Typing tool
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Typing tool
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Complete norovirus genomes
| JX439818 | GII.4 Apeldoorn | |
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| GII.P4 Apeldoorn |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS JX439818 7537 bp RNA linear VRL 31-JUL-2013
DEFINITION Norovirus Hu/GII/Seoul1367/KOR/2010, complete genome.
ACCESSION JX439818
VERSION JX439818.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Seoul1367/KOR/2010
ORGANISM Norovirus Hu/GII/Seoul1367/KOR/2010
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7537)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE The recombinant origin of emerging humannorovirus GII.4/2008
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7537)
AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory
Medicine, Sanggye Paik Hospital, Inje University College of
Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
Korea (South Korea)
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7537
/organism="Norovirus Hu/GII/Seoul1367/KOR/2010"
/mol_type="genomic RNA"
/isolate="Hu/GII/Seoul1367/KOR/2010"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1336100"
/geo_loc_name="South Korea"
/collection_date="24-Nov-2010"
/note="genotype: GII"
CDS 5..5104
/codon_start=1
/product="nonstructural protein"
/protein_id="AGM46352.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELIKNIPPPPPNGEDDIVVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
FARVELTPLSLYWRPVYTPQYLISPDALKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDLIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM
PELKQALKNISIKKCQIVYSGSTYTLESDGKGNVKVDRVQSASVQTNNELAGALHHLR
CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQNLWSKPQVENTEETTSKDGC
PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVSFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVATGVHTAAARVGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGRRNLAPSFVNEDGVE"
CDS 5085..6707
/codon_start=1
/product="major capsid protein"
/protein_id="AGM46353.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG
DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6707..7513
/codon_start=1
/product="minor capsid protein"
/protein_id="AGM46354.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGHFSTPQPSGALPGRANLRAAVPAWGSSSTSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARARSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 gtgaatgaag atggcctcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt tcaaacgagc
121 cctcggggcg cggcctaaac agcctccccc gagggaaata ccacaaagac ccccacgacc
181 acccactcca gaactgatta aaaacatccc ccctccccca cccaacggag aggatgacat
241 agtggtttct tatagtgtca aagatggtgt ctctggtttg cctgatcttt ccaccgtcag
301 gcaaccagaa gaatctaata cggccttcag tgtccctcca ctcaatcaga gggagaatag
361 agatgctaag gagccactga ctggaacaat cctggaaatg tgggatggag aaatctacca
421 ttatggcctg tatgtagagc gaggtcttgt gctaggtgtg cacaaaccac cagctgccat
481 cagcttcgct agggtcgaac taacaccact ttccttgtac tggagacctg tgtatactcc
541 ccagtacctc atctctccag acgctctcaa gaaactacac ggagagacgt tcccctacac
601 agcctttgac aacaactgct atgccttttg ttgttgggtt ctggacctaa acgactcgtg
661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa
721 taggaaaccc ctccccacta tggatgactc caagttaaag aaggtagcta acatattcct
781 gtgtgcactg tcttcgctat tcaccaggcc tataaaagat ttaataggga agctaaggcc
841 tcttaacatc ctcaacatct tggcctcatg tgattggact tttgcaggca tagttgagtc
901 cttgatactc ttggcagaac tcttcggagt tttctggaca cccccagatg tgtctgcgat
961 gattgccccc ttactcggtg attacgaact acaaggacct gaggaccttg cagtagagct
