Typing tool
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Complete norovirus genomes
JX439836 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..810 ORF2: 791..2413 ORF3: 2413..2757LOCUS JX439836 2757 bp RNA linear VRL 31-JUL-2013 DEFINITION Norovirus Hu/GII/Seoul1835/KOR/2011 nonstructural protein gene, partial cds; major capsid protein gene, complete cds; and minor capsid protein gene, partial cds. ACCESSION JX439836 VERSION JX439836.1 KEYWORDS . SOURCE Norovirus Hu/GII/Seoul1835/KOR/2011 ORGANISM Norovirus Hu/GII/Seoul1835/KOR/2011 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 2757) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE The recombinant origin of emerging humannorovirus GII.4/2008 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2757) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE Direct Submission JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory Medicine, Sanggye Paik Hospital, Inje University College of Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of Korea (South Korea) COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2757 /organism="Norovirus Hu/GII/Seoul1835/KOR/2011" /mol_type="genomic RNA" /isolate="Hu/GII/Seoul1835/KOR/2011" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1336144" /country="South Korea" /collection_date="28-Nov-2011" /note="genotype: GII" CDS <1..810 /codon_start=1 /product="nonstructural protein" /protein_id="AGM46406.1" /translation="DYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVV DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGD DEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAG WFGKLEQSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKIS KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGGRNLAPSFVNEDGVK" CDS 791..2413 /codon_start=1 /product="major capsid protein" /protein_id="AGM46407.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSASLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2413..>2757 /codon_start=1 /product="minor capsid protein" /protein_id="AGM46408.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKTLDWSGTR" ORIGIN 1 gattactctc gatgggattc aacacaacag agagccgtgc tggcagcagc tctagaaatc 61 atggttaaat tctccccaga accacacttg gctcaggtag tcgcggagga ccttctctct 121 cctagcgtgg tggacgtggg cgacttcaca atatcaatca acgagggtct tccctctggg 181 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcactct ctgtgcgctc 241 tctgaagtca caaacctgtc ccctgacacc atacaggcta actccctctt ctctttttat 301 ggtgatgatg aaattgttag cacagatata aaattggacc cagagaaatt gacagcaaag 361 ctcagagaat atgggttaaa accaacccgc cctgacaaaa ctgaaggacc ccttgtcatc 421 tctgaagacc tgaatggcct aactttcctg cggagaactg tgacccgcga cccagctggt 481 tggtttggaa aactggagca gagttcaata ctcaggcaaa tgtactggac taggggtccc 541 aaccatggag acccatctga aacaatgatt ccacactccc aaagacccat acaattgatg 601 tccctactgg gggaggccgc tctccacggc ccagcatttt acagcaaaat cagcaaattg 661 gtcattgcag agctaaaaga aggtggcatg gatttttacg tgcccagaca agagccaatg 721 ttcagatgga tgagattctc agatctgagc acgtgggagg gcggtcgcaa tctggctccc 781 agttttgtga atgaagatgg cgtcaagtga cgccaaccca tctgatgggt ccacagccaa 841 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgtagttg gtgccgccat 901 tgcggcacct gtagcgggcc aacaaaatgt aattgacccc tggattagaa acaattttgt 961 acaagcccct ggtggagagt ttacagtatc ccctagaaac gctccaggtg aaatactatg 1021 gagcgcgtcc ttaggccctg atttgaatcc ctacctttct catttggcca gaatgtacaa 1081 tggttatgca ggtggttttg aagtgcaggt aatcctcgcg gggaacgcgt tcaccgccgg 1141 gaaaatcata tttgcagcag tcccaccaaa tttcccaact gaaggtttga gccccagcca 1201 ggtcactatg ttcccccaca taatagtaga tgttaggcaa ttggaacctg tgttaatccc 1261 cttacccgat gttaggaata atttctacca ttataatcaa tcaaatgacc ccaccatcaa 1321 attgatagcc atgctgtaca caccacttag ggctaataat gccggggacg atgtcttcac 1381 agtttcttgt cgagttctca cgagaccatc ccccgatttt gatttcatat ttttggtgcc 1441 acccacagtt gaatcaagaa ctaaaccatt ctctgtccca gttttaactg ttgaggagat 1501 gaccaattca aggttcccca ttcctttgga aaagttgttc acgggcccca gtagtgcctt 1561 tgttgttcaa ccacaaaacg gcaggtgcac gactgatggc gtgctcctag gtactaccca 1621 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccatattc caggcagtcg 1681 taactacaca atgaatttgg cctcccaaaa ttggaacagt tacgatccaa cagaagaaat 1741 cccagcccct ctaggaactc cagatttcgt ggggaagatt caaggtgtgc tcacccaaac 1801 cacaaggaca aatggctcga cccgcggcca caaagctaca gtgtacactg gaagcgccga 1861 cttttctcca aaactgggta gagttcaatt tgccactgac acagacaatg attttgaaac 1921 taaccaaaac acaaagttca ccccagtcgg tgttatccag gatggtagta ctaccccccg 1981 aaatgaaccc caacaatggg tgctaccaag ttactcaggc agaaacattc ataatgtgca 2041 cctggccccc gctgtagccc ccactttccc gggcgagcag ctcctcttct tcagatctac 2101 tatgcccgga tgcagcgggt accccaacat ggatttggac tgtctgctcc cccaggaatg 2161 ggtgcagtac ttctaccagg aggcagcccc agcacaatct gatgtggctc tgttaagatt 2221 tgtgaatcca gacacaggta gggttttgtt tgagtgtaag cttcataaat caggctatgt 2281 tacagtggct cacactggcc aacatgattt ggttatcccc cccaatggtt attttagatt 2341 tgattcctgg gtcaaccagt tctacacact tgcccccatg ggaaatggga cggggcgtag 2401 acgtgcatta taatggctgg agctttcttt gctggattgg catctgacgt ccttggctct 2461 ggacttggtt ccctaatcaa tgctggggct ggggccatca accaaaaagt tgaatttgaa 2521 aataacagaa aattgcaaca ggcttccttc caatttagta gcaatctaca acaggcctcc 2581 tttcaacatg acaaagagat gctccaagca caaattgagg caaccaaaaa gttgcaacag 2641 gaaatgatga gagttaaaca agcaatgctc ctagagggtg ggttctctga gacagatgca 2701 gcccgtgggg caatcaacgc ccccatgaca aaaactttgg actggagcgg aacaagg //