Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| JX439838 | GII.4 Den Haag | |
|
|---|---|---|---|
| GII.P4 Den Haag |
ORF1: 1..810
ORF2: 791..2413
ORF3: 2413..2757
LOCUS JX439838 2757 bp RNA linear VRL 31-JUL-2013
DEFINITION Norovirus Hu/GII/Seoul1073/KOR/2010 nonstructural protein gene,
partial cds; major capsid protein gene, complete cds; and minor
capsid protein gene, partial cds.
ACCESSION JX439838
VERSION JX439838.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Seoul1073/KOR/2010
ORGANISM Norovirus Hu/GII/Seoul1073/KOR/2010
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 2757)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE The recombinant origin of emerging humannorovirus GII.4/2008
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2757)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory
Medicine, Sanggye Paik Hospital, Inje University College of
Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
Korea (South Korea)
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2757
/organism="Norovirus Hu/GII/Seoul1073/KOR/2010"
/mol_type="genomic RNA"
/isolate="Hu/GII/Seoul1073/KOR/2010"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1336085"
/geo_loc_name="South Korea"
/collection_date="14-May-2010"
/note="genotype: GII"
CDS <1..810
/codon_start=1
/product="nonstructural protein"
/protein_id="AGM46412.1"
/translation="DYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVV
DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGD
DEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAG
WFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKIS
KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGRRNLAPSFVNEDGVE"
CDS 791..2413
/codon_start=1
/product="major capsid protein"
/protein_id="AGM46413.1"
/translation="MKMASNDASPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNVQNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2413..>2757
/codon_start=1
/product="minor capsid protein"
/protein_id="AGM46414.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTR"
ORIGIN
1 gattactctc ggtgggattc aacacaacag agagccgtgc tggcagccgc tctagaaatc
61 atggttaaat tctcctcaga accacatttg gctcaggtag tagcagaaga ccttctttct
121 cctagcgtgg tggatgtggg tgacttcaca atatcaatca acgagggtct tccctctggg
181 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcactct ctgtgcactc
241 tccgaagtta caaatttgtc cccagacatc atacaggcta attctctctt ctccttctat
301 ggtgatgatg aaattgttag tacagacata aaattagacc cagagaagtt gacagcaaag
361 cttaaggaat acgggttgaa accaacccgc cctgataaaa ctgaaggacc tcttgttatt
421 tctgaagact tagatggttt gactttcctg cggagaactg tgacccgcga cccagctggt
481 tggtttggaa aactggagca gagctcaata ctcaggcaaa tgtactggac taggggcccc
541 aaccatgaag atccatctga atcaatgatt ccacactctc aaagacccat acaattgatg
601 tctttactgg gagaggccgc actccacggc ccaacattct acagtaaaat cagcaaattg
661 gttattgcag agctaaaaga aggtggtatg gatttttacg tgcccaggca agagccaatg
721 ttcagatgga tgagattctc agatctgagc acgtgggagg gccgtcgcaa tctggctccc
781 agttttgtga atgaagatgg cgtcgaatga cgccagccca tctgatgggt ccgcagccaa
841 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgtcg gtgccgctat
901 tgcggcgcct gtagcgggcc aacaaaatgt aattgacccc tggattagaa acaattttgt
961 acaagcccct ggtggagagt tcacagtgtc ccctagaaac gctccaggtg aaatactatg
1021 gagcgcgccc ttaggccctg atctgaatcc ctacctatct catttggcca gaatgtataa
1081 tggttatgca ggtggttttg aagtgcaggt gatcctcgcg gggaacgcgt tcaccgccgg
1141 gaaaattata tttgcagcag tcccaccaaa ttttccaact gaaggcttga gtcccagcca
1201 ggtcactatg ttcccccaca taatagtgga tgttaggcaa ttggaacctg tgttgatccc
1261 cttacctgat gttaggaata acttctatca ttataatcag tcaaatgatt ctaccattaa
1321 attgatagca atgctgtata caccacttag ggctaataat gctggggaag atgtcttcac
1381 agtctcttgt cgagttctca cgaggccatc ccctgatttt gattttatat ttttggtgcc
1441 acctacagtt gagtcaagaa ctaaaccatt tactgtccca atcttaactg ttgaagaaat
1501 gaccaattca agattcccca ttcctttgga aaaattgttc acgggtccca gcagtgcctt
1561 tgttgttcaa ccacaaaatg gcagatgcac gactgatggc gtgctcttag gcaccaccca
1621 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccacattg caggttctcg
1681 taattacaca atgaatttgg cttctctaaa ttggaacaat tatgacccaa cagaagaaat
1741 tccagcccct ctaggaactc cagattttgt gggaaagatc caaggtgtgc tcacccaaac
1801 cacaaaggga gatggctcga cccgtggcca taaagctaca gtttatactg ggagtgcccc
1861 ctttactcca aagctgggca gtgttcaatt cagtactgat acagaaaatg attttgaaac
1921 tcaccaaaac acaaaattca ccccagtcgg cgtcatccag gatggtggca ccacccaccg
1981 aaatgaaccc caacaatggg tgctcccaag ttattcaggt agaaatgtcc agaatgtaca
2041 cctagcccct gctgtggccc ccacttttcc gggtgaacaa cttcttttct ttaggtccac
2101 tatgcccgga tgcagcgggt atcccaacat ggatttggat tgcctactcc cccaggagtg
2161 ggtgcagcac ttctaccaag aggcagctcc agcacaatct gatgtagctc tattgagatt
2221 tgtgaatcca gacacaggta gggtcctgtt tgagtgtaaa cttcataaat caggctatgt
2281 cacagtggct cacaccggcc agcatgattt ggtcatcccc cccaatggtt attttaggtt
2341 tgattcctgg gttaatcaat tctacacact tgcccccatg ggaaatggaa cggggcgtag
2401 acgtgcttta taatggctgg agctttcttt gctggattgg catctgatgt ccttagctct
2461 ggacttggct ccctaatcaa tgctggggct ggggctatca accaaaagat tgattttgaa
2521 aataacagaa aattgcagca agcttccttc cagtttagca gtaatctaca acaggcttcc
2581 tttcaacatg ataaagagat gctccaagca caaattgagg ccactaaaaa gttgcaacag
2641 gaaatgatga aagtcaaaca ggcaatgctc ttagaaggtg gattctctga aacagatgca
2701 gcccgtgggg caatcaacgc ccctatgaca aaggctttgg actggagcgg aacaagg
//