Typing tool
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Typing tool
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Complete norovirus genomes
| JX445152 | GII.4 Farmington Hills | |
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| GII.P4 Farmington Hills |
ORF1: 1..5084
ORF2: 5065..6687
ORF3: 6687..7493
LOCUS JX445152 7515 bp RNA linear VRL 10-OCT-2012
DEFINITION Norovirus Hu/GII.4/AlbertaEI131/2004/CA non-structural polyprotein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION JX445152
VERSION JX445152.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/AlbertaEI131/2004/CA
ORGANISM Norovirus Hu/GII.4/AlbertaEI131/2004/CA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7515)
AUTHORS Hasing,M.E., Lee,B.E., Preiksaitis,J.K., Tyrrell,G.J., Louie,M. and
Pang,X.L.
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2012) Provincial Laboratory for Public Health
(ProvLab), 8440-112 Street, Edmonton, Alberta T6G 2J2, Canada
FEATURES Location/Qualifiers
source 1..7515
/organism="Norovirus Hu/GII.4/AlbertaEI131/2004/CA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/AlbertaEI131/2004/CA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1238274"
/geo_loc_name="Canada"
/collection_date="Jul-2004"
/note="genotype: GII.4"
CDS <1..5084
/codon_start=3
/product="non-structural polyprotein"
/protein_id="AFU55685.1"
/translation="DASAAAVANSNDDTAKSSSDGVLSSMAVTFKRALGARSKQPPPR
EIPQRPPRPPTPELVKKIPPPPPNGEDEIVISYSVKDGVSGLPELSTVRQPEEANTAF
SVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVDRGLVLGVHKPPAAISLAKVEL
TPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRM
IQRTTGFFRPYQDWNRKPLPTVDDSKLKKVANIFLCALSSLFTRPIKDIIGKLKPLNI
LNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELV
PVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN
ELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPD
IVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKRIAA
SLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC
DRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP
GQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHE
RLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTMPELKQA
LKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTSNELTGALHHLRCARIRY
YVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEEVTNKDGCPKPKDD
EEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIR
KRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFITS
THVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLL
IKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI
YKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPK
LSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPK
PSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFT
GKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRC
ARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYRYHYDADYSRWDSTQQRA
VLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKP
TRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPS
ETMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5065..6687
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AFU55686.1"
/translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGRIQGML
