Typing tool
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Typing tool
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Complete norovirus genomes
| JX439822 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..1584
ORF2: 1565..3187
ORF3: 3187..3531
LOCUS JX439822 3531 bp RNA linear VRL 31-JUL-2013
DEFINITION Norovirus Hu/GII/Seoul1391/KOR/2010 nonstructural protein gene,
partial cds; major capsid protein gene, complete cds; and minor
capsid protein gene, partial cds.
ACCESSION JX439822
VERSION JX439822.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Seoul1391/KOR/2010
ORGANISM Norovirus Hu/GII/Seoul1391/KOR/2010
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3531)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE The recombinant origin of emerging humannorovirus GII.4/2008
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3531)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory
Medicine, Sanggye Paik Hospital, Inje University College of
Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
Korea (South Korea)
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3531
/organism="Norovirus Hu/GII/Seoul1391/KOR/2010"
/mol_type="genomic RNA"
/isolate="Hu/GII/Seoul1391/KOR/2010"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1336108"
/geo_loc_name="South Korea"
/collection_date="09-Dec-2010"
/note="genotype: GII"
CDS <1..1584
/codon_start=1
/product="nonstructural protein"
/protein_id="AGM46365.1"
/translation="NTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPTLSTKTK
FWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPKPSVLEA
AKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQ
ASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGG
LMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAAL
EIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLT
LCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKT
EGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIPH
SQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRREPMFRWMRFSDLS
TWEGGRNLAPSFVNEDGVE"
CDS 1565..3187
/codon_start=1
/product="major capsid protein"
/protein_id="AGM46366.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGSRRAL"
CDS 3187..>3531
/codon_start=1
/product="minor capsid protein"
/protein_id="AGM46364.1"
/translation="MAGAFFAGLAFDVLGSGLGSVINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTR"
ORIGIN
1 aacactgtca tatgtgccac ccaggggagt gaaggagagg ctacacttga aggtggtgac
61 aacaagggga cgtactgtgg tgcaccaatc ctaggcccag ggagtgcccc aacacttagc
121 accaagacca aattctggag atcgtccaca gcatcactcc cacctggcac ctatgaacca
181 gcctatcttg gtggcaagga ccctagggtc aagggtggtc cttcactgca gcaagtcatg
241 agggaacagt tgaagccatt cacagagccc aggggcaagc caccaaaacc aagtgtatta
301 gaagctgcca agaagaccat catcaatgtc cttgagcaaa caattgatcc acctgagaaa
361 tggtcgttcg cacaagcttg cgcgtccctt gacaagacca cttccagtgg tcatccgcac
421 cacatgcgga aaaacgactg ctggaacggg gagtccttca caggcaagct ggcagaccag
481 gcttccaagg ccaacctgat gtttgaagaa gggaagaaca tgaccccagt ctacacagct
541 gcgctcaagg atgagttagt taaaactgac aaaatttatg gtaagatcaa gaagcggctt
601 ctctggggct cggacttggc gaccatgatc cggtgtgctc gagcattcgg aggcctaatg
661 gatgagctca aagcacactg tgtcacactt cctattagag ttggcatgaa tatgaatgag
721 gatggcccca tcatcttcga gaggcattcc aggtacacat atcactatga tgctgattac
