Typing tool
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Typing tool
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Complete norovirus genomes
| JX439829 | GII.4 New Orleans | |
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| GII.P16 |
ORF1: 1..836
ORF2: 817..2439
ORF3: 2439..2790
LOCUS JX439829 2790 bp RNA linear VRL 31-JUL-2013
DEFINITION Norovirus Hu/GII/Seoul1034/KOR/2010 nonstructural protein gene,
partial cds; major capsid protein gene, complete cds; and minor
capsid protein gene, partial cds.
ACCESSION JX439829
VERSION JX439829.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Seoul1034/KOR/2010
ORGANISM Norovirus Hu/GII/Seoul1034/KOR/2010
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 2790)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE The recombinant origin of emerging humannorovirus GII.4/2008
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2790)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory
Medicine, Sanggye Paik Hospital, Inje University College of
Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
Korea (South Korea)
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2790
/organism="Norovirus Hu/GII/Seoul1034/KOR/2010"
/mol_type="genomic RNA"
/isolate="Hu/GII/Seoul1034/KOR/2010"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1336078"
/country="South Korea"
/collection_date="05-Apr-2010"
/note="genotype: GII"
CDS <1..836
/codon_start=3
/product="nonstructural protein"
/protein_id="AGM46385.1"
/translation="PILGPGSADYSRWDSTQQRAVLAAALEIMVRFSAEPQLAQTVAE
DLLAPSVVDVGDFKISINEGLPSGVPCTSQWNSISHWLLTLCALSEVTNLSPDIVQAN
SMFSFYGDDEIVSTDIKLDPEKLTTKLREYGLKPTRPDKTEGPLIISEDLDGLTFLRR
TVSRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNETMIPHSQRPIQLMALLGEASLHG
PSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGRRNLAPSFVNEDGV
E"
CDS 817..2439
/codon_start=1
/product="major capsid protein"
/protein_id="AGM46386.1"
/translation="MKMGSNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2439..>2790
/codon_start=1
/product="minor capsid protein"
/protein_id="AGM46387.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTRYW"
ORIGIN
1 caccaatcct aggcccaggg agtgcagatt actcccgctg ggactcaaca caacagaggg
61 ctgttctagc agcggccttg gaaataatgg tcagattctc tgcagaacca caactggccc
121 aaacagttgc tgaggatctg ctggccccca gtgtggtaga tgtcggagac ttcaaaattt
181 caataaatga gggactccct tctggtgtac cgtgcacttc ccagtggaac tccatctcac
241 actggctgct aaccctctgt gctttgtctg aagtcactaa tctgtctcct gacatcgtgc
301 aggcaaattc catgttctca ttttacggtg atgacgagat cgtcagcacc gatataaaat
361 tggaccctga aaagttaacc accaaattga gggagtatgg tctaaaacca actcgcccag
421 acaaaaccga ggggcccctg atcatcagtg aggatttgga cgggctcacc ttcctccgga
481 ggacggtttc tcgtgaccca gccggttggt ttggaaagtt agatcaaagc tcaatactga
541 ggcagatgta ttggaccaga ggaccaaacc atgaagaccc caatgagaca atgatacccc
601 actctcaaag acccatacag ctcatggcac tgcttggtga ggcctccctt cacggaccct
661 ctttctacag taagattagt aaattggtca taactgaact caaagaaggt gggatggact
721 tttacgtgcc aagacaggaa cctatgttca gatggatgag gttttctgac ttgagcacgt
781 gggagggccg tcgcaatctg gctcccagtt ttgtgaatga agatggggtc gaatgacgcc
841 aacccatctg atgggtccac agccaacctt gtcccagagg tcaacaatga ggttatggct
901 ttggagcccg tagttggtgc cgccattgcg gcacctgtag cgggccaaca aaatgtaatt
961 gacccctgga ttagaaacaa ttttgtacaa gcccctggtg gagagtttac agtatcccct
1021 agaaacgctc caggtgaaat actatggagc gcgcccttag gccctgattt gaacccctac
1081 ctttcccatt tggccagaat gtacaatggt tatgcaggtg gttttgaagt gcaggtaatc
1141 ctcgcgggga acgcgttcac cgccgggaaa atcatatttg cagcagtccc accaaatttc
1201 ccgactgaag gtttgagccc cagccaggtc actatgttcc cccacataat agtagatgtt
1261 aggcaattgg aacctgtgtt gatcccctta cccgatgtta ggaataattt ctaccattat
1321 aatcaatcaa atgaccccac catcaaattg atagccatgc tgtacacacc acttagggct
1381 aataatgccg gggacgatgt cttcacagtt tcttgtcgag ttctcacgag accatccccc
1441 gattttgatt tcatattttt ggtgccaccc acagttgaat caagaactaa accattctct
1501 gtcccagttt taactgttga ggagatgacc aattcaaggt tccccattcc tttggaaaag
1561 ttgttcacgg gccccagtag tgcctttgtt gttcaaccac aaaacggcag gtgcacgact
1621 gatggcgtgc tcctaggtac tacccaactg tctcctgtca acatctgcac cttcagaggg
1681 gatgtcaccc atattccagg cagtcgtaac tacacaatga atttggcctc ccaaaattgg
1741 aacagttacg atccaacaga agaaatccca gcccctctag gaactccaga tttcgtgggg
1801 aagattcaag gtgtgctcac ccaaaccaca aggacaaatg gctcgacccg cggccacaaa
1861 gctacagtgt acactgggag cgccgacttt tctccaaaac tgggtagagt tcaatttgcc
1921 actgacacag acaatgattt tgaaactaac caaaacacaa agttcacccc agtcggtgtt
1981 atccaggatg gtagtactac cccccgaaat gaaccccaac aatgggtgct cccaagttac
2041 tcaggcagaa acattcataa tgtgcacctg gcccccgctg tagcccccac tttcccgggc
2101 gagcagctcc tcttcttcag atctactatg cccggatgca gcgggtaccc caacatggat
2161 ttggactgtc tgctccccca ggaatgggtg cagtacttct accaggaggc agccccagca
2221 caatctgatg tggctctgtt aagatttgtg aatccagaca caggtagggt tttgtttgag
2281 tgtaagcttc ataaatcagg ctatgttaca gtggctcaca ctggccagca tgatttggtt
2341 atccccccca atggttattt tagatttgat tcctgggtca accagttcta cacacttgcc
2401 cccatgggaa atgggacggg gcgtagacgt gcattataat ggctggagct ttctttgctg
2461 gattggcatc tgacgtcctt ggctctggac ttggttccct aatcaatgct ggggctgggg
2521 ccatcaacca aaaagttgaa tttgaaaata acagaaaatt gcaacaggct tccttccaat
2581 ttagtagcaa tctacaacag gcctcctttc aacatgacaa agagatgctc caagcacaaa
2641 ttgaggccac caaaaagttg caacaggaaa tgatgagagt taaacaagca atgctcctag
2701 agggtggatt ctctgagaca gatgcagccc gtggggcaat caacgccccc atgacaaaaa
2761 ctttggactg gagcggaaca aggtactggg
//