TQTTRGDGSTRGHKATVSTGDVHFTPKLGSIQFNTDTNNDFEAGQNTKFTPDGVVQDG
NGTHQNEPQQWVLPSYSGRTGHNVHLAPAIAPTFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6687..7493
/codon_start=1
/product="minor structural protein"
/protein_id="AFU55687.1"
/translation="MAGAFFAGLASDVLGSGLGSLISAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMEVKRAMLLEGGFSETDASRGAIN
APMTKALDWSGTRYWAPDARVTTYNAGRFSTPQPSGALPGRTNPRATVPARGFSNAPS
NTSTATSVYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWIEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
3'UTR 7494..>7515
ORIGIN
1 acgacgcttc cgctgccgct gttgctaaca gcaacgacga caccgcaaaa tcttcaagtg
61 acggagtgct ttctagcatg gctgtcactt ttaaacgagc cctcggggcg cggtctaaac
121 agcccccccc gagggaaata ccacaaagac ccccacgacc acctactcca gaactggtca
181 aaaagatccc tcctcccccg cccaacggag aggatgaaat agtgatttct tatagtgtca
241 aagatggcgt ttccggtttg cctgagcttt ctaccgttag gcaaccggaa gaagctaata
301 cggccttcag tgtccccccg ctcaatcaga gggagaatag ggatgctaag gagccactga
361 ctggaacaat tctggagatg tgggatgggg agatctacca ttacggcctg tatgtggacc
421 gaggtcttgt actaggtgtg cacaaaccac cagctgccat tagcctcgcc aaggtcgaac
481 taacaccact ctccttgttc tggagacctg tgtatactcc tcagtacctc atctctccag
541 acactctcaa gaaattgcac ggagaaacgt tcccttacac agcctttgac aacaattgct
601 atgccttttg ctgctgggtc ctggacctga acgactcgtg gctgagtagg agaatgatcc
661 agagaacaac tggcttcttc agaccctacc aggattggaa taggaaaccc ctccccactg
721 tggatgattc caagttaaag aaggtagcta atatattcct gtgtgctctg tcttcgctgt
781 tcaccaggcc cataaaagac ataataggga agctaaagcc tcttaacatc ctcaacatct
841 tggcctcatg tgattggact ttcgcaggca tagtggagtc cttgatactc ctggcagagc
901 tctttggagt cttctggaca cccccagatg tgtctgcgat gattgccccc ttactcggtg
961 actacgagtt acaaggaccc gaggaccttg cagtggaact cgtccctgta gtgatggggg
1021 gaattggttt ggtgctggga ttcaccaaag agaagattgg aaaaatgttg tcatctgctg
1081 cgtccacctt gagagcttgc aaagatcttg gtgcatatgg gctagagatc ttaaagttgg
1141 tcatgaagtg gttcttcccg aagaaagagg aagctaatga actggctatg gtaagatcca
1201 tcgaggatgc ggtgctggac ctcgaggcaa ttgaaaacaa ccatatgacc accttgctca
1261 aagacaaaga cagtctggca acctacatga gaacccttga ccttgaggag gagaaagcca
1321 gaaaactctc aaccaagtct gcttcacctg acatcgtggg cacaatcaac gcccttctgg
1381 cgagaatcgc tgctgcacgt tccctggtgc atcgagcgaa ggaggagctt tccagcagac
1441 caagacctgt agtcttgatg atatcaggca gaccaggaat agggaagacc cacctcgcta
1501 gggaagtggc taagagaatc gcagcctccc tcacaggaga ccagcgtgta ggcctcatcc
1561 cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga gagggtcgtc ctatgggacg
1621 actatggaat gagcaatccc atccacgacg ccctcaggtt gcaagaactc gctgacactt
1681 gccccctcac tctaaactgt gacaggattg agaataaagg aaaggtcttt gacagcgatg
1741 tcatcattat cactactaac ctggccaacc cagcaccact ggactatgtc aactttgaag
1801 catgctcgag gcgcatcgat ttcctcgtgt atgcagaagc ccctgaagtc gaaaaggcga
1861 agcgtgactt cccaggccaa cctgacatgt ggaagaacgc ctttagttct gatttttcac
1921 acataaaact agcactggct ccacagggtg gcttcgataa aaacgggaac accccgcacg
1981 ggaagggcgt catgaagact ctcaccactg gctcccttat tgcccgggca tcagggctac
2041 tccatgagag gctagatgag tttgaactac agggcccagc tctcaccacc ttcaactttg
2101 accgcaacaa agtgcttgcc tttaggcaac ttgctgccga aaacaaatat gggttgatgg
2161 acacaatgag agttgggagg caactcaagg atgtcagaac catgccagag ctcaaacaag
