Typing tool
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Typing tool
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Complete norovirus genomes
| JX445154 | GII.4 Hunter | |
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| GII.P4 Apeldoorn |
ORF1: 1..5063
ORF2: 5044..6666
ORF3: 6666..7472
LOCUS JX445154 7495 bp RNA linear VRL 10-OCT-2012
DEFINITION Norovirus Hu/GII.4/AlbertaEI190/2006/CA non-structural polyprotein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION JX445154
VERSION JX445154.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/AlbertaEI190/2006/CA
ORGANISM Norovirus Hu/GII.4/AlbertaEI190/2006/CA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7495)
AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and
Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health
(ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada
FEATURES Location/Qualifiers
source 1..7495
/organism="Norovirus Hu/GII.4/AlbertaEI190/2006/CA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/AlbertaEI190/2006/CA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1238276"
/geo_loc_name="Canada"
/collection_date="May-2006"
/note="genotype: GII.4"
CDS <1..5063
/codon_start=3
/product="non-structural polyprotein"
/protein_id="AFU55691.1"
/translation="ANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQPPPREISQRPP
RPPTPELVKNIPPPPPNGEDEIVISYSVKDGVSGLPDLSTVRQPEESNTAFSVPPLNQ
RENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLARVELTPLSLFW
RPVYTPQYLISPDALKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGF
FRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKLRPLNILNILASC
DWTFAGIVESSILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGI
GLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAIVRS
IEDAVLDLEAIENNHMTTLLKDKDSLSTYMRTLDLEEEKARKLSTKSASPDIVGTINA
LLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIAASLTGDQR
VGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKG
KVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWK
NAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEFEL
QGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTMPELKQALKNISIK
KCQIVHNGCTYTLESDGKGNVKVDRVQSASVQTNNELTGALHHLRCARIRYYVRCVQE
ALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTGKDGRPRPKDDEEFVISS
DDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDK
YYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDF
KPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQG
AKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIKRSTGE
LMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDY
VVIGVHTAAARGGNTVICATQGSEGEAILEGGDNKGTYCGAPILGPGSAPKLSTKTKF
WRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAA
KKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQA
SKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGL
MDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAALE
IMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTL
CALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTE
GPLTISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGSNHEDPFETMIPHS
QRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLST
WEGDRNLAPSFVNEDGVE"
CDS 5044..6666
