Typing tool
|
Complete norovirus genomes
JX445152 | GII.4 Farmington Hills | ||
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GII.P4 Farmington Hills |
ORF1: 1..5084 ORF2: 5065..6687 ORF3: 6687..7493LOCUS JX445152 7515 bp RNA linear VRL 10-OCT-2012 DEFINITION Norovirus Hu/GII.4/AlbertaEI131/2004/CA non-structural polyprotein gene, partial cds; and major capsid protein and minor structural protein genes, complete cds. ACCESSION JX445152 VERSION JX445152.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/AlbertaEI131/2004/CA ORGANISM Norovirus Hu/GII.4/AlbertaEI131/2004/CA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7515) AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and Pang,X.L. TITLE Direct Submission JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health (ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada FEATURES Location/Qualifiers source 1..7515 /organism="Norovirus Hu/GII.4/AlbertaEI131/2004/CA" /mol_type="genomic RNA" /strain="Hu/GII.4/AlbertaEI131/2004/CA" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1238274" /country="Canada" /collection_date="Jul-2004" /note="genotype: GII.4" CDS <1..5084 /codon_start=3 /product="non-structural polyprotein" /protein_id="AFU55685.1" /translation="DASAAAVANSNDDTAKSSSDGVLSSMAVTFKRALGARSKQPPPR EIPQRPPRPPTPELVKKIPPPPPNGEDEIVISYSVKDGVSGLPELSTVRQPEEANTAF SVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVDRGLVLGVHKPPAAISLAKVEL TPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM IQRTTGFFRPYQDWNRKPLPTVDDSKLKKVANIFLCALSSLFTRPIKDIIGKLKPLNI LNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELV PVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN ELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD IVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIAA SLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC DRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP GQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHE RLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTMPELKQA LKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTSNELTGALHHLRCARIRY YVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEEVTNKDGCPKPKDD EEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE YLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIR KRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITS THVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLL IKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI YKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPK LSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPK PSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFT GKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRC ARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYRYHYDADYSRWDSTQQRA VLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSI AHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKP TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPS ETMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM RFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5065..6687 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AFU55686.1" /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGTHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGRIQGML