Typing tool
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Typing tool
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Complete norovirus genomes
| JX445153 | GII.4 Hunter | |
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| GII.P4 Hunter |
ORF1: 1..5063
ORF2: 5044..6666
ORF3: 6666..7463
LOCUS JX445153 7485 bp RNA linear VRL 10-OCT-2012
DEFINITION Norovirus Hu/GII.4/AlbertaEI142/2006/CA non-structural polyprotein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION JX445153
VERSION JX445153.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/AlbertaEI142/2006/CA
ORGANISM Norovirus Hu/GII.4/AlbertaEI142/2006/CA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7485)
AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and
Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health
(ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada
FEATURES Location/Qualifiers
source 1..7485
/organism="Norovirus Hu/GII.4/AlbertaEI142/2006/CA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/AlbertaEI142/2006/CA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1238275"
/country="Canada"
/collection_date="Mar-2006"
/note="genotype: GII.4"
CDS <1..5063
/codon_start=3
/product="non-structural polyprotein"
/protein_id="AFU55688.1"
/translation="ANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQPPPRELPQRPP
RPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPEESNTAFSVPPLNQ
RENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLARVELTPLSLFW
RPVYTPQYLISPDALKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGF
FRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKLRPLNILNILASC
DWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGI
GLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAIVRS
IEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINA
LLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIAASLTGDQR
VGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKG
KVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAESPEVEKAKRDFPGQPDMWK
NAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEFEL
QGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTMPELKQALKNISIK
KCQIVHNGCTYTLESDGKGNVKVDRVQSASVQTNNELTGALHHLRCARIRYYVRCVQE
ALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGCPKPKGDEEFVISS
DDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDK
YYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDF
KPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQG
AKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIKRSTGE
LMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDY
VVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPKLSTKTKF
WRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAA
KKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQA
SKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGL
MDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAALE
IMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTL
CALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTE
GPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGSNHEDPSETMIPHS
QRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLST
WEGDRNLAPSFVNEDGVE"
CDS 5044..6666
