Typing tool
|
Complete norovirus genomes
JX439844 | GII.4 Den Haag | ||
---|---|---|---|
GII.P4 Den Haag |
ORF1: 1..810 ORF2: 791..2413 ORF3: 2413..2757LOCUS JX439844 2757 bp RNA linear VRL 31-JUL-2013 DEFINITION Norovirus Hu/GII/Seoul1450/KOR/2011 nonstructural protein gene, partial cds; major capsid protein gene, complete cds; and minor capsid protein gene, partial cds. ACCESSION JX439844 VERSION JX439844.1 KEYWORDS . SOURCE Norovirus Hu/GII/Seoul1450/KOR/2011 ORGANISM Norovirus Hu/GII/Seoul1450/KOR/2011 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 2757) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE The recombinant origin of emerging humannorovirus GII.4/2008 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2757) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE Direct Submission JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory Medicine, Sanggye Paik Hospital, Inje University College of Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of Korea (South Korea) COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2757 /organism="Norovirus Hu/GII/Seoul1450/KOR/2011" /mol_type="genomic RNA" /isolate="Hu/GII/Seoul1450/KOR/2011" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1336121" /country="South Korea" /collection_date="03-Jan-2011" /note="genotype: GII" CDS <1..810 /codon_start=1 /product="nonstructural protein" /protein_id="AGM46430.1" /translation="DYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVV DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGD DEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAG WFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYNKIS KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGARNLAPSFVNEDGVE" CDS 791..2413 /codon_start=1 /product="major capsid protein" /protein_id="AGM46431.1" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRDVPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2413..>2757 /codon_start=1 /product="minor capsid protein" /protein_id="AGM46432.1" /translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTR" ORIGIN 1 gattactctc ggtgggattc aacacaacag agagccgtgc tggcagctgc tctagaaatc 61 atggttaaat tctcctcaga accacatttg gctcaggtag tagcagaaga ccttctttct 121 cccagcgtgg tggacgtggg ggacttcaca atatcaatca acgagggtct tccctctggg 181 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcactct ctgtgcactc 241 tctgaagtta caaatttgtc cccagacatc atacaggcta attctctctt ctccttctac 301 ggtgatgatg aaattgttag tacagacata aaattagacc cagagaagtt gacagcaaag 361 cttaaggaat acgggttgaa accaacccgc cctgataaaa ctgaaggacc tcttgttatt 421 tctgaagact tagatggctt gaccttcctg cggagaactg tgacccgcga cccagctggt 481 tggtttggaa aactggagca gagctcaata ctcaggcaaa tgtactggac taggggccct 541 aaccatgaag atccatctga atcaatgatt ccacactctc aaagacccat acaattgatg 601 tccttactgg gagaggccgc actccacggc ccaacattct acaataaaat cagcaaatta 661 gtcattgcag agttaaaaga aggtggtatg gatttttacg tgcccaggca agagccaatg 721 ttcagatgga tgagattctc agatctgagc acgtgggagg gcgcgcgcaa tctggctccc 781 agttttgtga atgaagatgg cgtcgaatga cgccaaccca tctgatgggt ccgcagccaa 841 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgtcg gtgccgctat 901 tgcggcgcct gtagcgggcc aacaaaatgt aattgacccc tggattagaa ataattttgt 961 acaagcccct ggtggagagt tcacagtatc ccctagaaac gctccaggtg aaatactatg 1021 gagcgcaccc ttaggccctg atctgaatcc ctacctatct catttggcca gaatgtataa 1081 tggttatgca ggtggttttg aagtgcaggt aatcctcgcg gggaacgcgt tcaccgccgg 1141 aaaaattata tttgcagcag tcccaccaaa tttcccgact gaaggcttga gtcccagcca 1201 ggtcactatg ttcccccaca taatagtgga tgttaggcaa ttggaacctg tgttgatccc 1261 cctacctgat gttaggaata acttctatca ttataatcaa tcaaatgatt ctaccattaa 1321 attgatagcc atgctgtata caccacttag ggctaataat gctggggaag atgtcttcac 1381 agtctcttgt cgagtcctca cgaggccatc ccctgatttt gattttatat ttttggtgcc 1441 acctacagtt gagtcaagaa ctaaaccatt tactgtccca atcttgactg ttgaggaaat 1501 gaccaattca agattcccta ttcctttgga aaagttgttc acgggtccca gcagtgcctt 1561 tgttgttcaa ccacaaaatg gcagatgcac gactgatggc gtgctcttag gcaccaccca 1621 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccacattg caggttctcg 1681 taattacaca atgaatttgg cttctctaaa ttggaacaat tatgacccaa cagaagaaat 1741 tccagcccct ctaggaactc cagatttcgt gggaaagatt caaggtgtgc tcactcaaac 1801 cacaaaggga gatggttcga cccgtggcca taaagctaca gtttacactg ggagtgcccc 1861 ctttactcca aagctgggca gtgttcaatt cagtactgat acagaaaatg attttgaaac 1921 tcaccaaaac acaaaattca ccccagtcgg tgtcatccag gatggtggca ccacccaccg 1981 aaatgaaccc caacaatggg tgctcccaag ttattcaggt agagatgtcc ctaatgtaca 2041 cctagcccct gctgtagccc ccactttccc gggtgaacaa cttcttttct ttaggtctac 2101 tatgcccgga tgcagcgggt atcccaacat ggatttggat tgcctactcc cccaggagtg 2161 ggtgcagcac ttctaccaag aggcagctcc agcacaatct gatgtggctc tattgagatt 2221 tgtgaatcca gacacgggta gggtcctgtt tgagtgcaaa cttcataaat caggctatgt 2281 cacagtggct cacaccggcc agcatgattt agtcatcccc cccaatggtt attttaggtt 2341 tgattcctgg gttaatcaat tctacacact tgcccccatg ggaaatggaa cggggcgtag 2401 acgtgcttta taatggctgg agctttcttt gctggattgg catctgatgt ccttagctct 2461 ggacttggtt ccctaatcaa tgctggggct ggggctatca accaaaagat tgattttgaa 2521 aataacagaa aattgcagca agcttccttc cagtttagca gtaatctaca acaggcttcc 2581 tttcaacatg ataaagagat gctccaagca caaattgagg ccactaaaaa gttgcaacag 2641 gaaatgatga aagtcaaaca ggcaatgctc ttagaaggtg gattctctga aacagatgca 2701 gcccgtgggg caatcaacgc ccctatgaca aaggctttgg actggagcgg aacaagg //