Typing tool
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Complete norovirus genomes
JX439824 | GII.4 New Orleans | ||
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GII.P4 Yerseke |
ORF1: 1..1584 ORF2: 1565..3187 ORF3: 3187..3531LOCUS JX439824 3531 bp RNA linear VRL 31-JUL-2013 DEFINITION Norovirus Hu/GII/Seoul1378/KOR/2010 nonstructural protein gene, partial cds; major capsid protein gene, complete cds; and minor capsid protein gene, partial cds. ACCESSION JX439824 VERSION JX439824.1 KEYWORDS . SOURCE Norovirus Hu/GII/Seoul1378/KOR/2010 ORGANISM Norovirus Hu/GII/Seoul1378/KOR/2010 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3531) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE The recombinant origin of emerging humannorovirus GII.4/2008 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3531) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE Direct Submission JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory Medicine, Sanggye Paik Hospital, Inje University College of Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of Korea (South Korea) COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3531 /organism="Norovirus Hu/GII/Seoul1378/KOR/2010" /mol_type="genomic RNA" /isolate="Hu/GII/Seoul1378/KOR/2010" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1336104" /country="South Korea" /collection_date="04-Dec-2010" /note="genotype: GII" CDS <1..1584 /codon_start=1 /product="nonstructural protein" /protein_id="AGM46371.1" /translation="NTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPKLSTKTK FWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEA AKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQ ASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGG LMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAAL EIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLT LCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKT EGPLAISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGSNHEDPSETMIPH SQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLS TWEGGRNLAPSFVNEDGVE" CDS 1565..3187 /codon_start=1 /product="major capsid protein" /protein_id="AGM46370.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVVLAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 3187..>3531 /codon_start=1 /product="minor capsid protein" /protein_id="AGM46372.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTR" ORIGIN 1 aacactgtca tatgtgccac ccaggggagt gagggagagg ctacacttga aggtggtgac 61 aataaaggga catactgtgg tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc 121 accaagacca aattctggag atcgtccaca gcaccactcc cacctggcac ctatgaacca 181 gcctatcttg gtggcaagga ccccagagtc aagggtggcc cttcactaca gcaggtcatg 241 agggatcagc tgaagccatt cacagagccc aggggcaagc caccaaagcc aagtgtgttg 301 gaagctgcta agaaaaccat catcaatgtc cttgaacaaa ctattgatcc acctgagaaa 361 tggtcgttcg cacaagcttg cgcgtccctt gacaagacca cctccagtgg ccatccgcat 421 cacatgcgga aaaatgactg ctggaacggg gagtccttca caggcaagct ggcagaccag 481 gcttccaagg ccaacctgat gtttgaagaa gggaagaaca tgacgccagt ctatacagct 541 gcgcttaagg acgaattagt taaaactgac aaaatttatg gcaagatcaa aaagaggctt 601 ctctggggct cggatttggc gaccatgatc cggtgtgctc gagcattcgg aggcctaatg 661 gatgaactca aagcgcactg tgtcacactt cccattagag ttggtatgaa tatgaatgag 721 gatggcccca tcatcttcga