TQTTRGDGSTRGHKATVSTGDVHFTPKLGSIQFNTDTNNDFEAGQNTKFTPDGVVQDG NGTHQNEPQQWVLPSYSGRTGHNVHLAPAIAPTFPGEQLLFFRSTMPGCSGYPNMNLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6687..7493 /codon_start=1 /product="minor structural protein" /protein_id="AFU55687.1" /translation="MAGAFFAGLASDVLGSGLGSLISAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMEVKRAMLLEGGFSETDASRGAIN APMTKALDWSGTRYWAPDARVTTYNAGRFSTPQPSGALPGRTNPRATVPARGFSNAPS NTSTATSVYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWIEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" 3'UTR 7494..>7515 ORIGIN 1 acgacgcttc cgctgccgct gttgctaaca gcaacgacga caccgcaaaa tcttcaagtg 61 acggagtgct ttctagcatg gctgtcactt ttaaacgagc cctcggggcg cggtctaaac 121 agcccccccc gagggaaata ccacaaagac ccccacgacc acctactcca gaactggtca 181 aaaagatccc tcctcccccg cccaacggag aggatgaaat agtgatttct tatagtgtca 241 aagatggcgt ttccggtttg cctgagcttt ctaccgttag gcaaccggaa gaagctaata 301 cggccttcag tgtccccccg ctcaatcaga gggagaatag ggatgctaag gagccactga 361 ctggaacaat tctggagatg tgggatgggg agatctacca ttacggcctg tatgtggacc 421 gaggtcttgt actaggtgtg cacaaaccac cagctgccat tagcctcgcc aaggtcgaac 481 taacaccact ctccttgttc tggagacctg tgtatactcc tcagtacctc atctctccag 541 acactctcaa gaaattgcac ggagaaacgt tcccttacac agcctttgac aacaattgct 601 atgccttttg ctgctgggtc ctggacctga acgactcgtg gctgagtagg agaatgatcc 661 agagaacaac tggcttcttc agaccctacc aggattggaa taggaaaccc ctccccactg 721 tggatgattc caagttaaag aaggtagcta atatattcct gtgtgctctg tcttcgctgt 781 tcaccaggcc cataaaagac ataataggga agctaaagcc tcttaacatc ctcaacatct 841 tggcctcatg tgattggact ttcgcaggca tagtggagtc cttgatactc ctggcagagc 901 tctttggagt cttctggaca cccccagatg tgtctgcgat gattgccccc ttactcggtg 961 actacgagtt acaaggaccc gaggaccttg cagtggaact cgtccctgta gtgatggggg 1021 gaattggttt ggtgctggga ttcaccaaag agaagattgg aaaaatgttg tcatctgctg 1081 cgtccacctt gagagcttgc aaagatcttg gtgcatatgg gctagagatc ttaaagttgg 1141 tcatgaagtg gttcttcccg aagaaagagg aagctaatga actggctatg gtaagatcca 1201 tcgaggatgc ggtgctggac ctcgaggcaa ttgaaaacaa ccatatgacc accttgctca 1261 aagacaaaga cagtctggca acctacatga gaacccttga ccttgaggag gagaaagcca 1321 gaaaactctc aaccaagtct gcttcacctg acatcgtggg cacaatcaac gcccttctgg 1381 cgagaatcgc tgctgcacgt tccctggtgc atcgagcgaa ggaggagctt tccagcagac 1441 caagacctgt agtcttgatg atatcaggca gaccaggaat agggaagacc cacctcgcta 1501 gggaagtggc taagagaatc gcagcctccc tcacaggaga ccagcgtgta ggcctcatcc 1561 cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga gagggtcgtc ctatgggacg 1621 actatggaat gagcaatccc atccacgacg ccctcaggtt gcaagaactc gctgacactt 1681 gccccctcac tctaaactgt gacaggattg agaataaagg aaaggtcttt gacagcgatg 1741 tcatcattat cactactaac ctggccaacc cagcaccact ggactatgtc aactttgaag 1801 catgctcgag gcgcatcgat ttcctcgtgt atgcagaagc ccctgaagtc gaaaaggcga 1861 agcgtgactt cccaggccaa cctgacatgt ggaagaacgc ctttagttct gatttttcac 1921 acataaaact agcactggct ccacagggtg gcttcgataa aaacgggaac accccgcacg 1981 ggaagggcgt catgaagact ctcaccactg gctcccttat tgcccgggca tcagggctac 2041 tccatgagag gctagatgag tttgaactac agggcccagc tctcaccacc ttcaactttg 2101 accgcaacaa agtgcttgcc tttaggcaac ttgctgccga aaacaaatat gggttgatgg 