Typing tool
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Typing tool
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Complete norovirus genomes
| JX439820 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..1584
ORF2: 1565..3187
ORF3: 3187..3531
LOCUS JX439820 3531 bp RNA linear VRL 31-JUL-2013
DEFINITION Norovirus Hu/GII/Seoul1033/KOR/2010 nonstructural protein gene,
partial cds; major capsid protein gene, complete cds; and minor
capsid protein gene, partial cds.
ACCESSION JX439820
VERSION JX439820.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Seoul1033/KOR/2010
ORGANISM Norovirus Hu/GII/Seoul1033/KOR/2010
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3531)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE The recombinant origin of emerging humannorovirus GII.4/2008
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3531)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory
Medicine, Sanggye Paik Hospital, Inje University College of
Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
Korea (South Korea)
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3531
/organism="Norovirus Hu/GII/Seoul1033/KOR/2010"
/mol_type="genomic RNA"
/isolate="Hu/GII/Seoul1033/KOR/2010"
/host="Homo sapiens"
/db_xref="taxon:1336077"
CDS <1..1584
/codon_start=1
/product="nonstructural protein"
/protein_id="AGM46358.1"
/translation="NTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPTLSTKTK
FWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPRPSVLEA
AKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHVRKNDCWNGESFTGKLADQ
ASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGG
LMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAAL
EIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLT
LCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKT
EGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIPH
SQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLS
TWEGVRNLAPSFVNENGVE"
CDS 1565..3187
/codon_start=1
/product="major capsid protein"
/protein_id="AGM46359.1"
/translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHISSSRNYTMNLASQNWSSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFSPKLGRVQFDTDTDNDFETNQNTKFTPVGVIQDG
STTYRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3187..>3531
/codon_start=1
/product="minor capsid protein"
/protein_id="AGM46360.1"
/translation="MAGAFFAGLASDVLGSGLGSLISAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTR"
ORIGIN
1 aacactgtca tatgtgccac ccaggggagt gaaggagagg ctacacttga aggtggtgac
61 aacaagggga catactgtgg tgcaccaatc ctaggcccag ggagtgcccc aacacttagc
121 accaagacca aattctggag atcgtccaca gcatcactcc cacctggcac ctatgaacca
181 gcctatcttg gtggcaagga ccctagagtc aagggtggcc cttcactaca gcaagtcatg
241 agggaacagt tgaagccatt cacagagcca aggggcaagc caccaagacc aagtgtatta
301 gaagctgcca agaagaccat catcaatgtc cttgagcaaa caattgatcc acctgagaaa
361 tggtcgttcg cacaagcctg cgcgtccctt gacaagacca cttccagtgg tcatccgcac
421 cacgtgcgga aaaacgactg ctggaacggg gagtccttca caggcaagct ggcagaccag
481 gcttccaagg ccaacctgat gtttgaagaa gggaagaaca tgaccccagt ctacacagct
541 gcgctcaagg atgagttggt taaaactgac aaaatttatg gtaagatcaa gaagaggctt
601 ctctggggct cggacttggc gaccatgatc cggtgtgctc gagcattcgg aggcctaatg
661 gatgaactca aagcacactg tgtcacactt cccattagag ttggcatgaa tatgaatgag