2221 cactcaagaa tatctcaatc aagaagtgcc agatagtgta cagtggttgc acctacacac
2281 ttgagtctga cggcaagggc aacgtgaaag ttgacagagt tcagagcacc tccgtgcaga
2341 ccagcaacga gctgactggc gccctgcacc acctaaggtg tgccagaatc aggtactatg
2401 tcaggtgtgt ccaggaggcc ctgtattcca tcatccagat tgctggggct gcatttgtca
2461 ccacgcgcat cgtcaagcgc atgaacatac aagacctgtg gtccaaacca caagtggaaa
2521 acacagagga ggttaccaac aaggacgggt gcccaaaacc caaagatgat gaggagttcg
2581 tcatttcatc cgacgacatt aaaactgagg gtaagaaagg gaagaacaag actggtcgcg
2641 gcaagaagca cacagccttc tcaagcaaag gtctcagtga tgaggagtat gatgagtaca
2701 agaggattag agaagagagg aatggcaagt attccataga agagtacctc caggacaggg
2761 acaaatacta tgaggaggtg gccattgcca gggcgaccga ggaagacttc tgtgaagagg
2821 aggaggccaa gatccggcaa aggatcttta ggccaacaag aaaacaacgc aaggaggaaa
2881 gagcttctct cggtttagtc acaggttctg aaattaggaa aagaaaccca gatgatttca
2941 agcccaaggg gaaactgtgg gctgacgatg acagaagtgt ggactacaat gagaaactca
3001 gctttgaggc cccaccaagc atctggtcga ggatagtcaa ctttggttcg ggttggggct
3061 tctgggtctc ccccagtctg ttcataacat caacccatgt cataccccag ggcgcaaagg
3121 agttcttcgg agtccctatc aaacaaattc aggtacacaa atcaggcgaa ttctgtcgct
3181 tgagattccc aaaaccaatc aggactgatg tgacgggtat gatcttagaa gaaggtgcgc
3241 ccgaaggcac cgtggtcaca ctactcataa aaaggtccac aggagaactc atgcccttag
3301 cagctagaat ggggacccat gcaaccatga aaattcaagg gcgcactgtt ggaggtcaga
3361 tgggcatgct tctgacagga tctaacgcta aaagcatgga cctaggcacc acaccaggtg
3421 attgcggctg tccctacatc tacaagagag gaaatgacta tgtggtcatt ggagtccaca
3481 cggctgctgc tcgcggggga aatactgtca tatgtgccac ccaggggagt gagggggagg
3541 ccacacttga aggtggtgac agcaagggaa catactgtgg tgcaccaatc ctaggcccag
3601 ggagtgcccc aaaacttagc accaaaacca aattctggag gtcgtccaca gcaccactcc
3661 cacctggcac ctatgaacca gcctatcttg gtggcaagga ccccagggtc aagggtggcc
3721 cttcattgca gcaagtcatg agggatcagt tgaaaccatt tacagagccc aggggaaagc
3781 caccaaagcc aagtgtgtta gaagctgcca agaaaaccat catcaatgtc cttgagcaaa
3841 caattgatcc acctgagaaa tggtcattcg cacaagcttg cgcgtccctc gacaagacca
3901 cttccagtgg ccatccgcac cacatgcgga aaaacgactg ctggaacggg gaatccttca
3961 caggcaagct ggcagatcag gcttccaagg ccaacctgat gttcgaagaa gggaagaaca
4021 tgaccccagt ctacacgggt gcgcttaagg atgaattggt caaaactgac aaaatttatg
4081 gtaagatcaa gaagaggctt ctctggggtt cggatctagc gaccatgatc cgatgtgctc
4141 gagcattcgg aggtctaatg gatgaactca aagcacactg tgttacactt cctatcagag
4201 ttggtatgaa tatgaatgag gacggcccca tcatattcga gaggcattcc aggtacagat
4261 atcactatga tgctgattac tctcggtggg attcaacaca acagagagcc gtgttggcag
4321 cagctctaga aatcatggtt aaattctcct cagaaccaca tttggctcag gtagtcgcag
4381 aagaccttct ttctcctagc gtggtggatg tgggtgactt cacaatatca atcaacgagg
4441 gtctcccctc tggggtaccc tgcacctccc aatggaactc catcgcccac tggcttctca
4501 ctctctgtgc gctctctgaa gtcacaaatc tgtcccctga catcatacag gctaactccc
4561 tcttctcctt ttatggtgat gatgaaatcg ttagcacaga cataaaattg gacccagaga
4621 agttgacagc aaagctcagg gaatatgggc tgaaaccaac ccgccctgac aaaactgaag
4681 ggccccttgt tatctctgaa gacttgaatg gtctgacttt cctgcggaga actgtgaccc
4741 gcgacccagc tggttggttt ggaaaactgg agcagagttc aatactcagg caaatgtact
4801 ggactagggg ccccaaccat gaagacccat ctgaaacaat gattccacac tcccaaagac
