Typing tool
|
Complete norovirus genomes
JX439822 | GII.4 New Orleans | ||
---|---|---|---|
GII.P4 New Orleans |
ORF1: 1..1584 ORF2: 1565..3187 ORF3: 3187..3531LOCUS JX439822 3531 bp RNA linear VRL 31-JUL-2013 DEFINITION Norovirus Hu/GII/Seoul1391/KOR/2010 nonstructural protein gene, partial cds; major capsid protein gene, complete cds; and minor capsid protein gene, partial cds. ACCESSION JX439822 VERSION JX439822.1 KEYWORDS . SOURCE Norovirus Hu/GII/Seoul1391/KOR/2010 ORGANISM Norovirus Hu/GII/Seoul1391/KOR/2010 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3531) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE The recombinant origin of emerging humannorovirus GII.4/2008 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3531) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE Direct Submission JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory Medicine, Sanggye Paik Hospital, Inje University College of Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of Korea (South Korea) COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3531 /organism="Norovirus Hu/GII/Seoul1391/KOR/2010" /mol_type="genomic RNA" /isolate="Hu/GII/Seoul1391/KOR/2010" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1336108" /country="South Korea" /collection_date="09-Dec-2010" /note="genotype: GII" CDS <1..1584 /codon_start=1 /product="nonstructural protein" /protein_id="AGM46365.1" /translation="NTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPTLSTKTK FWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPKPSVLEA AKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQ ASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGG LMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAAL EIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLT LCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKT EGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIPH SQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRREPMFRWMRFSDLS TWEGGRNLAPSFVNEDGVE" CDS 1565..3187 /codon_start=1 /product="major capsid protein" /protein_id="AGM46366.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGSRRAL" CDS 3187..>3531 /codon_start=1 /product="minor capsid protein" /protein_id="AGM46364.1" /translation="MAGAFFAGLAFDVLGSGLGSVINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKTLDWSGTR" ORIGIN 1 aacactgtca tatgtgccac ccaggggagt gaaggagagg ctacacttga aggtggtgac 61 aacaagggga cgtactgtgg tgcaccaatc ctaggcccag ggagtgcccc aacacttagc 121 accaagacca aattctggag atcgtccaca gcatcactcc cacctggcac ctatgaacca 181 gcctatcttg gtggcaagga ccctagggtc aagggtggtc cttcactgca gcaagtcatg 241 agggaacagt tgaagccatt cacagagccc aggggcaagc caccaaaacc aagtgtatta 301 gaagctgcca agaagaccat catcaatgtc cttgagcaaa caattgatcc acctgagaaa 361 tggtcgttcg cacaagcttg cgcgtccctt gacaagacca cttccagtgg tcatccgcac 421 cacatgcgga aaaacgactg ctggaacggg gagtccttca caggcaagct ggcagaccag 481 gcttccaagg ccaacctgat gtttgaagaa gggaagaaca tgaccccagt ctacacagct 541 gcgctcaagg atgagttagt taaaactgac aaaatttatg gtaagatcaa gaagcggctt 601 ctctggggct cggacttggc gaccatgatc cggtgtgctc gagcattcgg aggcctaatg 661 gatgagctca aagcacactg tgtcacactt cctattagag ttggcatgaa tatgaatgag 721 gatggcccca tcatcttcga gaggcattcc aggtacacat atcactatga tgctgattac 781 