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AFU55689.1"
/translation="MKMASNDATPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGAPDFVGKIQGVL
TQTTRGDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDLETGQNTRFTPVGVVQDG
STTHQNEPQQWVLPNYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
CDS 6666..7463
/codon_start=1
/product="minor structural protein"
/protein_id="AFU55690.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIETTKKLQQEMMKVKQAMLLEGGFSETDAARGAVN
APMTKALDWSGTRYWAPDARTTTYNAGRFSAPQPSGASPGRTNLRATVPARGSSSTPS
NASTATSVYSNQTASTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNFMRGAHNISFV
TPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
3'UTR 7464..>7485
ORIGIN
1 ttgctaacag caacaacgac accgcaaaat cttcaagtga cggagtgctt tctagcatgg
61 ctgtcacttt taaacgagcc ctcggggcgc ggcctaagca gcctcccccg agggaattac
121 cacaaagacc cccacgacca cctactccag aactggtcaa aaatatcccc cctcccccgc
181 ccaacggaga ggatgaaata gtggtttctt atagtgtcaa agatggtgtt tccggtttgc
241 ctgatctttc caccgtcagg caaccggagg aatctaacac ggccttcagt gtccctccac
301 tcaatcagag agagaataga gatgctaagg agccactgac tggaacaatt ctggaaatgt
361 gggatggaga aatctaccat tatggtctgt atgtggagcg aggtcttgta ctaggtgtgc
421 acaaaccacc agctgccatt agcctcgcta gggtcgaact gacaccactc tccttgttct
481 ggagacctgt gtatactcct cagtacctca tctctccaga cgctctcaag aaattacacg
541 gagagacgtt cccctacaca gcctttgaca acaattgcta tgccttttgt tgctgggtcc
601 tggacctaaa cgactcgtgg ctgagtagga gaatgatcca gagaacaact ggcttcttca
661 ggccctacca agattggaat aggaaacccc tccccactat ggatgactcc aagttaaaga
721 aggtagctaa catattcctg tgtgctctgt cttcgctatt caccaggccc ataaaagata
781 taatagggaa gctaaggcct cttaacatcc tcaacatctt ggcctcatgt gattggactt
841 ttgcaggcat agtggagtcc ttgatactct tggcagaact ctttggagtt ttctggacac
901 ccccagatgt gtctgcgatg attgccccct tactcggtga ttacgagctg caaggacctg
961 aggaccttgc agtggagctc gtccctgtag tgatgggggg aattggtttg gtgctaggat
1021 tcaccaaaga gaagattggg aaaatgttgt catctgccgc atcaaccttg agagcttgta
1081 aagatcttgg tgcatatggg ctagagatcc taaagttggt catgaagtgg ttcttcccga
1141 agaaagagga ggcaaatgaa ctggctatag tgagatccat cgaggatgca gtcctggatc
1201 tcgaggcaat tgaaaacaac catatgacca ccttgctcaa agacaaagac agtctggcaa
1261 cctacatgag aacccttgac cttgaggagg agaaagccag gaaactctca accaagtctg
1321 cttcacctga catcgtgggc acaatcaacg cccttctggc gagaatcgct gctgcacgtt
1381 ctctggtgca tcgagcgaag gaggaacttt ccagcagacc aaggcctgta gtgttgatga
1441 tatcaggcag gccaggaata gggaagaccc accttgctag ggaagtggct aagagaatcg
1501 cagcctccct tacaggagac cagcgtgtag gcctcgtccc acgcaatggc gtcgaccatt
1561 gggatgcgta caagggggag agagtcgtcc tatgggacga ctatggaatg agcaacccca
1621 tccacgatgc cctcagattg caagaacttg ctgacacttg ccccctcacc ctaaactgtg
1681 acaggattga gaacaaagga aaggtctttg acagcgatgt catcattatc accactaatc
1741 tggctaaccc agcaccactg gactatgtca actttgaagc atgctcgagg cgcatcgact
1801 tcctcgtgta tgcagaatcc cctgaggtcg aaaaggcgaa acgtgacttc ccaggccaac
1861 ccgacatgtg gaagaacgcc ttcagttctg atttctcaca cataaaacta acattggctc
1921 cacagggtgg cttcgacaag aacgggaaca ccccacacgg gaagggcgtc atgaagactc
1981 tcaccactgg ctcccttatt gcccgggcat cagggctact ccatgagagg ctagatgagt
2041 ttgaactaca gggcccaact ctcaccacct tcaactttga tcgcaacaaa gtgcttgcct
