Typing tool
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Typing tool
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Complete norovirus genomes
| JX439836 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..810
ORF2: 791..2413
ORF3: 2413..2757
LOCUS JX439836 2757 bp RNA linear VRL 31-JUL-2013
DEFINITION Norovirus Hu/GII/Seoul1835/KOR/2011 nonstructural protein gene,
partial cds; major capsid protein gene, complete cds; and minor
capsid protein gene, partial cds.
ACCESSION JX439836
VERSION JX439836.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Seoul1835/KOR/2011
ORGANISM Norovirus Hu/GII/Seoul1835/KOR/2011
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 2757)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE The recombinant origin of emerging humannorovirus GII.4/2008
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2757)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory
Medicine, Sanggye Paik Hospital, Inje University College of
Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
Korea (South Korea)
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2757
/organism="Norovirus Hu/GII/Seoul1835/KOR/2011"
/mol_type="genomic RNA"
/isolate="Hu/GII/Seoul1835/KOR/2011"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1336144"
/geo_loc_name="South Korea"
/collection_date="28-Nov-2011"
/note="genotype: GII"
CDS <1..810
/codon_start=1
/product="nonstructural protein"
/protein_id="AGM46406.1"
/translation="DYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVV
DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGD
DEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAG
WFGKLEQSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKIS
KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGGRNLAPSFVNEDGVK"
CDS 791..2413
/codon_start=1
/product="major capsid protein"
/protein_id="AGM46407.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSASLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2413..>2757
/codon_start=1
/product="minor capsid protein"
/protein_id="AGM46408.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTR"
ORIGIN
1 gattactctc gatgggattc aacacaacag agagccgtgc tggcagcagc tctagaaatc
61 atggttaaat tctccccaga accacacttg gctcaggtag tcgcggagga ccttctctct
121 cctagcgtgg tggacgtggg cgacttcaca atatcaatca acgagggtct tccctctggg
181 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcactct ctgtgcgctc
241 tctgaagtca caaacctgtc ccctgacacc atacaggcta actccctctt ctctttttat
301 ggtgatgatg aaattgttag cacagatata aaattggacc cagagaaatt gacagcaaag
361 ctcagagaat atgggttaaa accaacccgc cctgacaaaa ctgaaggacc ccttgtcatc
421 tctgaagacc tgaatggcct aactttcctg cggagaactg tgacccgcga cccagctggt
481 tggtttggaa aactggagca gagttcaata ctcaggcaaa tgtactggac taggggtccc
541 aaccatggag acccatctga aacaatgatt ccacactccc aaagacccat acaattgatg
601 tccctactgg gggaggccgc tctccacggc ccagcatttt acagcaaaat cagcaaattg
661 gtcattgcag agctaaaaga aggtggcatg gatttttacg tgcccagaca agagccaatg
721 ttcagatgga tgagattctc agatctgagc acgtgggagg gcggtcgcaa tctggctccc
781 agttttgtga atgaagatgg cgtcaagtga cgccaaccca tctgatgggt ccacagccaa
841 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgtagttg gtgccgccat
901 tgcggcacct gtagcgggcc aacaaaatgt aattgacccc tggattagaa acaattttgt
961 acaagcccct ggtggagagt ttacagtatc ccctagaaac gctccaggtg aaatactatg
1021 gagcgcgtcc ttaggccctg atttgaatcc ctacctttct catttggcca gaatgtacaa
1081 tggttatgca ggtggttttg aagtgcaggt aatcctcgcg gggaacgcgt tcaccgccgg
1141 gaaaatcata tttgcagcag tcccaccaaa tttcccaact gaaggtttga gccccagcca
1201 ggtcactatg ttcccccaca taatagtaga tgttaggcaa ttggaacctg tgttaatccc
1261 cttacccgat gttaggaata atttctacca ttataatcaa tcaaatgacc ccaccatcaa
1321 attgatagcc atgctgtaca caccacttag ggctaataat gccggggacg atgtcttcac
1381 agtttcttgt cgagttctca cgagaccatc ccccgatttt gatttcatat ttttggtgcc
1441 acccacagtt gaatcaagaa ctaaaccatt ctctgtccca gttttaactg ttgaggagat
1501 gaccaattca aggttcccca ttcctttgga aaagttgttc acgggcccca gtagtgcctt
1561 tgttgttcaa ccacaaaacg gcaggtgcac gactgatggc gtgctcctag gtactaccca
1621 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccatattc caggcagtcg
1681 taactacaca atgaatttgg cctcccaaaa ttggaacagt tacgatccaa cagaagaaat
1741 cccagcccct ctaggaactc cagatttcgt ggggaagatt caaggtgtgc tcacccaaac
1801 cacaaggaca aatggctcga cccgcggcca caaagctaca gtgtacactg gaagcgccga
1861 cttttctcca aaactgggta gagttcaatt tgccactgac acagacaatg attttgaaac
1921 taaccaaaac acaaagttca ccccagtcgg tgttatccag gatggtagta ctaccccccg
1981 aaatgaaccc caacaatggg tgctaccaag ttactcaggc agaaacattc ataatgtgca
2041 cctggccccc gctgtagccc ccactttccc gggcgagcag ctcctcttct tcagatctac
2101 tatgcccgga tgcagcgggt accccaacat ggatttggac tgtctgctcc cccaggaatg
2161 ggtgcagtac ttctaccagg aggcagcccc agcacaatct gatgtggctc tgttaagatt
2221 tgtgaatcca gacacaggta gggttttgtt tgagtgtaag cttcataaat caggctatgt
2281 tacagtggct cacactggcc aacatgattt ggttatcccc cccaatggtt attttagatt
2341 tgattcctgg gtcaaccagt tctacacact tgcccccatg ggaaatggga cggggcgtag
2401 acgtgcatta taatggctgg agctttcttt gctggattgg catctgacgt ccttggctct
2461 ggacttggtt ccctaatcaa tgctggggct ggggccatca accaaaaagt tgaatttgaa
2521 aataacagaa aattgcaaca ggcttccttc caatttagta gcaatctaca acaggcctcc
2581 tttcaacatg acaaagagat gctccaagca caaattgagg caaccaaaaa gttgcaacag
2641 gaaatgatga gagttaaaca agcaatgctc ctagagggtg ggttctctga gacagatgca
2701 gcccgtgggg caatcaacgc ccccatgaca aaaactttgg actggagcgg aacaagg
//