Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| JX439832 | GII.4 New Orleans | |
|
|---|---|---|---|
| GII.P4 Hunter |
ORF1: 1..810
ORF2: 791..2413
ORF3: 2413..2764
LOCUS JX439832 2764 bp RNA linear VRL 31-JUL-2013
DEFINITION Norovirus Hu/GII/Seoul1296/KOR/2010 nonstructural protein gene,
partial cds; major capsid protein gene, complete cds; and minor
capsid protein gene, partial cds.
ACCESSION JX439832
VERSION JX439832.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Seoul1296/KOR/2010
ORGANISM Norovirus Hu/GII/Seoul1296/KOR/2010
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 2764)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE The recombinant origin of emerging humannorovirus GII.4/2008
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2764)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory
Medicine, Sanggye Paik Hospital, Inje University College of
Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
Korea (South Korea)
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2764
/organism="Norovirus Hu/GII/Seoul1296/KOR/2010"
/mol_type="genomic RNA"
/isolate="Hu/GII/Seoul1296/KOR/2010"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1336096"
/country="South Korea"
/collection_date="08-Sep-2010"
/note="genotype: GII"
CDS <1..810
/codon_start=1
/product="nonstructural protein"
/protein_id="AGM46394.1"
/translation="DYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVV
DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGD
DEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAG
WFGKLEQSSILRQMYWTRGSNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKIS
KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEAGRNLAPSFVNEDGVE"
CDS 791..2413
/codon_start=1
/product="major capsid protein"
/protein_id="AGM46395.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG
DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2413..>2764
/codon_start=1
/product="minor capsid protein"
/protein_id="AGM46396.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYW"
ORIGIN
1 gattactctc gatgggattc aacacaacag agagccgtgt tggcagcagc tctagaaatc
61 atggttaagt tctccccaga accacatttg gcccaggtag tcgcagaaga ccttctttct
121 cctagcgtgg tggacgtggg tgacttcaca atatcaatta acgagggtct tccttctggg
181 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcaccct ctgtgcgctc
241 tctgaagtta caaacttgtc tcctgacacc atacaagcta attccctctt ctctttttat
301 ggtgatgatg aaattgttag cacagacata aaattggacc cagaaaagtt gacagcaaag
361 ctcagggaat atgggttaaa accaacccgc cccgacaaaa ctgaaggacc ccttgccatc
421 tctgaagact tgaatggcct gactttcttg cggagaactg tgacccgcga cccagctggt
481 tggtttggaa aactggagca gagttcgata ctcaggcaaa tgtactggac taggggttcc
541 aaccatgaag acccatctga aacaatgatt ccacactccc aaagacccat acaattgatg
601 tccctactgg gggaggccgc actccacggc ccagcattct acagcaaaat cagcaagtta
661 gtcattgcag agctaaaaga aggtggcatg gatttttacg tgcccagaca agagccaatg
721 ttcagatgga tgagattctc agatctgagc acgtgggagg ccggtcgcaa tctggctccc
781 agttttgtga atgaagatgg cgtcgagtga cgccaaccca tctgatgggt ccacagccaa
841 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgttg gtgccgccat
901 tgcggcacct gtagcgggcc aacaaaatgt aattgacccc tggattagaa ataattttgt
961 acaagcccct ggtggagagt tcacagtatc ccctaggaac gctccaggtg aaatactgtg
1021 gagcgcgccc ctaggccctg atttgaatcc ttacctttcc catttggcca gaatgtacaa
1081 tggttatgca ggtggttttg aagtgcaggt aatcctcgcg gggaacgcgt tcaccgccgg
1141 aaaaatcata tttgcagcag tcccaccaaa tttcccaact gaaggcttga gccccagcca
1201 ggttactatg ttcccccaca taatagtaga tgttaggcaa ctggaacctg tgttgatccc
1261 cttacccgat gttaggaata atttctatca ctacaatcaa tcaaatgacc ccaccatcaa
1321 attgatagca atgttgtaca caccacttag ggctaataat gctggggacg atgtcttcac
1381 agtttcttgt cgggtactca cgagaccatc ccccgatttt gatttcatat ttttagtgcc
1441 acccacagtt gaatcaagaa ctaaaccatt ctctgtccca attttaactg ttgaggagat
1501 gaccaattca agattcccca ttcctttgga aaagctgttc acgggtccca gcagtgcctt
1561 tgttgttcaa ccacaaaacg gcaggtgcac gactgatggc gtgctcctag gtaccaccca
1621 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccatatta caggtagtcg
1681 taactacaca atgaatttgg ctactcaaaa ttggaacagt tatgacccaa cagaagaaat
1741 cccagcccct ctaggaactc cagatttcgt gggaaagatc caaggtgtgc tcacccaaac
1801 cacgagggca gatggctcga cccgtggaca caaagctaca gtgtacactg ggagcgccga
1861 ctttgctcca aaactgggta gagttcaatt tgccactgac acagacaatg attttgatgc
1921 taaccaaaac acaaagttca ccccagtcgg tgtcatccag gatggtgata ctgcccaccg
1981 aaatgaaccc caacaatggg tgctcccaag ttactcaggt agaaatagtc acaatgtgca
2041 cctggccccc gctgtagccc ccacttttcc gggtgagcaa cttctcttct tcagatccac
2101 tatgcccgga tgcagcgggt accccaacat ggatttggac tgtctgctcc cccaggaatg
2161 ggtgcagtat ttctatcaag aggcagcccc agcacaatct gatgtggctc tgctaagatt
2221 tgtgaatcca gacacaggta gggttttgtt tgagtgtaag cttcataaat caggctatgt
2281 tacagtggct cacaccggcc aacatgatct ggttatcccc cccaatggtt attttagatt
2341 tgattcctgg gtcaaccagt tctacacact tgcccccatg ggaaatggaa cggggcgtag
2401 acgtgcatta taatggctgg agctttcttt gctggattgg catctgacgt ccttggatcc
2461 gggcttggtt ctctgatcaa tgccggggct ggggccatca accaaaaagt tgaatttgaa
2521 aataacagaa aattgcaaca agcttccttc caattcagta gcaatctaca acaggcttcc
2581 tttcaacatg ataaagagat gctccaagca caaattgagg ccaccaaaaa gttgcaacag
2641 gaaatgatga gagttaaaca ggcaatgctc ctagagggtg gattctctga gacagatgca
2701 gcccgtgggg caatcaacgc ccccatgaca aaggctttgg actggagcgg aacaaggtac
2761 tggg
//