4861 ccatacagtt gatgtcctta ctgggagagg ccgcactcca cggcccaaca ttctacagca
4921 aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg catggatttt tacgtgccca
4981 ggcaagagcc aatgttcaga tggatgagat tctcagatct gagcacgtgg gagggcgatc
5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga atgacgccaa cccatctgat
5101 gggtccacag ccaacctcgt cccagaggtc aacaatgagg ttatggcttt ggagcccgtt
5161 gttggtgccg ctattgcggc acctgtggcg ggccaacaaa atgtaattga cccctggatt
5221 agaaataatt ttgtacaggc ccctggtgga gagtttacag tatcccctag aaacgctcca
5281 ggtgaaatac tatggagcgc gcccttgggc cctgatctga atccctacct ttctcatttg
5341 gccagaatgt acaatggcta tgcaggtggc tttgaagtgc aggtaatcct tgcggggaat
5401 gcgttcaccg ccgggaaaat catatttgca gcagtcccac caaatttccc aactgaaggc
5461 ttgagcccca gccaggtcac tatgttcccc catataatag tagatgttag gcaactggaa
5521 cctgtgttga tccccttacc tgatgttagg aacaatttct atcactacaa ccagtcaaat
5581 gaccccacca ttaaattgat agcaatgctg tacacaccac ttagggctaa taatgctggg
5641 gaagatgtct tcacagtctc ttgtcgagtc ctcacgaggc catcccctga ttttgatttt
5701 atatttttgg tgccacccac agttgagtca agaactaaac cattcaccgt cccaatttta
5761 actgttgagg aaatgaccaa ttcaagattc cctattcctt tggaaaagtt gttcacgggt
5821 cctagcggtg cctttgttgt tcaaccacaa aatggcaggt gcacgactga tggcgtactc
5881 ttaggcacca cccaactgtc tcctgtcaac atctgcacct tcagagggga tgtcacccac
5941 attgcaggta ctcataatta cacaatgaat ttggcttctc aaaattggaa caattatgac
6001 ccaacagaag aaatcccagc ccctctgggg accccagatt tcgtgggaag gatccaaggc
6061 atgctcaccc aaactacaag gggagatggc tctacccgcg gccacaaagc tacagtgagc
6121 actggggatg tccacttcac tccaaagctg ggcagtattc aattcaacac tgatacaaac
6181 aatgattttg aagctggcca aaacacgaaa ttcaccccag acggtgttgt ccaggatggt
6241 aatggtaccc accaaaatga accccaacaa tgggtgctcc caagctactc aggtagaact
6301 ggtcataatg tacacctagc ccccgccata gcccccactt ttccgggtga gcaacttctt
6361 ttcttcaggt ccactatgcc cggatgcagc gggtacccca acatgaattt ggattgtcta
6421 ctcccccaag aatgggtgca gcacttctac caagaggcgg ctccagcaca atctgatgtg
6481 gctctgctaa gatttgtgaa tccagacacg ggtagggttc tatttgagtg caagcttcat
6541 aaatcaggct atgtcacagt ggctcacact ggccagcatg atttggttat cccccccaat
6601 ggctacttta gatttgattc ctgggtcaac caattctaca cacttgcccc catgggaaat
6661 gggacggggc gtagacgtgc attataatgg ctggagcttt cttcgccggg ctggcatctg
6721 atgtccttgg ctctggactt ggttccctaa tcagtgctgg ggctggggcc atcaaccaaa
6781 aagttgaatt tgaaaataac agaaaactgc aacaagcttc cttccaattt agtagcaatc
6841 tacaacaggc ttcctttcaa catgataaag agatgctcca agcacaaatt gaggccacta
6901 aaaagttgca acagggtatg atggaagtta aacgggcaat gctcctagag ggtggattct
6961 ctgaaacaga tgcatcccgt ggggcaatca acgcccccat gactaaggct ttggactgga
7021 gcggaacaag gtactgggct cctgatgcta gggttacaac atacaatgca ggccgctttt
7081 ccacccctca accctcgggg gcactgccag gaaggaccaa tcccagggct actgtccccg
7141 ctcggggctt ctccaatgca ccttctaata cttctactgc tacttctgtg tattcaaatc
7201 aaactgtttc aacgagactt ggttctacag ctggttctgg caccagtgtc tcgagtctcc
7261 cgtcaactgc aaggactagg agctggattg aggatcaaaa caggaatttg tcacctttca
7321 tgaggggagc tcacaacata tcgtttgtca ccccaccatc tagcagatcc tctagccaag
7381 gcacagtctc aaccgtgcct aaagaagttt tggactcctg gactggcgct ttcaacacgc
7441 gcaggcagcc tctcttcgcc cacattcgta agcgagggga gtcacgggcg taatgtgaaa
7501 agacaaaatt gatta
//