Typing tool
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Typing tool
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Complete norovirus genomes
| JX439830 | GII.4 New Orleans | |
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| GII.P4 Apeldoorn |
ORF1: 1..810
ORF2: 791..2413
ORF3: 2413..2764
LOCUS JX439830 2764 bp RNA linear VRL 31-JUL-2013
DEFINITION Norovirus Hu/GII/Seoul1049/KOR/2010 nonstructural protein gene,
partial cds; major capsid protein gene, complete cds; and minor
capsid protein gene, partial cds.
ACCESSION JX439830
VERSION JX439830.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Seoul1049/KOR/2010
ORGANISM Norovirus Hu/GII/Seoul1049/KOR/2010
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 2764)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE The recombinant origin of emerging humannorovirus GII.4/2008
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2764)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory
Medicine, Sanggye Paik Hospital, Inje University College of
Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
Korea (South Korea)
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2764
/organism="Norovirus Hu/GII/Seoul1049/KOR/2010"
/mol_type="genomic RNA"
/isolate="Hu/GII/Seoul1049/KOR/2010"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1336081"
/geo_loc_name="South Korea"
/collection_date="27-Apr-2010"
/note="genotype: GII"
CDS <1..810
/codon_start=1
/product="nonstructural protein"
/protein_id="AGM46389.1"
/translation="DYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVV
DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGD
DEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLAISEDLNGLTFLRRAVTRDPAG
WFGKLEQSSILRQMYWTRGSNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKIS
KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGVRNLAPSFVNEDGVE"
CDS 791..2413
/codon_start=1
/product="major capsid protein"
/protein_id="AGM46388.1"
/translation="MKMGSNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG
DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2413..>2764
/codon_start=1
/product="minor capsid protein"
/protein_id="AGM46390.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYW"
ORIGIN
1 gattactctc gatgggattc aacacaacag agagccgtgt tggcagcagc tctagaaatt
61 atggttaagt tctccccaga accacatttg gcccaggtag tcgcagagga ccttctttct
121 cctagcgtgg tggacgtggg tgacttcaca atatcaatta acgagggtct tccctctggg
181 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcaccct ctgtgcgctc
241 tctgaagtta caaacttgtc tcctgacacc atacaagcta attccctctt ctctttttat
301 ggtgatgatg aaattgttag cacagacata aaattggacc cagaaaagtt gacagcaaag
361 ctcagggaat atgggttaaa accaacccgc cccgacaaaa ctgaaggacc ccttgccatc
421 tctgaagact tgaatggcct gactttcttg cggagagctg tgacccgcga cccagctggt
481 tggtttggaa aactggagca gagttcaata ctcaggcaaa tgtactggac taggggttcc
541 aaccatgaag acccatctga aacaatgatt ccacactccc aaagacccat acaactgatg
601 tccctactgg gggaggccgc actccacggc ccagcattct acagcaaaat cagcaagtta
661 gtcattgcag agctaaaaga aggtggcatg gatttttacg tgcccagaca agagccaatg
721 ttcagatgga tgagattctc agatctgagc acgtgggagg gcgttcgcaa tctggctccc
781 agttttgtga atgaagatgg ggtcgaatga cgccaaccca tctgatgggt ccacagccaa
841 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgttg gtgccgccat
901 tgcggcgcct gtagcgggcc aacaaaatgt aattgacccc tggattagaa acaattttgt
961 acaagcccct ggtggagagt ttacagtatc ccctagaaac gctccaggtg aaatactatg
1021 gagcgcgccc ttaggccctg atttgaatcc ctacctttcc catttggcca gaatgtacaa
1081 tggttatgca ggtggttttg aagtgcaggt aatcctcgcg gggaacgcgt tcaccgccgg
1141 aaaaatcata tttgcagcag tcccaccaaa tttcccaact gaaggcttga gccccagcca
1201 ggtcactatg ttcccccaca taatagtaga tgttaggcaa ctggaacctg tgttgatccc
1261 cttacccgat gttaggaata atttctatca ctacaatcaa tcaaatgacc ccaccatcaa
1321 attgatagca atgttgtaca caccacttag ggctaataat gctggggacg atgtcttcac
1381 agtttcttgt cgggtactca cgagaccatc ccccgatttt gatttcatat ttctagtgcc
1441 acccacagtt gaatcaagaa ctaaaccatt ctctgtccca attttaactg ttgaggagat
1501 gaccaattca agattcccca ttcctttgga aaagctgttc acgggcccca gcagtgcctt
1561 tgttgttcaa ccacaaaacg gcaggtgcac gactgatggc gtgctcctgg gtaccaccca
1621 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccatatta caggtagtcg
1681 taactacaca atgaatttgg ctactcaaaa ttggaacagt tatgacccaa cagaagaaat
1741 cccagcccct ctaggaactc cagatttcgt gggaaagatc caaggtgtgc tcacccaaac
1801 cacgagggca gatggctcga cccgtggcca caaagctaca gtgtacactg ggagcgccga
1861 ctttgctcca aaactgggta gagttcaatt tgccactgac acagacaatg attttgatgc
1921 taaccaaaac acaaagttca ccccagtcgg tgtcatccag gatggtgata ctgcccaccg
1981 aaatgaaccc caacaatggg tgctcccaag ttactcaggc agaaatagtc acaatgtgca
2041 cctggccccc gctgtagccc ccacttttcc gggcgagcaa cttctcttct tcagatccac
2101 tatgcccgga tgcagcgggt accccaacat ggatttggac tgtctgcttc cccaggaatg
2161 ggtgcagtat ttctatcaag aggcagcccc agcacaatct gatgtggctc tgctaagatt
2221 tgtgaatcca gacacaggta gggttttgtt tgagtgtaag cttcataaat caggctatgt
2281 tactgtggct cacaccggcc aacatgattt ggttatcccc cccaatggtt atttcagatt
2341 tgattcctgg gtcaaccagt tctacacact tgcccccatg ggaaatggaa cggggcgtag
2401 acgtgcatta taatggctgg agctttcttt gctggattgg catctgacgt ccttggatcc
2461 ggacttggtt ctctgatcaa tgccggggct ggggccatca accaaaaagt tgaatttgaa
2521 aacaacagaa aattgcaaca agcttccttc caatttagta gcaatctaca acaggcttcc
2581 tttcaacatg ataaagagat gctccaagca caaattgagg ccaccaaaaa gttgcaacag
2641 gaaatgatga gagttaaaca ggcaatgctc ctagagggtg gattctctga gacagatgca
2701 gcccgtgggg caatcaacgc ccccatgaca aaggctttgg actggagcgg aacaaggtac
2761 tggg
//