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AFU55692.1"
/translation="MKMASNDATPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDG
STTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKPGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
CDS 6666..7472
/codon_start=1
/product="minor structural protein"
/protein_id="AFU55693.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAVN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGASSGRTNLRATVPARGSSSTPS
NASTATSVYSNQTASTRLGSTAGSGTSVSSIPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
3'UTR 7473..>7495
ORIGIN
1 ttgctaacag caacaacgac accgcaaaat cttcaagtga cggagtgctt tctagcatgg
61 ctgtcacttt taaacgagcc ctcggggcgc ggcctaagca gcctcccccg agggaaatat
121 cacaaagacc cccacgacca cctactccag aactggtcaa aaatatcccc cctcccccgc
181 ccaacggaga ggatgaaata gtgatttctt atagtgtcaa agatggtgtt tccggtttgc
241 ctgatctttc caccgtcagg caaccggaag aatctaacac ggctttcagt gtccctccac
301 tcaatcagag ggagaataga gatgctaagg agccactgac tggaacaatt ctggaaatgt
361 gggatggaga aatctaccat tatggcctgt atgtggagcg aggtcttgta ctaggtgtgc
421 acaaaccacc agctgccatt agcctcgcta gggtcgaact gacaccactc tccttgttct
481 ggagacctgt gtatactccc cagtacctca tctctccaga cgccctcaag aaattacacg
541 gagagacgtt cccctacaca gcctttgaca acaattgcta tgccttttgt tgctgggtcc
601 tggacctaaa cgactcgtgg ctgagtagga gaatgatcca gagaacaact ggcttcttca
661 ggccctacca agattggaat aggaaacccc tccccactat ggatgactcc aagttaaaga
721 aggtagccaa catattcctg tgtgctctgt cttcgctatt caccaggccc ataaaagata
781 taatagggaa gctaaggcct cttaacatcc tcaacatctt ggcctcatgt gattggactt
841 ttgcaggcat agtggagtcc tcgatactct tggcagaact ctttggagtt ttctggacac
901 ccccagacgt gtctgcgatg attgcccctt tactcggtga ttacgagcta caaggacctg
961 aggaccttgc agtggagctc gtccccgtag tgatgggggg aattggtttg gtgctaggat
1021 tcaccaaaga gaagattggg aaaatgttgt catctgctgc atccaccttg agagcttgta
1081 aagatcttgg tgcatatggg ctagagatcc taaagttggt catgaagtgg ttcttcccga
1141 agaaagagga agcaaatgaa ttggctatag tgagatccat cgaggatgca gtcctggatc
1201 tcgaggcaat tgaaaacaac catatgacca ccttgctcaa agacaaagac agtctgtcaa
1261 cctacatgag aaccctcgac cttgaggagg agaaagccag gaaactctca accaagtctg
1321 cttcacctga catcgtgggc acaatcaacg cccttctagc gagaatcgct gctgcacgtt
1381 ctctggtgca tcgagcgaag gaggaacttt ccagcagacc aagacctgta gtgttgatga
1441 tatcaggcag accaggaata gggaaaaccc accttgctag ggaagtggct aagagaatcg
1501 cagcctccct tacaggagac cagcgtgtag gcctcgtccc acgcaatggc gtcgaccatt
1561 gggatgcgta caagggggag agggtcgtcc tatgggacga ctatggaatg agcaacccca
1621 tccacgatgc cctcaggttg caagaactcg ctgacacttg ccccctcacc ctaaactgtg
1681 acaggattga gaataaagga aaggtctttg acagcgatgt catcattatc accactaatc
1741 tggctaaccc agcaccactg gactatgtca actttgaagc atgctcgagg cgcatcgact
1801 tcctcgtgta tgcagaagcc cctgaggtcg aaaaggcgaa acgtgacttc ccaggccaac
1861 ccgacatgtg gaagaacgcc ttcagttctg atttctcaca cataaaacta acattggctc
1921 cacagggtgg cttcgacaag aacgggaata ccccacacgg aaagggcgtc atgaagactc
1981 tcaccactgg ctcccttatt gcccgggcat cagggctact ccatgagagg ctagatgaat
2041 ttgaactaca gggcccaact ctcaccacct tcaactttga tcgcaacaaa gtgcttgcct
2101 ttagacaact tgctgctgaa aacaaatatg ggttgatgga cacaatgaaa gttgggaggc