781 tctcgatggg attcaacaca acagagagcc gtgttggcag cagctctaga aatcatggtt
841 aaattctccc cagaaccaca cttggctcag gtagtcgcgg aggaccttct ttctcctagc
901 gtggtggacg tgggcgactt cacaatatca atcaacgagg gtcttccctc tggggtgccc
961 tgcacctccc aatggaactc catcgcccac tggcttctca ctctctgtgc gctctctgaa
1021 gtcacaaacc tgtcccctga caccatacag gctaactccc tcttctcttt ttatggtgat
1081 gatgaaattg ttagcacaga cataaaattg gacccagaaa aattgacagc aaagctcaga
1141 gaatatgggt taaaaccaac ccgccctgac aaaactgaag gaccccttgt catctctgaa
1201 gacctgaatg gcctaacttt cctgcggaga actgtgaccc gcgacccagc tggttggttt
1261 ggaaaactgg agcagagttc aatactcagg caaatgtact ggactagggg tcccaaccat
1321 ggagacccat ctgaaacaat gattccacac tcccaaagac ccatacaatt gatgtcccta
1381 ctgggagagg ccgctctcca cggcccagca ttttacagca aaatcagcaa attggtcatt
1441 gcagagctaa aagaaggtgg catggatttt tacgtgccca gacgagagcc aatgttcaga
1501 tggatgagat tctcagatct gagcacgtgg gagggcggtc gcaatctggc tcccagtttt
1561 gtgaatgaag atggcgtcga gtgacgccaa cccatctgat gggtccacag ccaaccttgt
1621 cccagaggtc aacaatgagg ttatggcttt ggagcccgta gttggtgccg ccattgcggc
1681 acctgtagcg ggccaacaaa atgtaattga cccctggatt agaaacaatt ttgtacaagc
1741 ccctggtgga gagtttacag tatcccctag aaacgctcca ggtgaaatac tatggagcgc
1801 gcccttaggc cctgatttga atccctacct ttcccatttg gccagaatgt acaatggtta
1861 tgcaggtggt tttgaagtgc aggtaatcct cgcggggaac gcgttcaccg ccgggaaaat
1921 catatttgca gcagtcccac caaatttccc aactgaaggt ttgagcccca gccaggtcac
1981 tatgttcccc cacataatag tagatgttag gcaattggaa cctgtgttga ttcccttacc
2041 cgatgttagg aataatttct accattataa tcaatcaaat gaccccacca tcaaattgat
2101 agcaatgttg tacacaccac ttagggctaa taatgccggg gacgatgtct tcacagtctc
2161 ttgtcgagtt ctcacgagac catcccccga ttttgatttc atatttttgg tgccacccac
2221 agttgaatca agaactaaac cattctctgt cccagtttta actgttgagg agatgaccaa
2281 ttcaaggttc cccattcctt tggaaaagtt gttcacgggt cccagtagtg cctttgttgt
2341 tcaaccacaa aacggcaggt gcacgacgga tggcgtactc ctaggtacta cccaactgtc
2401 ccccgtcaac atctgcacct tcagagggga tgtcacccat attccaggca gtcgcaacta
2461 cacaatgaat ttggcctccc aaaattggaa cagttacgat ccaacagaag aaatcccagc
2521 ccccctagga actccagatt tcgtggggaa gattcaaggt gtgctcaccc aaaccacaag
2581 gacaaatggc tcgacccgcg gccacaaagc tacagtgtac actgggagcg ccgacttttc
2641 tccaaaactg ggtagagttc aatttgccac tgacacagac aatgattttg aaactaacca
2701 aaacacaaag ttcaccccag tcggtgttat ccaggatggt agtaccaccc cccgaaatga
2761 accccaacaa tgggtgctcc caagttactc aggcagaaac attcacaatg tgcacctggc
2821 ccccgctgta gcccccactt tcccgggcga gcagctcctc ttcttcagat ctactatgcc
2881 cggatgcagc gggtacccca acatggactt ggactgtctg ctcccccagg aatgggtgca
2941 atatttctac caggaggcag ccccagcaca atctgatgtg gctctgctaa gatttgtgaa
3001 tccggacaca ggtagggttt tgtttgagtg taagcttcat aaatcaggct atgttacagt
3061 ggctcacact ggccaacatg atttggttat cccccccaat ggttatttta gatttgattc
3121 ctgggtcaac cagttttaca cacttgcccc catgggaaat gggacgggga gtagacgtgc
3181 attataatgg ccggagcttt ctttgctgga ttggcatttg acgtccttgg ctctggactt
3241 ggttccgtaa tcaatgctgg ggctggggcc atcaaccaaa aagttgaatt tgaaaataac
3301 agaaaattgc aacaagcttc cttccaattt agtagcaatc tacaacaggc ttcctttcaa
3361 catgacaaag agatgctcca agcacaaatt gaggccacca aaaagttgca acaggaaatg
3421 atgagagtta aacaagcaat gctcctagag ggtggattct ctgagacaga tgcagcccgt
3481 ggggcaatca acgcccccat gacaaaaact ttggactgga gcggaacaag g
//