaact tgctgctgaa aacaaatatg ggttgatgga cacaatgaaa gttgggaggc 2161 agctcaagga tgtcagaaca atgccagagc ttaaacaagc actcaagaac atctcaatca 2221 agaagtgcca gatagtgcat aatggttgca cctacacact tgagtctgat ggcaagggca 2281 atgtgaaagt tgacagagtt caaagcgcct ccgtgcagac caacaatgag ctgactggcg 2341 ccctgcacca tctaaggtgc gccagaataa gatactacgt caggtgtgtc caggaggccc 2401 tgtattccat cattcagatt gctggggctg catttgtcac cacgcgcatc gtcaagcgca 2461 tgaacataca agacctatgg tccaagccac aagtggaaaa cacagaggag actaccggca 2521 aggacgggcg tccaagaccc aaagatgatg aggagttcgt catttcatcc gacgacatca 2581 aaactgaggg taagaaaggg aagaacaaga ctggccgcgg caagaagcac acagccttct 2641 caagcaaagg tctcagtgat gaagagtacg atgagtacaa gaggattaga gaggaaagga 2701 atggcaagta ctccatagaa gagtaccttc aggacaggga caaatactat gaggaggtgg 2761 ccattgccag ggcgactgag gaggacttct gtgaggagga ggaggccaag atccggcaga 2821 ggatcttcag gccaacaagg aaacaacgca aggaggaaag agcttctctc ggtttagtta 2881 caggttctga aattaggaaa agaaatccag atgattttaa acccaagggg aaactgtggg 2941 ctgacgatga cagaagtgtg gactacaatg agaaactcag ttttgaagcc ccaccaagca 3001 tctggtcgag gatagtcaac tttggttcag gttggggatt ctgggtctcc cccagtctgt 3061 tcataacatc aacccacgtc ataccccagg gcgcaaagga gttctttgga gtccccatca 3121 aacaaattca ggtacataag tcaggcgaat tctgtcgctt gagattccca aaaccaatca 3181 ggactgatgt gacgggcatg atcttagaag aaggtgcacc cgagggcacc gtggtcacac 3241 tactcatcaa aaggtccact ggagaactca tgcccctagc agctaggatg gggacccatg 3301 caaccatgaa aatccaggga cgcactgttg gaggtcaaat gggcatgctt ctgacaggat 3361 ccaacgccaa aagcatggac ctgggtacca caccaggtga ttgtggctgt ccctacatct 3421 acaagagagg aaatgactat gtggtcattg gagtccacac ggctgccgct cgtgggggaa 3481 acactgtcat atgtgccacc caggggagtg agggagaggc tatacttgaa ggtggtgaca 3541 ataaagggac atactgtggt gcaccaatcc taggcccagg gagtgcccca aaacttagca 3601 ccaagaccaa gttctggaga tcgtccacag catcactccc acctggcacc tatgaaccag 3661 cctatcttgg tggcaaggac cccagagtca agggtggccc ttcactgcag caagttatga 3721 gggatcagtt gaagccattc acagagccca ggggcaagcc accaaagcca agtgtgttgg 3781 aagctgccaa gaaaaccatc atcaatgtcc ttgagcaaac aattgatcca cctgagaaat 3841 ggtcattcgc acaagcttgc gcgtcccttg acaagaccac ttccagtggc catccgcatc 3901 acatgcggaa aaacgactgc tggaatgggg agtccttcac aggcaagctg gcagaccagg 3961 cttccaaggc caacctgatg tttgaagaag ggaagaacat gaccccagtc tacacagctg 4021 cgcttaagga tgaattagtt aaaactgata aaatttatgg taagatcaag aagaggcttc 4081 tctggggctc ggatttggcg accatgattc ggtgtgctcg agcattcgga ggcctaatgg 4141 atgaactcaa agcgcactgt gtcacacttc ccattagagt tggtatgaat atgaatgagg 4201 atggccccat tatcttcgag aggcattcca ggtacacata ccactatgat gctgattact 4261 ctcgatggga ttcaacacaa cagagagctg tgttggcagc agctctagaa atcatggtta 4321 aattctcccc agaaccacat ttggctcagg tagtcgcaga agaccttctt tctcctagcg 4381 tggtggacgt gggtgacttc acaatatcaa tcaacgaggg tcttccctct ggggtgccct 4441 gcacctccca atggaactcc atcgctcact ggcttctcac tctctgcgcg ctctctgaag 4501 ttacaaactt gtctcctgac accatacagg ctaattccct cttctctttt tatggtgatg 4561 atgaaattgt tagcacagac ataaaattgg acccagagaa gttgacagca aagctcaggg 4621 aatatgggtt aaagccaacc cgccctgaca aaactgaagg accccttacc atctctgaag 4681 acttgaatgg cctgactttc ctacggagga ctgtgacccg cgacccagct ggttggtttg 4741 gaaaattgga gcagagctca atactcaggc aaatgtactg gactaggggt tccaaccatg 4801 