721 gatggcccca tcatcttcga gaggcattcc aggtacacat atcactatga tgctgattac
781 tctcgatggg attcaacaca acagagagcc gtgttggcag cagctctaga aatcatggtt
841 aaattctccc cagagccaca tttggctcag gtagtcgcgg aagaccttct ttctcctagc
901 gtggtggacg tgggcgactt cacaatatca atcaacgagg gtcttccctc tggggtgccc
961 tgcacctccc aatggaactc catcgcccac tggcttctca ctctctgtgc gctctctgaa
1021 gtcacaaacc tatcccctga taccatacag gctaactccc tcttctcttt ttatggtgat
1081 gatgaaattg ttagcacaga cataaaattg gacccagaga aattgacagc aaagctcaga
1141 gaatatgggc taaaaccaac ccgccctgac aaaactgaag gaccccttgt catctctgaa
1201 gacctgaatg gcctaacttt cctgcggaga actgtgaccc gcgacccagc tggttggttt
1261 ggaaaactgg agcagagttc aatactcagg caaatgtact ggactagggg tcccaaccat
1321 ggagacccat ctgaaacaat gattccacac tcccaaagac ccatacaatt gatgtcccta
1381 ctgggggagg ccgctctcca cggcccagca ttttacagca aaatcagcaa attggtcatt
1441 gcagagctaa aagaaggtgg catggatttt tacgtgccca gacaagagcc aatgttcaga
1501 tggatgagat tctcagatct gagcacgtgg gagggcgttc gcaatctggc tcccagtttt
1561 gtgaatgaaa atggcgtcga atgacgccaa cccatctgat gggtccacag ccaacctcgt
1621 cccagaggtc aacaatgagg ttatggcttt ggagcccgta gttggtgccg ccattgcggc
1681 acctgtagcg ggccaacaaa atgtaattga cccctggatt agaaacaatt ttgtacaagc
1741 ccctggtgga gagtttacag tatcccctag aaacgctcca ggtgaaatac tatggagcgc
1801 gcccttaggc cctgatttga atccctacct ttcccatttg gccagaatgt acaatggtta
1861 tgcaggtggt tttgaagtgc aggtaatcct cgcggggaac gcgttcaccg ccgggaaaat
1921 catatttgca gcagtcccac cgaatttccc gactgaaggt ttgagcccca gccaggtcac
1981 tatgttcccc cacataatag tagatgttag gcaattggaa cctgtgttga tccccttacc
2041 cgatgttagg aataatttct accattataa tcaatcaaat gaccccacca tcaaattgat
2101 agccatgttg tacacaccac ttagggctaa taatgccggg gacgatgtct tcacagtttc
2161 ttgtcgagtt ctcacgagac catcccccga ttttgatttc atatttttgg tgccacccac
2221 agttgaatca agaactaaac cattctctgt cccagtttta actgttgagg agatgaccaa
2281 ttcaaggttc cccattcctt tggaaaagtt gttcacgggc cccagtagtg cctttgttgt
2341 tcaaccacaa aacggcaggt gcacgactga tggcgtgctc ctaggtacta cccaactgtc
2401 tcctgtcaac atctgcacct tcagagggga tgtcacccat atttcaagca gtcgtaacta
2461 cacaatgaat ttggcctccc aaaattggag cagttacgat ccaacagaag aaatcccagc
2521 ccctctagga actccagatt tcgtggggaa gattcaaggt gtactcaccc aaaccacaag
2581 gacagatggc tcgacccgcg gccacaaagc tacagtgtac actgggagcg ccgacttttc
2641 tccaaaactg ggtagagttc aatttgacac tgacacagac aatgattttg aaactaacca
2701 aaacacaaag ttcaccccag tcggtgttat ccaggatggt agtactacct accgaaatga
2761 accccaacaa tgggtgctcc caagttactc aggcagaaac actcataatg tgcacctggc
2821 ccccgctgta gcccccactt tcccgggcga gcagctcctc ttcttcagat ctactatgcc
2881 cggatgcagc gggtacccca acatggattt ggactgtctg ctcccccagg aatgggtgca
2941 gtacttctac caggaggcag ccccagcaca atctgatgtg gctctgttaa gatttgtgaa
3001 cccagacaca ggtagggttt tgtttgagtg taagcttcat aaatcaggct atgttacagt
3061 ggctcacact ggccagcatg atttggttat cccccccaat ggttatttta gatttgattc
3121 ctgggtcaac cagttctaca cacttgcccc catgggaaat gggacggggc gtagacgtgc
3181 attataatgg ctggagcttt ctttgctgga ttggcatctg acgtccttgg ctctggactt
3241 ggttccctaa tcagtgctgg ggctggggcc atcaaccaaa aagttgaatt tgaaaataac
3301 agaaaattgc aacaggcttc cttccaattt agtagcaatc tacaacaggc ctcctttcaa
3361 catgacaaag agatgctcca agcacaaatt gaggccacca aaaagttgca acaggaaatg
3421 atgagagtta aacaagcaat gctcctagag ggtggattct ctgagacaga tgcagcccgt
3481 ggggcaatta acgcccccat gacaaaaact ttggactgga gcggaacaag g
//