2101 ttagacaact tgctgctgaa aacaaatatg ggttgatgga cacaatgaaa gttgggaggc
2161 agctcaagga tgtcagaaca atgccagagc ttaaacaagc actcaagaat atctcaatca
2221 agaagtgcca gatagtgcat aatggttgca cctacacact tgagtctgat ggcaagggca
2281 acgtgaaagt tgacagagtt caaagcgcct ccgtgcagac caacaatgag ctgactggcg
2341 ccctgcacca tctaaggtgc gccagaataa gatactatgt caggtgtgtc caggaggccc
2401 tgtattccat catccagatt gctggggctg catttgtcac cacgcgcatc gtcaagcgca
2461 tgaatataca agacctatgg tccaagccac aagtggaaaa cacagaggag accaccagca
2521 aagacgggtg tccaaaaccc aaaggtgatg aggagttcgt catttcatcc gacgacatca
2581 aaaccgaggg taagaaagga aagaacaaga ctggccgcgg caagaagcac acagccttct
2641 caagcaaagg cctcagtgat gaagagtacg atgagtacaa gagaattaga gaggaaagga
2701 atggcaagta ctccatagaa gagtaccttc aggacaggga caaatactat gaggaggtgg
2761 ccattgccag ggcgactgag gaggacttct gtgaagagga ggaggccaag atccggcaga
2821 ggatcttcag gccaacaagg aaacaacgca aggaggaaag agcttctctc ggtttagtta
2881 caggttctga aattaggaaa agaaacccag atgatttcaa gcccaagggg aaactgtggg
2941 ctgacgatga cagaagtgtg gactacaatg agaaactcag ttttgaagcc ccaccaagca
3001 tctggtcgag gatagtcaac tttggttcag gttggggatt ctgggtctcc cccagtctgt
3061 tcataacatc aacccatgtc ataccccagg gcgcaaagga gttctttgga gtccccatca
3121 aacaaatcca ggtacataag tcaggcgaat tctgtcgctt gagattccca aaaccaatca
3181 ggactgatgt gacgggcatg atcttggaag aaggtgcacc cgagggcacc gtggtcacac
3241 tactcatcaa aaggtccact ggagaactca tgcccctagc agctaggatg ggaacccatg
3301 caaccatgaa aatccaagga cgcactgttg gaggtcaaat gggcatgctt ctgacaggat
3361 ccaacgccaa aagcatggac ctgggtacca caccaggtga ttgtggctgt ccctacatct
3421 acaagagagg aaatgactat gtggtcattg gagtccacac ggctgccgct cgtgggggaa
3481 acactgtcat atgtgccacc caggggagtg agggagaggc tacacttgaa ggtggtgaca
3541 ataaagggac atactgtggt gcaccaatcc taggcccagg gagtgcccca aaacttagca
3601 ccaagaccaa attctggaga tcgtccacag catcactccc acctggcacc tatgaaccag
3661 cctatcttgg tggcaaggac cccagagtca agggtggccc ttcactgcag caagtcatga
3721 gggatcagtt gaagccattt acagagccca ggggcaagcc accaaagcca agtgtgttgg
3781 aagctgccaa gaaaaccatc atcaatgtcc ttgagcaaac aattgaccca cctgagaaat
3841 ggtcattcgc acaagcttgc gcgtcccttg acaagaccac ttccagtggc catccgcatc
3901 acatgcggaa aaacgactgc tggaacgggg agtccttcac aggcaagctg gcagaccagg
3961 cttccaaggc caacctgatg tttgaagaag ggaagaacat gaccccagtc tatacagctg
4021 cgcttaagga tgaattagtt aagactgaca aaatttatgg taagatcaag aagaggcttc
4081 tctggggctc ggatttggcg accatgattc ggtgtgctcg agcattcgga ggcctaatgg
4141 atgaactcaa agcgcactgt gtcacacttc ccattagagt tggtatgaat atgaatgagg
4201 atggccccat catcttcgag aggcattcca ggtacacata ccactatgat gctgattact
4261 ctcgatggga ttcaacacaa cagagagccg tgttggcagc agctctagaa atcatggtta
4321 aattctcccc agaaccacat ttggctcagg tagtcgcaga agaccttctt tctcctagcg
4381 tggtggacgt gggtgacttc acaatatcaa tcaacgaggg tcttccctct ggggtgccct
4441 gcacctccca atggaactcc atcgctcact ggcttctcac tctctgtgcg ctctctgaag
4501 tcacaaactt gtctcctgac accatacagg ctaattccct cttctctttt tatggtgatg
4561 atgaaattgt tagcacagac ataaaattgg acccagagaa gttgacagca aagctcaggg
4621 aatatgggtt aaaaccaacc cgccctgaca aaactgaagg accccttgtc atctctgaag
4681 acttgaatgg cttgactttc ctgcggagaa ctgtgacccg cgacccggct ggttggtttg
4741 gaaaattgga gcagagttca atactcaggc aaatgtactg gactaggggt tccaaccatg
