Typing tool
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Typing tool
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Complete norovirus genomes
| JX439826 | GII.4 New Orleans | |
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| GII.P4 Yerseke |
ORF1: 1..1584
ORF2: 1565..3187
ORF3: 3187..3531
LOCUS JX439826 3531 bp RNA linear VRL 31-JUL-2013
DEFINITION Norovirus Hu/GII/Seoul1400/KOR/2010 nonstructural protein gene,
partial cds; major capsid protein gene, complete cds; and minor
capsid protein gene, partial cds.
ACCESSION JX439826
VERSION JX439826.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Seoul1400/KOR/2010
ORGANISM Norovirus Hu/GII/Seoul1400/KOR/2010
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3531)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE The recombinant origin of emerging humannorovirus GII.4/2008
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3531)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory
Medicine, Sanggye Paik Hospital, Inje University College of
Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
Korea (South Korea)
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3531
/organism="Norovirus Hu/GII/Seoul1400/KOR/2010"
/mol_type="genomic RNA"
/isolate="Hu/GII/Seoul1400/KOR/2010"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1336110"
/country="South Korea"
/collection_date="10-Dec-2010"
/note="genotype: GII"
CDS <1..1584
/codon_start=1
/product="nonstructural protein"
/protein_id="AGM46376.1"
/translation="NTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPKLSTKTK
FWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEA
AKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQ
ASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGG
LMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAAL
EIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLT
LCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKT
EGPLAISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGSNHEDPSETMIPH
SQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLS
TWEGARNLAPSFVNEDGVE"
CDS 1565..3187
/codon_start=1
/product="major capsid protein"
/protein_id="AGM46377.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG
DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3187..>3531
/codon_start=1
/product="minor capsid protein"
/protein_id="AGM46378.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTR"
ORIGIN
1 aacactgtca tatgtgccac ccaggggagt gagggagagg ctacacttga aggtggtgac
61 aataaaggga catactgtgg tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc
121 accaagacca aattctggag atcgtccaca gcaccactcc cacctggcac ctatgaacca
181 gcctatcttg gtggcaagga ccccagagtc aagggtggcc cttcactaca gcaggtcatg
241 agggatcagc tgaagccatt cacagagccc aggggcaagc caccaaagcc aagtgtgttg
301 gaagctgcta agaaaaccat catcaatgtc cttgaacaaa ctattgatcc acctgagaaa
361 tggtcgttcg cacaagcttg cgcgtccctt gacaagacca cctccagtgg ccatccgcat
421 cacatgcgga aaaatgactg ctggaacggg gagtccttca caggcaagct ggcagaccag
481 gcttccaagg ccaacctgat gtttgaagaa gggaagaaca tgacgccagt ctatacagct
541 gcgcttaagg acgaattagt taaaactgac aaaatttatg gcaagatcaa aaagaggctt
601 ctctggggct cggatttggc gaccatgatc cggtgtgctc gagcattcgg aggcctaatg
661 gatgaactca aagcgcactg tgtcacactt cccattagag ttggtatgaa tatgaatgag