aagacccatt tgaaacaatg atcccacact cccaaagacc catacaattg atgtccctac 4861 tgggggaggc cgcactccac ggcccagcat tctacagcaa aatcagcaag ttggtcattg 4921 cagagctaaa agaaggtggc atggattttt acgtgcccag acaagagcca atgttcagat 4981 ggatgagatt ctcagatctg agcacgtggg agggcgatcg caatctggct cccagttttg 5041 tgaatgaaga tggcgtcgaa tgacgccacc ccatctgatg ggtccacagc caacctcgtc 5101 ccagaggtca acaatgaggt tatggctttg gagcccgttg ttggtgccgc gattgcggca 5161 cctgtagcgg gccaacaaaa tgtaattgac ccctggatta gaaataattt tgtacaagcc 5221 cctggtggag agtttacagt atcccctaga aacgctccag gtgaaatatt atggagcgcg 5281 cccttgggcc ctgatttgaa tccctacctt tcccatttgg ccagaatgta caatggttat 5341 gcaggtggtt ttgaagtgca ggtaatcctc gcggggaacg cgttcaccgc cgggaaaatc 5401 atatttgcag cagtcccacc aaatttccca actgaaggct tgagccccag ccaggtcact 5461 atgttccccc atataatagt agatgttagg caactggaac ctgtgttgat ccccctgcct 5521 gatgttagga ataatttcta tcattacaat caatcaaatg accccaccat caaattgata 5581 gcaatgctgt atacaccact tagggctaac aatgctgggg acgatgtctt cacagtctct 5641 tgtcgagttc tcacgagacc atcccccgat tttgatttca tatttttggt gccacccaca 5701 gttgagtcaa gaactaaacc attctctgtc ccaatcttaa ctgttgagga gatgaccaat 5761 tcaaggttcc ctattccttt ggaaaagttg ttcacgggtc ccagcagtgc ctttgttgtt 5821 caaccacaaa atggcagatg cacgactgat ggcgtgcttt taggcaccac ccaactgtct 5881 cctgtcaaca tctgcacctt cagaggggat gtcacccaca ttgcaggtac tcaaaattac 5941 acaatgaatc tggcctccca gaattggaac aattatgacc caacagaaga gatcccagct 6001 cctctgggaa ccccagattt tgtaggaaag atccaaggcg tgctcaccca aaccacaagg 6061 agggacggct cgacccgcgg tcacaaagcc acagtaagca ctggaagtgt ccacttcacc 6121 ccaaagctgg gcagcgttca attctctact gatacaagca atgactttga aactggccaa 6181 aacacgagat tcaccccagt cggtgtcgtc caggatggta gtaccaccca ccaaaatgaa 6241 ccccaacaat gggtgctccc agactattca ggtagagata gtcacaatgt acacctagcc 6301 cctgccgtgg cccccacttt tccgggtgag caacttcttt tctttaggtc cactatgccc 6361 ggatgcagcg ggtatcccaa catgaatttg gattgcctac tcccccagga gtgggtgcag 6421 cacttctacc aagagtcagc cccagcacaa tctgatgtgg cactgctgag atttgtgaat 6481 ccagacacag gtagggtttt gtttgagtgc aagcttcata aaccaggcta tgtaacagtg 6541 gctcacactg gccaacatga tttggttatc ccccccaatg gctattttag atttgattcc 6601 tgggtcaacc aattctacac acttgccccc atgggaaatg gagcggggcg tagacgtgca 6661 ttataatggc tggagctttc tttgctggat tggcatctga tgtccttggt tctggacttg 6721 gctctctaat caatgctggg gctggggcca tcaaccaaaa agttgagttt gaaaataaca 6781 gaaaattgca acaagcttcc ttccaattta gcagtaacct acaacaggct tcctttcaac 6841 atgataaaga gatgctccaa gcacaaattg aggccaccaa aaagttgcaa caggaaatga 6901 tgaaagttaa acaggcaatg ctcctagagg gtgggttctc tgagacagat gcagcccgtg 6961 gggcagtcaa cgcccccatg acaaaggctt tggactggag cggaacaagg tactgggctc 7021 ccgatgctag gaccacaaca tacaatgcag gccgcttttc cacccctcaa ccctcggggg 7081 catcgtcagg aagaactaat cttagggcta ctgtccccgc tcggggctcc tccagcacac 7141 cctctaatgc ttctactgct acttctgtgt actcaaatca aactgcttca acgagacttg 7201 gttctacagc tggttctggt accagtgtct cgagcatccc gtcaactgca aggactagga 7261 gctgggttga ggatcaaaac aggaatttgt cacctttcat gaggggggcc cacaacatat 7321 cgtttgtcac cccaccatct agtagatcct ctagccaagg cacagtctca accgtgccta 7381 aagaagtttt ggactcctgg actggcgctt tcaacacgcg caggcagcct ctcttcgctc 7441 acattcgtaa gcgaggggag tcacgagtgt aatgtgaaaa gacagaaatt gaata //