4801 aagacccatc tgaaacaatg attccacact cccaaagacc catacaattg atgtccctac
4861 tgggggaggc cgcactccac ggcccagcat tctacagcaa aatcagtaag ttagtcattg
4921 cagagctaaa agaaggtggc atggattttt acgtgcccag acaagagcca atgttcagat
4981 ggatgagatt ctcagatctg agcacgtggg agggcgatcg caatctggct cccagttttg
5041 tgaatgaaga tggcgtcgaa tgacgccacc ccatctgatg ggtccacagc caacctcgtc
5101 ccagaggtca acaatgaggt tatggctttg gagcccgttg ttggtgccgc gattgcggca
5161 cctgtagcgg gccaacaaaa tgtaattgac ccctggatta gaaataattt tgtacaagcc
5221 cctggtggag agtttacagt atcccctaga aacgctccag gtgaaatatt atggagcgcg
5281 cccttgggcc ctgatttgaa tccctacctt tcccatttgg ccagaatgta taatggttat
5341 gcaggtggtt ttgaagtgca ggtaatcctc gcggggaacg cgttcaccgc cgggaaaatc
5401 atatttgcag cagtcccacc aaatttccca actgaaggct tgagccccag ccaggtcact
5461 atgttccccc atataatagt agatgttagg caactggaac ctgtgttgat ccccctgcct
5521 gatgttagga ataatttcta tcattataat caatcaaatg accccaccat caaattgata
5581 gcaatgctgt atacaccact tagggctaac aatgctgggg acgatgtctt cacagtctct
5641 tgtcgagttc tcacgagacc atcccccgat tttgatttca tatttttggt gccacccaca
5701 gttgagtcaa gaactaaacc attctctgtc ccaatcttaa ctgttgagga gatgaccaat
5761 tcaagattcc ccattccttt ggaaaagttg ttcacgggtc ccagcagtgc ctttgttgtt
5821 caaccacaaa atggcagatg cacgactgat ggcgtgctct taggcaccac tcaactgtct
5881 cctgttaaca tctgcacctt cagaggggat gtcacccaca ttgcaggtac tcaaaactac
5941 acaatgaatc tggcctccca aaattggaac aattatgacc caacagaaga aatcccagcc
6001 cctctgggag ccccagattt tgtaggaaag atccaaggcg tgctcaccca aaccacaagg
6061 ggggatggct cgacccgcgg tcacaaagcc acagtgagca ctggaagtgt ccactttacc
6121 ccaaagctgg gcagtgttca attctctact gatacaagca atgaccttga aactggccaa
6181 aacacgaggt tcaccccagt cggtgtcgtc caggatggta gtaccaccca ccaaaatgaa
6241 ccccaacaat gggtgctccc aaactattca ggtagagata gtcacaatgt acacttagcc
6301 cctgccgtgg cccccacttt tccgggtgag caacttcttt tctttaggtc cactatgccc
6361 ggatgcagcg ggtatcccaa catgaatttg gattgcctac tcccccagga gtgggtgcag
6421 cacttctatc aagagtcagc cccagcacaa tctgatgtgg cactgctgag atttgtgaat
6481 ccagacacag gtagggtttt gtttgagtgc aagcttcata aatcaggcta tgtaacagtg
6541 gctcacactg gccaacatga tttggttatc ccccccaatg gttattttag atttgattcc
6601 tgggtcaacc aattctacac acttgccccc atgggaaatg gagcggggcg tagacgtgca
6661 ttataatggc tggagctttc tttgctggat tggcatctga tgtccttggc tctggacttg
6721 gctctctaat caatgctggg gctggggcca tcaaccaaaa agttgagttt gaaaataaca
6781 ggaaattgca acaagcttcc ttccaattta gcagcaacct acaacaggct tcctttcaac
6841 atgataaaga gatgctccaa gcacaaattg agaccaccaa aaagttgcaa caggaaatga
6901 tgaaagttaa acaggcaatg ctcctagagg gtgggttctc tgagacagat gcagcccgcg
6961 gggcagtcaa cgcccccatg acaaaggctt tggactggag cggaacaagg tactgggctc
7021 ccgatgctag gactacaaca tacaatgcag gccgcttttc cgcccctcaa ccctcggggg
7081 catcgccagg aagaactaat cttagggcta ctgtccccgc tcggggctcc tccagcacac
7141 cctctaatgc ttctactgcc acttctgtgt actcaaatca aactgcttca acgagacttg
7201 gttctacagc tggttctggt accagtgtct cgagcctccc gtcaactgca aggactagga
7261 gctgggttga ggatcaaaac aggaatttta tgaggggggc ccacaacata tcgtttgtca
7321 ccccaccatc tagtagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt
7381 tggactcctg gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta
7441 agcgagggga gtcacgggtg taatgtgaaa agacaaaatt gatta
//