Typing tool
|
Complete norovirus genomes
JX439841 | GII.4 Den Haag | ||
---|---|---|---|
GII.P4 Den Haag |
ORF1: 1..810 ORF2: 791..2413 ORF3: 2413..2757LOCUS JX439841 2757 bp RNA linear VRL 31-JUL-2013 DEFINITION Norovirus Hu/GII/Seoul1321/KOR/2010 nonstructural protein gene, partial cds; major capsid protein gene, complete cds; and minor capsid protein gene, partial cds. ACCESSION JX439841 VERSION JX439841.1 KEYWORDS . SOURCE Norovirus Hu/GII/Seoul1321/KOR/2010 ORGANISM Norovirus Hu/GII/Seoul1321/KOR/2010 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 2757) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE The recombinant origin of emerging humannorovirus GII.4/2008 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2757) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE Direct Submission JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory Medicine, Sanggye Paik Hospital, Inje University College of Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of Korea (South Korea) COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2757 /organism="Norovirus Hu/GII/Seoul1321/KOR/2010" /mol_type="genomic RNA" /isolate="Hu/GII/Seoul1321/KOR/2010" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1336098" /country="South Korea" /collection_date="06-Oct-2010" /note="genotype: GII" CDS <1..810 /codon_start=1 /product="nonstructural protein" /protein_id="AGM46423.1" /translation="DYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVV DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGD DEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAG WFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALHGPAFYSKIS KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGGRNLAPSFVNEDGVE" CDS 791..2413 /codon_start=1 /product="major capsid protein" /protein_id="AGM46421.1" /translation="MKMASNDASPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRDYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGSTPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNVQNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2413..>2757 /codon_start=1 /product="minor capsid protein" /protein_id="AGM46422.1" /translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTR" ORIGIN 1 gattactctc ggtgggattc aacacaacag agagccgtgc tggcagccgc tctagaaatc 61 atggttaaat tctcctcaga accacatttg gctcaggtag tagcagaaga ccttctttct 121 cctagcgtgg tggatgtggg tgacttcaca atatcaatca acgagggtct tccctctggg 181 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcactct ctgtgcactc 241 tccgaagtta caaatttgtc cccagacatc atacaggcta attctctctt ctccttctat 301 ggtgatgatg aaattgttag tacagacata aaattagacc cagagaagtt gacagcaaag 361 cttaaggaat acgggttgaa accaacccgc cctgataaaa ctgaaggacc tcttgttatt 421 tctgaagact tagatggttt gactttcctg cggagaactg tgacccgcga cccagctggt 481 tggtttggaa aactggagca gagctcaata ctcaggcaaa tgtactggac taggggcccc 541 aaccatgaag atccatctga atcaatgatt ccacactctc aaagacccat acaattgatg 601 tctttactgg gagaggccgc actccacggc ccagcattct acagtaaaat cagcaaattg 661 gttattgcag agctaaaaga aggtggtatg gatttttacg tgcccaggca agagccaatg 721 ttcagatgga tgagattctc agatctgagc acgtgggagg gcggtcgcaa tctggctccc 781 agttttgtga atgaagatgg cgtcgaatga cgccagccca tctgatgggt ccgcagccaa 841 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgtcg gtgccgctat 901 tgcggcgcct gtagcgggcc aacaaaatgt aattgacccc tggattagaa acaattttgt 961 acaagcccct ggtggagagt tcacagtgtc ccctagaaac gctccaggtg aaatactatg 1021 gagcgcgccc ttaggccctg atctgaatcc ctacctatct catttggcca gaatgtataa 1081 tggttatgca ggtggcttcg aagtgcaggt gatcctcgcg gggaacgcgt tcaccgccgg 1141 gaaaattata tttgcagcag tcccaccaaa ttttccaact gaaggcttga gtcccagcca 1201 ggtcactatg ttcccccaca taatagtgga tgttaggcaa ttggaacctg tgttgatccc 1261 cttacctgat gttaggaata acttctatca ttataatcag tcaaatgatt ctaccattaa 1321 attgatagca atgctgtata caccacttag ggctaacaat gctggggaag atgtcttcac 1381 agtctcttgt cgagttctca caaggccatc ccctgatttt gattttatat ttttggtgcc 1441 acctacagtt gagtcaagaa ctaaaccatt tactgtccca atcttaactg ttgaagaaat 1501 gaccaattca agattcccca ttcctttgga aaaattgttc acgggaccca gcagtgcctt 1561 tgttgttcaa ccacaaaatg gcagatgcac gactgatggc gtgctcttag gcaccaccca 1621 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccacattg caggttctcg 1681 tgattacaca atgaatttgg cttctctaaa ttggaacaat tatgacccaa cagaagaaat 1741 tccagcccct ctaggaactc cagatttcgt gggaaagatc caaggtgtgc tcacccaaac 1801 cacaaaggga gatggctcga cccgtggcca taaagctaca gtttatactg ggagtacccc 1861 ctttactcca aagctgggca gtgtccaatt cagtactgat acagaaaatg attttgaaac 1921 tcaccaaaac acaaaattca ccccagtcgg tgtcatccag gatggtggca ccacccaccg 1981 aaatgaaccc caacaatggg tgctcccaag ttattcaggt agaaatgtcc agaatgtaca 2041 cctagcccct gctgtagccc ccacttttcc gggtgaacaa cttcttttct ttaggtccac 2101 tatgcccgga tgcagcgggt atcccaacat ggatttggat tgcctactcc cccaggagtg 2161 ggtgcagcac ttctaccaag aggcagctcc agcacaatct gatgtggctc tattgagatt 2221 tgtgaatcca gacacaggta gggtcctgtt tgagtgcaaa cttcataaat caggctatgt 2281 cacagtggct cacaccggcc agcatgattt ggtcatcccc cccaatggtt attttaggtt 2341 tgattcctgg gttaatcaat tctacacact tgcccccatg ggaaatggaa cggggcgtag 2401 gcgtgcttta taatggctgg agctttcttt gctggattgg catctgatgt cctcagctct 2461 ggacttggct ccctaatcaa tgctggggct ggggctatca accaaaagat tgattttgaa 2521 aataacagaa aattgcagca agcttccttc cagtttagca gtaatctaca acaggcttcc 2581 tttcaacatg ataaagagat gctccaagca caaattgagg ccactaaaaa gttgcaacag 2641 gaaatgatga aagtcaaaca ggcaatgctc ttagaaggtg gattctctga aacagatgca 2701 gcccgtgggg caatcaacgc ccctatgaca aaggctttgg actggagcgg aacaagg //