2161 agctcaagga tgtcagaaca atgccagagc ttaaacaagc actcaagaac atctcaatca
2221 agaagtgcca gatagtgcat aatggttgca cctacacact tgagtctgat ggcaagggca
2281 atgtgaaagt tgacagagtt caaagcgcct ccgtgcagac caacaatgag ctgactggcg
2341 ccctgcacca tctaaggtgc gccagaataa gatactacgt caggtgtgtc caggaggccc
2401 tgtattccat cattcagatt gctggggctg catttgtcac cacgcgcatc gtcaagcgca
2461 tgaacataca agacctatgg tccaagccac aagtggaaaa cacagaggag actaccggca
2521 aggacgggcg tccaagaccc aaagatgatg aggagttcgt catttcatcc gacgacatca
2581 aaactgaggg taagaaaggg aagaacaaga ctggccgcgg caagaagcac acagccttct
2641 caagcaaagg tctcagtgat gaagagtacg atgagtacaa gaggattaga gaggaaagga
2701 atggcaagta ctccatagaa gagtaccttc aggacaggga caaatactat gaggaggtgg
2761 ccattgccag ggcgactgag gaggacttct gtgaggagga ggaggccaag atccggcaga
2821 ggatcttcag gccaacaagg aaacaacgca aggaggaaag agcttctctc ggtttagtta
2881 caggttctga aattaggaaa agaaatccag atgattttaa acccaagggg aaactgtggg
2941 ctgacgatga cagaagtgtg gactacaatg agaaactcag ttttgaagcc ccaccaagca
3001 tctggtcgag gatagtcaac tttggttcag gttggggatt ctgggtctcc cccagtctgt
3061 tcataacatc aacccacgtc ataccccagg gcgcaaagga gttctttgga gtccccatca
3121 aacaaattca ggtacataag tcaggcgaat tctgtcgctt gagattccca aaaccaatca
3181 ggactgatgt gacgggcatg atcttagaag aaggtgcacc cgagggcacc gtggtcacac
3241 tactcatcaa aaggtccact ggagaactca tgcccctagc agctaggatg gggacccatg
3301 caaccatgaa aatccaggga cgcactgttg gaggtcaaat gggcatgctt ctgacaggat
3361 ccaacgccaa aagcatggac ctgggtacca caccaggtga ttgtggctgt ccctacatct
3421 acaagagagg aaatgactat gtggtcattg gagtccacac ggctgccgct cgtgggggaa
3481 acactgtcat atgtgccacc caggggagtg agggagaggc tatacttgaa ggtggtgaca
3541 ataaagggac atactgtggt gcaccaatcc taggcccagg gagtgcccca aaacttagca
3601 ccaagaccaa gttctggaga tcgtccacag catcactccc acctggcacc tatgaaccag
3661 cctatcttgg tggcaaggac cccagagtca agggtggccc ttcactgcag caagttatga
3721 gggatcagtt gaagccattc acagagccca ggggcaagcc accaaagcca agtgtgttgg
3781 aagctgccaa gaaaaccatc atcaatgtcc ttgagcaaac aattgatcca cctgagaaat
3841 ggtcattcgc acaagcttgc gcgtcccttg acaagaccac ttccagtggc catccgcatc
3901 acatgcggaa aaacgactgc tggaatgggg agtccttcac aggcaagctg gcagaccagg
3961 cttccaaggc caacctgatg tttgaagaag ggaagaacat gaccccagtc tacacagctg
4021 cgcttaagga tgaattagtt aaaactgata aaatttatgg taagatcaag aagaggcttc
4081 tctggggctc ggatttggcg accatgattc ggtgtgctcg agcattcgga ggcctaatgg
4141 atgaactcaa agcgcactgt gtcacacttc ccattagagt tggtatgaat atgaatgagg
4201 atggccccat tatcttcgag aggcattcca ggtacacata ccactatgat gctgattact
4261 ctcgatggga ttcaacacaa cagagagctg tgttggcagc agctctagaa atcatggtta
4321 aattctcccc agaaccacat ttggctcagg tagtcgcaga agaccttctt tctcctagcg
4381 tggtggacgt gggtgacttc acaatatcaa tcaacgaggg tcttccctct ggggtgccct
4441 gcacctccca atggaactcc atcgctcact ggcttctcac tctctgcgcg ctctctgaag
4501 ttacaaactt gtctcctgac accatacagg ctaattccct cttctctttt tatggtgatg
4561 atgaaattgt tagcacagac ataaaattgg acccagagaa gttgacagca aagctcaggg
4621 aatatgggtt aaagccaacc cgccctgaca aaactgaagg accccttacc atctctgaag
4681 acttgaatgg cctgactttc ctacggagga ctgtgacccg cgacccagct ggttggtttg
4741 gaaaattgga gcagagctca atactcaggc aaatgtactg gactaggggt tccaaccatg
4801 aagacccatt tgaaacaatg atcccacact cccaaagacc catacaattg atgtccctac