2161 acacaatgag agttgggagg caactcaagg atgtcagaac catgccagag ctcaaacaag 2221 cactcaagaa tatctcaatc aagaagtgcc agatagtgta cagtggttgc acctacacac 2281 ttgagtctga cggcaagggc aacgtgaaag ttgacagagt tcagagcacc tccgtgcaga 2341 ccagcaacga gctgactggc gccctgcacc acctaaggtg tgccagaatc aggtactatg 2401 tcaggtgtgt ccaggaggcc ctgtattcca tcatccagat tgctggggct gcatttgtca 2461 ccacgcgcat cgtcaagcgc atgaacatac aagacctgtg gtccaaacca caagtggaaa 2521 acacagagga ggttaccaac aaggacgggt gcccaaaacc caaagatgat gaggagttcg 2581 tcatttcatc cgacgacatt aaaactgagg gtaagaaagg gaagaacaag actggtcgcg 2641 gcaagaagca cacagccttc tcaagcaaag gtctcagtga tgaggagtat gatgagtaca 2701 agaggattag agaagagagg aatggcaagt attccataga agagtacctc caggacaggg 2761 acaaatacta tgaggaggtg gccattgcca gggcgaccga ggaagacttc tgtgaagagg 2821 aggaggccaa gatccggcaa aggatcttta ggccaacaag aaaacaacgc aaggaggaaa 2881 gagcttctct cggtttagtc acaggttctg aaattaggaa aagaaaccca gatgatttca 2941 agcccaaggg gaaactgtgg gctgacgatg acagaagtgt ggactacaat gagaaactca 3001 gctttgaggc cccaccaagc atctggtcga ggatagtcaa ctttggttcg ggttggggct 3061 tctgggtctc ccccagtctg ttcataacat caacccatgt cataccccag ggcgcaaagg 3121 agttcttcgg agtccctatc aaacaaattc aggtacacaa atcaggcgaa ttctgtcgct 3181 tgagattccc aaaaccaatc aggactgatg tgacgggtat gatcttagaa gaaggtgcgc 3241 ccgaaggcac cgtggtcaca ctactcataa aaaggtccac aggagaactc atgcccttag 3301 cagctagaat ggggacccat gcaaccatga aaattcaagg gcgcactgtt ggaggtcaga 3361 tgggcatgct tctgacagga tctaacgcta aaagcatgga cctaggcacc acaccaggtg 3421 attgcggctg tccctacatc tacaagagag gaaatgacta tgtggtcatt ggagtccaca 3481 cggctgctgc tcgcggggga aatactgtca tatgtgccac ccaggggagt gagggggagg 3541 ccacacttga aggtggtgac agcaagggaa catactgtgg tgcaccaatc ctaggcccag 3601 ggagtgcccc aaaacttagc accaaaacca aattctggag gtcgtccaca gcaccactcc 3661 cacctggcac ctatgaacca gcctatcttg gtggcaagga ccccagggtc aagggtggcc 3721 cttcattgca gcaagtcatg agggatcagt tgaaaccatt tacagagccc aggggaaagc 3781 caccaaagcc aagtgtgtta gaagctgcca agaaaaccat catcaatgtc cttgagcaaa 3841 caattgatcc acctgagaaa tggtcattcg cacaagcttg cgcgtccctc gacaagacca 3901 cttccagtgg ccatccgcac cacatgcgga aaaacgactg ctggaacggg gaatccttca 3961 caggcaagct ggcagatcag gcttccaagg ccaacctgat gttcgaagaa gggaagaaca 4021 tgaccccagt ctacacgggt gcgcttaagg atgaattggt caaaactgac aaaatttatg 4081 gtaagatcaa gaagaggctt ctctggggtt cggatctagc gaccatgatc cgatgtgctc 4141 gagcattcgg aggtctaatg gatgaactca aagcacactg tgttacactt cctatcagag 4201 ttggtatgaa tatgaatgag gacggcccca tcatattcga gaggcattcc aggtacagat 4261 atcactatga tgctgattac tctcggtggg attcaacaca acagagagcc gtgttggcag 4321 cagctctaga aatcatggtt aaattctcct cagaaccaca tttggctcag gtagtcgcag 4381 aagaccttct ttctcctagc gtggtggatg tgggtgactt cacaatatca atcaacgagg 4441 gtctcccctc tggggtaccc tgcacctccc aatggaactc catcgcccac tggcttctca 4501 ctctctgtgc gctctctgaa gtcacaaatc tgtcccctga catcatacag gctaactccc 4561 tcttctcctt ttatggtgat gatgaaatcg ttagcacaga cataaaattg gacccagaga 4621 agttgacagc aaagctcagg gaatatgggc tgaaaccaac ccgccctgac aaaactgaag 4681 ggccccttgt tatctctgaa gacttgaatg gtctgacttt cctgcggaga actgtgaccc 4741 gcgacccagc tggttggttt ggaaaactgg agcagagttc aatactcagg caaatgtact 4801 ggactagggg ccccaaccat gaagacccat ctgaaacaat gattccacac