Typing tool
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Complete norovirus genomes
JX439830 | GII.4 New Orleans | ||
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GII.P4 Hunter |
ORF1: 1..810 ORF2: 791..2413 ORF3: 2413..2764LOCUS JX439830 2764 bp RNA linear VRL 31-JUL-2013 DEFINITION Norovirus Hu/GII/Seoul1049/KOR/2010 nonstructural protein gene, partial cds; major capsid protein gene, complete cds; and minor capsid protein gene, partial cds. ACCESSION JX439830 VERSION JX439830.1 KEYWORDS . SOURCE Norovirus Hu/GII/Seoul1049/KOR/2010 ORGANISM Norovirus Hu/GII/Seoul1049/KOR/2010 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 2764) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE The recombinant origin of emerging humannorovirus GII.4/2008 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2764) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE Direct Submission JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory Medicine, Sanggye Paik Hospital, Inje University College of Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of Korea (South Korea) COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2764 /organism="Norovirus Hu/GII/Seoul1049/KOR/2010" /mol_type="genomic RNA" /isolate="Hu/GII/Seoul1049/KOR/2010" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1336081" /country="South Korea" /collection_date="27-Apr-2010" /note="genotype: GII" CDS <1..810 /codon_start=1 /product="nonstructural protein" /protein_id="AGM46389.1" /translation="DYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVV DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGD DEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLAISEDLNGLTFLRRAVTRDPAG WFGKLEQSSILRQMYWTRGSNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKIS KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGVRNLAPSFVNEDGVE" CDS 791..2413 /codon_start=1 /product="major capsid protein" /protein_id="AGM46388.1" /translation="MKMGSNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2413..>2764 /codon_start=1 /product="minor capsid protein" /protein_id="AGM46390.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYW" ORIGIN 1 gattactctc gatgggattc aacacaacag agagccgtgt tggcagcagc tctagaaatt 61 atggttaagt tctccccaga accacatttg gcccaggtag tcgcagagga ccttctttct 121 cctagcgtgg tggacgtggg tgacttcaca atatcaatta acgagggtct tccctctggg 181 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcaccct ctgtgcgctc 241 tctgaagtta caaacttgtc tcctgacacc atacaagcta attccctctt ctctttttat 301 ggtgatgatg aaattgttag cacagacata aaattggacc cagaaaagtt gacagcaaag 361 ctcagggaat atgggttaaa accaacccgc cccgacaaaa ctgaaggacc ccttgccatc 421 tctgaagact tgaatggcct gactttcttg cggagagctg tgacccgcga cccagctggt 481 tggtttggaa aactggagca gagttcaata ctcaggcaaa tgtactggac taggggttcc 541 aaccatgaag acccatctga aacaatgatt ccacactccc aaagacccat acaactgatg 601 tccctactgg gggaggccgc actccacggc ccagcattct acagcaaaat cagcaagtta 661 gtcattgcag agctaaaaga aggtggcatg gatttttacg tgcccagaca agagccaatg 721 ttcagatgga tgagattctc agatctgagc acgtgggagg gcgttcgcaa tctggctccc 781 agttttgtga atgaagatgg ggtcgaatga cgccaaccca tctgatgggt ccacagccaa 841 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgttg gtgccgccat 901 tgcggcgcct gtagcgggcc aacaaaatgt aattgacccc tggattagaa acaattttgt 961 acaagcccct ggtggagagt ttacagtatc ccctagaaac gctccaggtg aaatactatg 1021 gagcgcgccc ttaggccctg atttgaatcc ctacctttcc catttggcca gaatgtacaa 1081 tggttatgca ggtggttttg aagtgcaggt aatcctcgcg gggaacgcgt tcaccgccgg 1141 aaaaatcata tttgcagcag tcccaccaaa tttcccaact gaaggcttga gccccagcca 1201 ggtcactatg ttcccccaca taatagtaga tgttaggcaa ctggaacctg tgttgatccc 1261 cttacccgat gttaggaata atttctatca ctacaatcaa tcaaatgacc ccaccatcaa 1321 attgatagca atgttgtaca caccacttag ggctaataat gctggggacg atgtcttcac 1381 agtttcttgt cgggtactca cgagaccatc ccccgatttt gatttcatat ttctagtgcc 1441 acccacagtt gaatcaagaa ctaaaccatt ctctgtccca attttaactg ttgaggagat 1501 gaccaattca agattcccca ttcctttgga aaagctgttc acgggcccca gcagtgcctt 1561 tgttgttcaa ccacaaaacg gcaggtgcac gactgatggc gtgctcctgg gtaccaccca 1621 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccatatta caggtagtcg 1681 taactacaca atgaatttgg ctactcaaaa ttggaacagt tatgacccaa cagaagaaat 1741 cccagcccct ctaggaactc cagatttcgt gggaaagatc caaggtgtgc tcacccaaac 1801 cacgagggca gatggctcga cccgtggcca caaagctaca gtgtacactg ggagcgccga 1861 ctttgctcca aaactgggta gagttcaatt tgccactgac acagacaatg attttgatgc 1921 taaccaaaac acaaagttca ccccagtcgg tgtcatccag gatggtgata ctgcccaccg 1981 aaatgaaccc caacaatggg tgctcccaag ttactcaggc agaaatagtc acaatgtgca 2041 cctggccccc gctgtagccc ccacttttcc gggcgagcaa cttctcttct tcagatccac 2101 tatgcccgga tgcagcgggt accccaacat ggatttggac tgtctgcttc cccaggaatg 2161 ggtgcagtat ttctatcaag aggcagcccc agcacaatct gatgtggctc tgctaagatt 2221 tgtgaatcca gacacaggta gggttttgtt tgagtgtaag cttcataaat caggctatgt 2281 tactgtggct cacaccggcc aacatgattt ggttatcccc cccaatggtt atttcagatt 2341 tgattcctgg gtcaaccagt tctacacact tgcccccatg ggaaatggaa cggggcgtag 2401 acgtgcatta taatggctgg agctttcttt gctggattgg catctgacgt ccttggatcc 2461 ggacttggtt ctctgatcaa tgccggggct ggggccatca accaaaaagt tgaatttgaa 2521 aacaacagaa aattgcaaca agcttccttc caatttagta gcaatctaca acaggcttcc 2581 tttcaacatg ataaagagat gctccaagca caaattgagg ccaccaaaaa gttgcaacag 2641 gaaatgatga gagttaaaca ggcaatgctc ctagagggtg gattctctga gacagatgca 2701 gcccgtgggg caatcaacgc ccccatgaca aaggctttgg actggagcgg aacaaggtac 2761 tggg //