4861 tgggggaggc cgcactccac ggcccagcat tctacagcaa aatcagcaag ttggtcattg
4921 cagagctaaa agaaggtggc atggattttt acgtgcccag acaagagcca atgttcagat
4981 ggatgagatt ctcagatctg agcacgtggg agggcgatcg caatctggct cccagttttg
5041 tgaatgaaga tggcgtcgaa tgacgccacc ccatctgatg ggtccacagc caacctcgtc
5101 ccagaggtca acaatgaggt tatggctttg gagcccgttg ttggtgccgc gattgcggca
5161 cctgtagcgg gccaacaaaa tgtaattgac ccctggatta gaaataattt tgtacaagcc
5221 cctggtggag agtttacagt atcccctaga aacgctccag gtgaaatatt atggagcgcg
5281 cccttgggcc ctgatttgaa tccctacctt tcccatttgg ccagaatgta caatggttat
5341 gcaggtggtt ttgaagtgca ggtaatcctc gcggggaacg cgttcaccgc cgggaaaatc
5401 atatttgcag cagtcccacc aaatttccca actgaaggct tgagccccag ccaggtcact
5461 atgttccccc atataatagt agatgttagg caactggaac ctgtgttgat ccccctgcct
5521 gatgttagga ataatttcta tcattacaat caatcaaatg accccaccat caaattgata
5581 gcaatgctgt atacaccact tagggctaac aatgctgggg acgatgtctt cacagtctct
5641 tgtcgagttc tcacgagacc atcccccgat tttgatttca tatttttggt gccacccaca
5701 gttgagtcaa gaactaaacc attctctgtc ccaatcttaa ctgttgagga gatgaccaat
5761 tcaaggttcc ctattccttt ggaaaagttg ttcacgggtc ccagcagtgc ctttgttgtt
5821 caaccacaaa atggcagatg cacgactgat ggcgtgcttt taggcaccac ccaactgtct
5881 cctgtcaaca tctgcacctt cagaggggat gtcacccaca ttgcaggtac tcaaaattac
5941 acaatgaatc tggcctccca gaattggaac aattatgacc caacagaaga gatcccagct
6001 cctctgggaa ccccagattt tgtaggaaag atccaaggcg tgctcaccca aaccacaagg
6061 agggacggct cgacccgcgg tcacaaagcc acagtaagca ctggaagtgt ccacttcacc
6121 ccaaagctgg gcagcgttca attctctact gatacaagca atgactttga aactggccaa
6181 aacacgagat tcaccccagt cggtgtcgtc caggatggta gtaccaccca ccaaaatgaa
6241 ccccaacaat gggtgctccc agactattca ggtagagata gtcacaatgt acacctagcc
6301 cctgccgtgg cccccacttt tccgggtgag caacttcttt tctttaggtc cactatgccc
6361 ggatgcagcg ggtatcccaa catgaatttg gattgcctac tcccccagga gtgggtgcag
6421 cacttctacc aagagtcagc cccagcacaa tctgatgtgg cactgctgag atttgtgaat
6481 ccagacacag gtagggtttt gtttgagtgc aagcttcata aaccaggcta tgtaacagtg
6541 gctcacactg gccaacatga tttggttatc ccccccaatg gctattttag atttgattcc
6601 tgggtcaacc aattctacac acttgccccc atgggaaatg gagcggggcg tagacgtgca
6661 ttataatggc tggagctttc tttgctggat tggcatctga tgtccttggt tctggacttg
6721 gctctctaat caatgctggg gctggggcca tcaaccaaaa agttgagttt gaaaataaca
6781 gaaaattgca acaagcttcc ttccaattta gcagtaacct acaacaggct tcctttcaac
6841 atgataaaga gatgctccaa gcacaaattg aggccaccaa aaagttgcaa caggaaatga
6901 tgaaagttaa acaggcaatg ctcctagagg gtgggttctc tgagacagat gcagcccgtg
6961 gggcagtcaa cgcccccatg acaaaggctt tggactggag cggaacaagg tactgggctc
7021 ccgatgctag gaccacaaca tacaatgcag gccgcttttc cacccctcaa ccctcggggg
7081 catcgtcagg aagaactaat cttagggcta ctgtccccgc tcggggctcc tccagcacac
7141 cctctaatgc ttctactgct acttctgtgt actcaaatca aactgcttca acgagacttg
7201 gttctacagc tggttctggt accagtgtct cgagcatccc gtcaactgca aggactagga
7261 gctgggttga ggatcaaaac aggaatttgt cacctttcat gaggggggcc cacaacatat
7321 cgtttgtcac cccaccatct agtagatcct ctagccaagg cacagtctca accgtgccta
7381 aagaagtttt ggactcctgg actggcgctt tcaacacgcg caggcagcct ctcttcgctc
7441 acattcgtaa gcgaggggag tcacgagtgt aatgtgaaaa gacagaaatt gaata
//