721 gatggcccca tcatcttcga gaggcactct aggtacacat accactatga tgctgattac
781 tctcgatggg attcaacaca acagagagcc gtgttggcag cagctctaga aatcatggtt
841 aagttctccc cagaaccaca tttggcccag gtagtcgcag aagaccttct ttctcctagc
901 gtggtggacg tgggtgactt cacaatatca attaacgagg gtcttccctc tggggtgccc
961 tgcacctccc aatggaactc catcgcccac tggcttctca ccctctgtgc gctctctgaa
1021 gttacaaatt tgtctcctga caccatacaa gctaattccc tcttctcttt ttatggtgat
1081 gatgaaattg ttagcacaga cataaaattg gatccagaaa agttgacagc aaaactcagg
1141 gaatatgggt taaaaccaac ccgtcccgac aaaactgaag gaccccttgc catctctgaa
1201 gacttgaatg gcctgacttt cctacggaga actgtgaccc gcgacccagc tggttggttt
1261 ggaaaactgg agcagagttc aatactcagg caaatgtact ggactagggg ctccaaccat
1321 gaagacccat ctgaaacaat gattccacac tcccaaaggc ccatacaact gatgtcccta
1381 ctgggggagg ccgcgctcca cggcccagca ttctacagca agatcagcaa gttagtcatt
1441 gcagagctaa aagaaggtgg catggatttt tacgtgccca gacaagagcc aatgttcaga
1501 tggatgagat tctcagatct gagcacgtgg gagggcgctc gcaatctggc tcccagtttt
1561 gtgaatgaag atggcgtcga gtgacgccaa cccatctgat gggtccgcag ccaacctcgt
1621 cccagaggtc aacaatgagg ttatggcttt ggagcccgtt gttggtgccg ctattgcggc
1681 acctgtagcg ggccaacaaa atgtaattga cccctggatt agaaacaatt ttgtacaagc
1741 ccctggtgga gagttcacag tgtcccctag aaacgctcca ggtgaaatac tatggagcgc
1801 gcccttaggc cctgatttga atccctacct ttcccatttg gccagaatgt acaatggtta
1861 tgcaggtggt tttgaagtgc aggtaatcct cgcggggaac gcgttcaccg ccggaaaaat
1921 catatttgca gcagtcccac caaatttccc aactgaaggc ttgagcccca gccaggtcac
1981 catgttcccc cacataatag tagatgttag gcaattggaa cctgtgttga tccccttacc
2041 cgatgttagg aataatttct atcactacaa tcaatcaaat gaccccacca tcaaattgat
2101 agcaatgttg tatacaccac ttagggctaa taatgctggg gacgatgtct tcacagtttc
2161 ttgtcgggtt ctcacgagac catcccccga ttttgacttc atatttttag taccacccac
2221 agttgagtca agaactaaac cattctctgt cccaatttta actgttgagg agatgaccaa
2281 ttcaagattc cccattcctt tggaaaagct gttcacgggt cccagcagtg cctttgttgt
2341 tcaaccacaa aacggcagat gcacgactga tggcgtgctc ctaggtacca ctcaactgtc
2401 tcctgtcaac atctgcacct tcagagggga tgtcacccat atcacaggta gtcgtaacta
2461 cacaatgaat ttggctactc aaaattggaa cagttatgac ccaacagaag aaatcccagc
2521 ccctctagga actccagatt tcgtggggaa gattcaaggt gtgctcaccc aaaccacaag
2581 ggcagatggc tcgacccgcg gccacaaagc tacagtgtac actgggagcg ccgattttgc
2641 tccaaaactg ggtagagttc aatttgccac tgacacagac aatgattttg atgctaacca
2701 aaacacaaag ttcaccccag tcggtgtcat ccaggatggt gacactgccc accgaaatga
2761 accccaacaa tgggtgctcc caagttactc aggcagaaat agtcacaatg tgcacctggc
2821 ccccgctgta gcccccactt ttccgggtga gcaacttctc ttcttcagat ccactatgcc
2881 cggatgcagc gggtacccca acatggattt ggactgcctg ctcccccagg aatgggtgca
2941 gtatttctat caagaggcag ccccagcaca atctgatgtg gctctgctaa gatttgtgaa
3001 tccagacaca ggtagggttt tgtttgagtg taaacttcat aaatcaggct atgttacagt
3061 ggctcacacc ggtcaacatg atttggttat cccccccaat ggttatttta gatttgattc
3121 ctgggtcaac cagttctaca cacttgcccc catgggaaat ggaacggggc gtagacgtgc
3181 attataatgg ctggagcttt ctttgctgga ttggcatctg acgtccttgg ctccggactt
3241 ggttctctga tcaatgccgg ggctggggcc atcaaccaaa aagttgaatt tgaaaataac
3301 agaaaattgc aacaagcttc cttccaattt agcagtaatc tacaacaggc ttcctttcaa
3361 catgataaag agatgctcca agcacaaatt gaggccacca aaaagttgca acaggaaatg
3421 atgagagtta aacaggcaat gctcctagag ggtggattct ctgagacaga tgcagcccgt
3481 ggggcaatca acgcccccat gacaaaggct ttggactgga gcggaacaag g
//