Typing tool
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Complete norovirus genomes
JX439831 | GII.4 New Orleans | ||
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GII.P4 Hunter |
ORF1: 1..810 ORF2: 791..2413 ORF3: 2413..2764LOCUS JX439831 2764 bp RNA linear VRL 31-JUL-2013 DEFINITION Norovirus Hu/GII/Seoul1121/KOR/2010 nonstructural protein gene, partial cds; major capsid protein gene, complete cds; and minor capsid protein gene, partial cds. ACCESSION JX439831 VERSION JX439831.1 KEYWORDS . SOURCE Norovirus Hu/GII/Seoul1121/KOR/2010 ORGANISM Norovirus Hu/GII/Seoul1121/KOR/2010 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 2764) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE The recombinant origin of emerging humannorovirus GII.4/2008 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2764) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE Direct Submission JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory Medicine, Sanggye Paik Hospital, Inje University College of Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of Korea (South Korea) COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2764 /organism="Norovirus Hu/GII/Seoul1121/KOR/2010" /mol_type="genomic RNA" /isolate="Hu/GII/Seoul1121/KOR/2010" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1336089" /country="South Korea" /collection_date="07-Jun-2010" /note="genotype: GII" CDS <1..810 /codon_start=1 /product="nonstructural protein" /protein_id="AGM46391.1" /translation="DYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVV DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGD DEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAG WFGKLEQSSILRQMYWTRGSNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKIS KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGGRNLAPSFVNEDGVE" CDS 791..2413 /codon_start=1 /product="major capsid protein" /protein_id="AGM46392.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTIDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG NTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQFLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2413..>2764 /codon_start=1 /product="minor capsid protein" /protein_id="AGM46393.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYW" ORIGIN 1 gattactctc gatgggattc aacacaacag agagccgtgt tggcagcagc tctagaaatc 61 atggttaagt tctccccaga accacatttg gcccaggtag tcgcagaaga ccttctttct 121 cctagcgtgg tggacgtggg tgacttcaca atatcaatta acgagggtct tccttctggg 181 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcaccct ctgtgcgctc 241 tctgaagtta caaacttgtc tcctgacacc atacaagcta attccctctt ctctttttat 301 ggtgatgatg aaattgttag cacagacata aaattggacc cagaaaagtt gacagcaaag 361 ctcagggaat atgggttaaa accaacccgc cccgacaaaa ctgaaggacc ccttgccatc 421 tctgaagact tgaatggcct gactttcttg cggagaactg tgacccgcga cccagctggt 481 tggtttggaa aactggagca gagttcaata ctcaggcaaa tgtactggac taggggttcc 541 aaccatgaag acccatctga aacaatgatt ccacactccc aaagacccat acaattgatg 601 tccctactgg gggaggccgc actccacggc ccagcattct acagcaaaat cagcaagtta 661 gtcattgcag agctaaaaga aggtggcatg gatttttacg tgcccagaca agagccaatg 721 ttcagatgga tgagattctc agatctgagc acgtgggagg gcggtcgcaa tctggctccc 781 agttttgtga atgaagatgg cgtcgagtga cgccaaccca tctgatgggt ccacagccaa 841 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgttg gtgccgccat 901 tgcggcacct gtagcgggcc aacaaaatgt aattgacccc tggattagaa ataattttgt 961 acaagcccct ggtggagagt tcacagtatc ccctaggaac gctccaggtg aaatactgtg 1021 gagcgcgccc ctaggccctg atttgaatcc ttacctttcc catttggcca gaatgtacaa 1081 tggttatgca ggtggttttg aagtgcaggt aatcctcgcg gggaacgcgt tcaccgccgg 1141 aaaaatcata tttgcagcag tcccaccaaa tttcccaact gaaggcttga gccccagcca 1201 ggttactatg ttcccccaca taatagtaga tgttaggcaa ctggaacctg tgttgatccc 1261 cttacccgat gttaggaata atttctatca ctacaatcaa tcaaatgacc ccaccatcaa 1321 attgatagca atgttgtaca caccacttag ggctaataat gctggggacg atgtctttac 1381 agtttcttgt cgggtactca cgagaccatc ccccgatttt gatttcatat ttttagtgcc 1441 acccacagtt gaatcaagaa ctaaaccatt ctctgtccca attttaactg ttgaggagat 1501 gaccaattca agattcccca ttcctttgga aaagctgttc acgggtccca gcagtgcctt 1561 tgttgttcaa ccacaaaacg gcaggtgcac gattgatggc gtgctcctag gtaccaccca 1621 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccatatta caggtagtcg 1681 taactacaca atgaatttgg ctactcaaaa ttggaacagt tatgacccaa cagaagaaat 1741 cccagcccct ctaggaactc cagatttcgt gggaaagatc caaggtgtgc tcacccaaac 1801 cacgagggca gatggctcga cccgtggaca caaagctaca gtgtacactg ggagcgccga 1861 ctttgctcca aaactgggta gagttcaatt tgccactgac acagacaatg attttgatgc 1921 taaccaaaac acaaagttca ccccagtcgg tgtcatccag gatggtaata ctgcccaccg 1981 aaatgaaccc caacaatggg tgctcccaag ttactcaggt agaaatagtc acaatgtgca 2041 cctggccccc gctgtagccc ccacttttcc gggtgagcaa tttctcttct tcagatccac 2101 tatgcccgga tgcagcgggt accccaacat ggatttggac tgtctgctcc cccaggaatg 2161 ggtgcagtat ttctatcaag aggcagcccc agcacaatct gatgtggctc tgctaagatt 2221 tgtgaatcca gacacaggta gggttttgtt tgagtgtaag cttcataaat caggctatgt 2281 tacagtggct cacaccggcc aacatgatct ggttatcccc cccaatggtt atttcagatt 2341 tgattcctgg gtcaaccagt tctacacact tgcccccatg ggaaatggaa cggggcgtag 2401 acgtgcatta taatggctgg agctttcttt gctggattgg catctgacgt ccttggatcc 2461 gggcttggtt ctctgatcaa tgccggggct ggggccatca accaaaaagt tgaatttgaa 2521 aataacagaa aattgcaaca agcttccttc caattcagta gcaatctaca acaggcttcc 2581 tttcaacatg ataaagagat gctccaagca caaattgagg ccaccaaaaa gttgcaacag 2641 gaaatgatga gagttaaaca ggcaatgctc ctagagggtg gattctctga gacagatgca 2701 gcccgtgggg caatcaacgc ccccatgaca aaggctttgg actggagcgg aacaaggtac 2761 tggg //