tctcgatggg attcaacaca acagagagcc gtgttggcag cagctctaga aatcatggtt 841 aaattctccc cagaaccaca cttggctcag gtagtcgcgg aggaccttct ttctcctagc 901 gtggtggacg tgggcgactt cacaatatca atcaacgagg gtcttccctc tggggtgccc 961 tgcacctccc aatggaactc catcgcccac tggcttctca ctctctgtgc gctctctgaa 1021 gtcacaaacc tgtcccctga caccatacag gctaactccc tcttctcttt ttatggtgat 1081 gatgaaattg ttagcacaga cataaaattg gacccagaaa aattgacagc aaagctcaga 1141 gaatatgggt taaaaccaac ccgccctgac aaaactgaag gaccccttgt catctctgaa 1201 gacctgaatg gcctaacttt cctgcggaga actgtgaccc gcgacccagc tggttggttt 1261 ggaaaactgg agcagagttc aatactcagg caaatgtact ggactagggg tcccaaccat 1321 ggagacccat ctgaaacaat gattccacac tcccaaagac ccatacaatt gatgtcccta 1381 ctgggagagg ccgctctcca cggcccagca ttttacagca aaatcagcaa attggtcatt 1441 gcagagctaa aagaaggtgg catggatttt tacgtgccca gacgagagcc aatgttcaga 1501 tggatgagat tctcagatct gagcacgtgg gagggcggtc gcaatctggc tcccagtttt 1561 gtgaatgaag atggcgtcga gtgacgccaa cccatctgat gggtccacag ccaaccttgt 1621 cccagaggtc aacaatgagg ttatggcttt ggagcccgta gttggtgccg ccattgcggc 1681 acctgtagcg ggccaacaaa atgtaattga cccctggatt agaaacaatt ttgtacaagc 1741 ccctggtgga gagtttacag tatcccctag aaacgctcca ggtgaaatac tatggagcgc 1801 gcccttaggc cctgatttga atccctacct ttcccatttg gccagaatgt acaatggtta 1861 tgcaggtggt tttgaagtgc aggtaatcct cgcggggaac gcgttcaccg ccgggaaaat 1921 catatttgca gcagtcccac caaatttccc aactgaaggt ttgagcccca gccaggtcac 1981 tatgttcccc cacataatag tagatgttag gcaattggaa cctgtgttga ttcccttacc 2041 cgatgttagg aataatttct accattataa tcaatcaaat gaccccacca tcaaattgat 2101 agcaatgttg tacacaccac ttagggctaa taatgccggg gacgatgtct tcacagtctc 2161 ttgtcgagtt ctcacgagac catcccccga ttttgatttc atatttttgg tgccacccac 2221 agttgaatca agaactaaac cattctctgt cccagtttta actgttgagg agatgaccaa 2281 ttcaaggttc cccattcctt tggaaaagtt gttcacgggt cccagtagtg cctttgttgt 2341 tcaaccacaa aacggcaggt gcacgacgga tggcgtactc ctaggtacta cccaactgtc 2401 ccccgtcaac atctgcacct tcagagggga tgtcacccat attccaggca gtcgcaacta 2461 cacaatgaat ttggcctccc aaaattggaa cagttacgat ccaacagaag aaatcccagc 2521 ccccctagga actccagatt tcgtggggaa gattcaaggt gtgctcaccc aaaccacaag 2581 gacaaatggc tcgacccgcg gccacaaagc tacagtgtac actgggagcg ccgacttttc 2641 tccaaaactg ggtagagttc aatttgccac tgacacagac aatgattttg aaactaacca 2701 aaacacaaag ttcaccccag tcggtgttat ccaggatggt agtaccaccc cccgaaatga 2761 accccaacaa tgggtgctcc caagttactc aggcagaaac attcacaatg tgcacctggc 2821 ccccgctgta gcccccactt tcccgggcga gcagctcctc ttcttcagat ctactatgcc 2881 cggatgcagc gggtacccca acatggactt ggactgtctg ctcccccagg aatgggtgca 2941 atatttctac caggaggcag ccccagcaca atctgatgtg gctctgctaa gatttgtgaa 3001 tccggacaca ggtagggttt tgtttgagtg taagcttcat aaatcaggct atgttacagt 3061 ggctcacact ggccaacatg atttggttat cccccccaat ggttatttta gatttgattc 3121 ctgggtcaac cagttttaca cacttgcccc catgggaaat gggacgggga gtagacgtgc 3181 attataatgg ccggagcttt ctttgctgga ttggcatttg acgtccttgg ctctggactt 3241 ggttccgtaa tcaatgctgg ggctggggcc atcaaccaaa aagttgaatt tgaaaataac 3301 agaaaattgc aacaagcttc cttccaattt agtagcaatc tacaacaggc ttcctttcaa 3361 catgacaaag agatgctcca agcacaaatt gaggccacca aaaagttgca acaggaaatg 3421 atgagagtta aacaagcaat gctcctagag ggtggattct ctgagacaga tgcagcccgt 3481 ggggcaatca acgcccccat gacaaaaact ttggactgga gcggaacaag g //