Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| JX439842 | GII.4 Den Haag | |
|
|---|---|---|---|
| GII.P4 Den Haag |
ORF1: 1..810
ORF2: 791..2413
ORF3: 2413..2757
LOCUS JX439842 2757 bp RNA linear VRL 31-JUL-2013
DEFINITION Norovirus Hu/GII/Seoul1351/KOR/2010 nonstructural protein gene,
partial cds; major capsid protein gene, complete cds; and minor
capsid protein gene, partial cds.
ACCESSION JX439842
VERSION JX439842.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Seoul1351/KOR/2010
ORGANISM Norovirus Hu/GII/Seoul1351/KOR/2010
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 2757)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE The recombinant origin of emerging humannorovirus GII.4/2008
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2757)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory
Medicine, Sanggye Paik Hospital, Inje University College of
Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
Korea (South Korea)
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2757
/organism="Norovirus Hu/GII/Seoul1351/KOR/2010"
/mol_type="genomic RNA"
/isolate="Hu/GII/Seoul1351/KOR/2010"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1336099"
/country="South Korea"
/collection_date="09-Nov-2010"
/note="genotype: GII"
CDS <1..810
/codon_start=1
/product="nonstructural protein"
/protein_id="AGM46424.1"
/translation="DYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVV
DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGD
DEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAG
WFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALHGPAFYSKIS
KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEAGRNLAPSFVNEDGVE"
CDS 791..2413
/codon_start=1
/product="major capsid protein"
/protein_id="AGM46425.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRVYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKEDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNAPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2413..>2757
/codon_start=1
/product="minor capsid protein"
/protein_id="AGM46426.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSDLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSEIDAARGAIN
APMTKALDWSGTR"
ORIGIN
1 gattactctc ggtgggattc aacacaacag agagccgtgc tggcagccgc tctagaaatc
61 atggttaaat tctcctcaga accacatttg gctcaggtag tagcagaaga ccttctttct
121 cctagcgtgg tggatgtggg tgacttcaca atatcaatca acgagggtct tccctctggg
181 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcactct ctgtgcactc
241 tccgaagtta caaatttgtc cccagacatc atacaggcta attctctctt ctccttctat
301 ggtgatgatg aaattgttag tacagacata aaattagacc cagagaagtt gacagcaaag
361 cttaaggaat acgggttgaa accaacccgc cctgataaaa ctgaaggacc tcttgttatt
421 tctgaagact tagatggttt gactttcctg cggagaactg tgacccgcga cccagctggt
481 tggtttggaa aactggagca gagctcaata ctcaggcaaa tgtactggac taggggcccc
541 aaccatgaag atccatctga atcaatgatt ccacactctc aaagacccat acaattgatg
601 tctttactgg gagaggccgc actccacggc ccagcattct acagtaaaat cagcaaattg
661 gttattgcag agctaaaaga aggtggtatg gatttttacg tgcccaggca agagccaatg
721 ttcagatgga tgagattctc agatctgagc acgtgggagg ccggtcgcaa tctggctccc
781 agttttgtga atgaagatgg cgtcgagtga cgccaaccca tctgatgggt ccgcagccaa
841 cctcgtccca gaggtcaaca atgaggttat ggctttggaa cccgttgtcg gtgccgctat
901 tgcggcgcct gtagcgggcc aacaaaatgt aattgacccc tggattagaa ataattttgt
961 acaagcccct ggtggggagt ttacagtgtc ccctagaaac gctccaggcg aaatactatg
1021 gagcgcgccc ttaggccctg atctgaatcc ctacctatct catttggcca gaatgtataa
1081 tggttatgca ggtggttttg aagtgcaggt gatcctcgcg gggaacgcgt tcaccgccgg
1141 aaaaattata tttgcagcag tcccaccaaa ttttccaact gaaggcttga gtcccagcca
1201 ggtcactatg ttcccccaca taatagtgga tgttaggcaa ttggaacctg tgttgatccc
1261 cctacctgat gttaggaaca acttctatca ttataatcag tcaaatgatt ctaccattaa
1321 attgatagca atgctgtata cgccgcttag ggctaataac gctggggaag atgtctttac
1381 agtctcttgt cgagttctca cgaggccatc ccctgatttt gattttatat ttttagtgcc
1441 acctacagtc gagtcaagaa ctaaaccatt tactgtccca atcttaactg ttgaagaaat
1501 gaccaattca agattcccca ttcctttgga aaaattgttc acgggtccca gcagtgcctt
1561 tgttgttcaa ccacaaaatg gcagatgcac gactgatggc gtgctcttag gcaccaccca
1621 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccacattg caggttctcg
1681 tgtttacaca atgaatttgg cctctctaaa ttggaacaat tatgacccaa cagaagaaat
1741 tccagcccct ctaggaactc cagattttgt gggaaagatc caaggtgtgc tcactcaaac
1801 cacaaaggaa gacggctcga cccgtggcca taaagctaca gtttacactg ggagtgcccc
1861 ctttactcca aagctgggca gtgtccaatt cagtactgat acagagaatg attttgaaac
1921 tcaccaaaac acaaagttca ccccagtcgg tgtcatccag gatggtggca ccacccatcg
1981 aaatgaaccc caacaatggg tgctcccaag ttattcaggt agaaatgccc ctaatgtaca
2041 cctagcccct gctgtagccc ccacttttcc gggtgaacaa cttcttttct ttaggtccac
2101 tatgcccgga tgcagcgggt atcccaacat ggatttggac tgcctactcc cccaggagtg
2161 ggtgcagcac ttctaccaag aagcagctcc ggcacaatct gatgtggctc tattgagatt
2221 tgtgaaccca gacacgggta gggtcctgtt tgagtgcaaa cttcataaat caggctatgt
2281 cacagtggct cacaccggtc agcatgattt ggtcatcccc cccaatggtt attttaggtt
2341 tgattcctgg gttaatcaat tttacacact tgcccccatg ggaaatggaa cggggcgtag
2401 acgtgcttta taatggctgg agctttcttt gctggattgg catctgatgt ccttagctct
2461 ggacttggtt ccctaatcaa cgctggggct ggggctatca accaaaagat tgattttgaa
2521 aataacagaa aattgcagca agcttccttc cagtttagta gtgatctaca acaggcttcc
2581 tttcaacatg acaaagaaat gctccaagca caaattgagg ccaccaaaaa gttgcaacag
2641 gaaatgatga aagtcaagca ggcaatgctc ttagaaggtg gattctctga aatagatgca
2701 gcccgtggag caatcaacgc ccctatgaca aaggctttgg actggagcgg aacaagg
//