gaggcactct aggtacacat accactatga tgctgattac 781 tctcgatggg attcaacaca acagagagcc gtgttggcag cagctctaga aatcatggtt 841 aagttctccc cagaaccaca tttggcccag gtagtcgcag aagaccttct ttctcctagc 901 gtggtggacg tgggtgactt cacaatatca attaacgagg gtcttccctc tggggtgccc 961 tgcacctccc aatggaactc catcgcccac tggcttctca ccctctgtgc gctctctgaa 1021 gttacaaatt tgtctcctga caccatacaa gctaattccc tcttctcttt ttatggtgat 1081 gatgaaattg ttagcacaga cataaaattg gatccagaaa agttgacagc aaaactcagg 1141 gaatatgggt taaaaccaac ccgtcccgac aaaactgaag gaccccttgc catctctgaa 1201 gacttgaatg gcctgacttt cctacggaga actgtgaccc gcgacccagc tggttggttt 1261 ggaaaactgg agcagagttc aatactcagg caaatgtact ggactagggg ctccaaccat 1321 gaagacccat ctgaaacaat gattccacac tcccaaaggc ccatacaact gatgtcccta 1381 ctgggggagg ccgcgctcca cggcccagca ttctacagca agatcagcaa gttagtcatt 1441 gcagagctaa aagaaggtgg catggatttt tacgtgccca gacaagagcc aatgttcaga 1501 tggatgagat tctcagatct gagcacgtgg gagggcggtc gcaatctggc tcccagtttt 1561 gtgaatgaag atggcgtcga gtgacgccaa cccatctgat gggtccacag ccaacctcgt 1621 cccagaggtc aacaatgagg ttatggcttt ggagcccgtt gttggtgccg ctattgcggc 1681 acctgtagcg ggccaacaaa atgtaattga cccctggatt agaaacaatt ttgtacaagc 1741 ccctggtgga gagttcacag tatcccctag aaacgctcca ggtgaaatac tatggagcgc 1801 gcccttaggc cctgatttga atccctacct ttcccatttg gccagaatgt acaatggtta 1861 tgcaggtggt tttgaagtgc aggtagtcct cgcggggaac gcgttcaccg ccggaaaaat 1921 catatttgca gcagtcccac caaatttccc aactgaaggc ttgagcccca gccaggtcac 1981 tatgtttccc cacataatag tagatgttag gcaattggaa cctgtgttga tccccttacc 2041 cgatgttagg aataatttct atcactacaa tcaatcaaat gaccccacca tcaaattgat 2101 agcaatgttg tatacaccac ttagggctaa taatgctggg gacgatgtct tcacagtttc 2161 ttgtcgggtt ctcacgagac catcccccga ttttgacttc atatttttag taccacccac 2221 agttgagtca agaactaaac cattctctgt cccaatttta actgttgagg agatgaccaa 2281 ttcaagattc cccattcctt tggaaaagct gttcacgggt cccagcagtg cctttgttgt 2341 tcaaccacaa aacggcagat gcacgactga tggcgtactc ctaggtacca ctcaactgtc 2401 tcctgtcaac atctgcacct tcagagggga tgtcacccat atcacaggta gtcgtaacta 2461 cacaatgaat ttggctactc aaaattggaa cagttatgac ccaacagaag aaatcccagc 2521 ccccctagga actccagatt tcgtggggaa gattcaaggt gtgctcaccc aaaccacaag 2581 ggcagatggc tcgacccgcg gccacaaagc tacagtgtac actgggagcg ccgattttgc 2641 tccaaaactg ggtagagttc aatttgccac tgacacagac aatgattttg atgctaacca 2701 aaacacaaag ttcaccccag tcggtgtcat ccaggatggt gacactgccc accgaaatga 2761 accccaacaa tgggtgctcc caagttactc aggcagaaat agtcacaatg tgcacctggc 2821 ccccgctgta gcccccactt ttccgggtga gcaacttctc ttcttcagat ccactatgcc 2881 cggatgcagc gggtacccca acatggattt ggactgcctg ctcccccagg aatgggtgca 2941 gtatttctat caagaggcag ccccagcaca atctgatgtg gctctgctaa gatttgtgaa 3001 tccagacaca ggtagggttt tgtttgagtg taaacttcat aaatcaggct atgttacagt 3061 ggctcacacc ggtcaacatg atttggttat cccccccaat ggttatttta gatttgattc 3121 ctgggtcaac cagttctaca cacttgcccc catgggaaat ggaacggggc gtagacgtgc 3181 attataatgg ctggagcttt ctttgctgga ttggcatctg acgtccttgg ctccggactt 3241 ggttctctga tcaatgccgg ggctggggcc atcaaccaaa aagttgaatt tgaaaataac 3301 agaaaattgc aacaagcttc cttccaattt agcagtaatc tacaacaggc ttcctttcaa 3361 catgataaag agatgctcca agcacaaatt gaggccacca aaaagttgca acaggaaatg 3421 atgagagtta aacaggcaat gctcctagag ggtggattct ctgagacaga tgcagcccgt 3481 ggggcaatca acgcccccat gacaaaggct ttggactgga gcggaacaag g //