tcccaaagac 4861 ccatacagtt gatgtcctta ctgggagagg ccgcactcca cggcccaaca ttctacagca 4921 aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg catggatttt tacgtgccca 4981 ggcaagagcc aatgttcaga tggatgagat tctcagatct gagcacgtgg gagggcgatc 5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga atgacgccaa cccatctgat 5101 gggtccacag ccaacctcgt cccagaggtc aacaatgagg ttatggcttt ggagcccgtt 5161 gttggtgccg ctattgcggc acctgtggcg ggccaacaaa atgtaattga cccctggatt 5221 agaaataatt ttgtacaggc ccctggtgga gagtttacag tatcccctag aaacgctcca 5281 ggtgaaatac tatggagcgc gcccttgggc cctgatctga atccctacct ttctcatttg 5341 gccagaatgt acaatggcta tgcaggtggc tttgaagtgc aggtaatcct tgcggggaat 5401 gcgttcaccg ccgggaaaat catatttgca gcagtcccac caaatttccc aactgaaggc 5461 ttgagcccca gccaggtcac tatgttcccc catataatag tagatgttag gcaactggaa 5521 cctgtgttga tccccttacc tgatgttagg aacaatttct atcactacaa ccagtcaaat 5581 gaccccacca ttaaattgat agcaatgctg tacacaccac ttagggctaa taatgctggg 5641 gaagatgtct tcacagtctc ttgtcgagtc ctcacgaggc catcccctga ttttgatttt 5701 atatttttgg tgccacccac agttgagtca agaactaaac cattcaccgt cccaatttta 5761 actgttgagg aaatgaccaa ttcaagattc cctattcctt tggaaaagtt gttcacgggt 5821 cctagcggtg cctttgttgt tcaaccacaa aatggcaggt gcacgactga tggcgtactc 5881 ttaggcacca cccaactgtc tcctgtcaac atctgcacct tcagagggga tgtcacccac 5941 attgcaggta ctcataatta cacaatgaat ttggcttctc aaaattggaa caattatgac 6001 ccaacagaag aaatcccagc ccctctgggg accccagatt tcgtgggaag gatccaaggc 6061 atgctcaccc aaactacaag gggagatggc tctacccgcg gccacaaagc tacagtgagc 6121 actggggatg tccacttcac tccaaagctg ggcagtattc aattcaacac tgatacaaac 6181 aatgattttg aagctggcca aaacacgaaa ttcaccccag acggtgttgt ccaggatggt 6241 aatggtaccc accaaaatga accccaacaa tgggtgctcc caagctactc aggtagaact 6301 ggtcataatg tacacctagc ccccgccata gcccccactt ttccgggtga gcaacttctt 6361 ttcttcaggt ccactatgcc cggatgcagc gggtacccca acatgaattt ggattgtcta 6421 ctcccccaag aatgggtgca gcacttctac caagaggcgg ctccagcaca atctgatgtg 6481 gctctgctaa gatttgtgaa tccagacacg ggtagggttc tatttgagtg caagcttcat 6541 aaatcaggct atgtcacagt ggctcacact ggccagcatg atttggttat cccccccaat 6601 ggctacttta gatttgattc ctgggtcaac caattctaca cacttgcccc catgggaaat 6661 gggacggggc gtagacgtgc attataatgg ctggagcttt cttcgccggg ctggcatctg 6721 atgtccttgg ctctggactt ggttccctaa tcagtgctgg ggctggggcc atcaaccaaa 6781 aagttgaatt tgaaaataac agaaaactgc aacaagcttc cttccaattt agtagcaatc 6841 tacaacaggc ttcctttcaa catgataaag agatgctcca agcacaaatt gaggccacta 6901 aaaagttgca acagggtatg atggaagtta aacgggcaat gctcctagag ggtggattct 6961 ctgaaacaga tgcatcccgt ggggcaatca acgcccccat gactaaggct ttggactgga 7021 gcggaacaag gtactgggct cctgatgcta gggttacaac atacaatgca ggccgctttt 7081 ccacccctca accctcgggg gcactgccag gaaggaccaa tcccagggct actgtccccg 7141 ctcggggctt ctccaatgca ccttctaata cttctactgc tacttctgtg tattcaaatc 7201 aaactgtttc aacgagactt ggttctacag ctggttctgg caccagtgtc tcgagtctcc 7261 cgtcaactgc aaggactagg agctggattg aggatcaaaa caggaatttg tcacctttca 7321 tgaggggagc tcacaacata tcgtttgtca ccccaccatc tagcagatcc tctagccaag 7381 gcacagtctc aaccgtgcct aaagaagttt tggactcctg gactggcgct ttcaacacgc 7441 gcaggcagcc tctcttcgcc cacattcgta agcgagggga gtcacgggcg taatgtgaaa 7501 agacaaaatt gatta //