1021 cgtccctgta gtgatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg
1081 gaaaatgttg tcatctgctg catccacctt gagagcttgt aaagatcttg gtgcatatgg
1141 gctagagatc ctaaagttgg tcatgaagtg gttcttcccg aagaaagagg aagcaaatga
1201 actggctata gtgagatcca tcgaggatgc agtcctggat ctcgaggcaa tcgaaaacaa
1261 ccatatgacc accttgctca aagacaagga cagtctggca acctacatga gaacccttga
1321 ccttgaggag gagaaagcca ggaaactctc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgt tctctagtgc atcgagcgaa
1441 ggaggaactt tctagcagac caagaccggt agtgttgatg atatcaggca gaccaggaat
1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc ttacaggaga
1561 ccagcgtgta ggcctcgtcc cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga
1621 gagggtcgtt ctatgggacg actatggaat gagcaaccct atccacgatg ccctcagatt
1681 gcaagaactc gctgacactt gccccctcac cctaaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagcgatg tcatcattat caccactaat ctggctaacc cagcaccact
1801 ggactatgtc aactttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc
1861 ccctgaggtc gaaaaggcga agcgtgactt cccaggccaa cccgacatgt ggaagaacgc
1921 cttcagtcct gatttctcac acataaaact aacattggct ccacagggtg gcttcgacaa
1981 gaacgggaac accccacacg ggaagggcgt catgaagact ctcaccaccg gctcccttat
2041 tgcccgggca tcagggctac tccatgagag gctagatgaa tttgaactac agggcccaac
2101 tctcaccacc ttcaactttg atcgcaataa agtgcttgcc tttagacaac ttgctgctga
2161 aaataaatat gggttgatgg acacaatgaa agttgggagg cagctcaagg atgtcagaac
2221 aatgccagag ctcaagcaag cactcaagaa tatttcaatc aagaagtgcc agatagtgta
2281 tagtggtagc acctacacac ttgagtctga tggcaagggc aatgtgaagg ttgacagagt
2341 tcaaagcgcc tccgtgcaga ccaacaatga gctggctggc gccctacacc atctaaggtg
2401 cgccagaata agatactatg ttaggtgtgt ccaggaggcc ctgtattcca tcatccagat
2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aaaacctatg
2521 gtctaagcca caagtggaaa atacagagga gactactagc aaggacgggt gtccaaaacc
2581 caaagatgat gaggagttcg tcatttcatc cgacgacatc aaaactgagg gcaagaaagg
2641 gaaaaacaag actggtcgcg gcaagaagca cacagccttc tcaagcaaag gtctcagtga
2701 tgaagaatac gatgaataca agagaattag agaagaaagg aacggtaagt actccataga
2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgactga
2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttta ggccaacaag
2881 gaaacaacgc aaggaggaaa gagcttctct cggtttagtc acaggttctg aaattaggaa
2941 aagaaatcca gatgatttca aacccaaagg gaaactgtgg gctgacgatg acagaagtgt
3001 ggactacaat gagaaactca gttttgaagc cccaccaagc atctggtcga gaatagtcag
3061 ctttggttca ggctgggggt tctgggtctc ccccagtttg ttcataacat caacccatgt
3121 cataccccag ggagcaaagg agttctttgg agtccccatc aaacaaattc aggtacacaa
3181 gtcaggcgaa ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacgggtat
3241 gatcttagaa gaaggtgcac ccgagggcac cgtggtcaca ctgctcatca aaaggcccac
3301 tggagaactc atgcccctag cagctaggat ggggacccat gcaaccatga aaatccaagg
3361 acgcactgtt ggaggtcaaa tgggcatgct tctgacagga tccaacgcca aaagcatgga
3421 tctgggtacc acaccaggtg attgtggctg tccctacatc tacaagagag gaaatgacta
3481 tgtggccact ggagtccaca cggctgccgc tcgtgtgggc aacactgtca tatgtgccac
3541 ccaggggagt gagggagagg ctacacttga aggtggtgac aataaaggga catactgtgg
3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaagacca aattctggag
3661 atcgtccaca gcaccactcc cacctggcac ctatgaacca gcctatcttg gtggcaagga
3721 ccccagagtc aagggtggcc cttcactaca gcaggtcatg agggatcagc tgaagccatt
3781 cacagagccc aggggcaagc caccaaagcc aagtgtgttg gaagctgcta agaaaaccat
3841 catcaatgtc cttgaacaaa ctattgatcc acctgagaaa tggtcgttcg cacaagcttg
3901 cgcgtccctt gacaagacca cctccagtgg ccatccgcat cacatgcgga aaaatgactg
3961 ctggaacggg gagtccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat
4021 gtttgaagaa gggaagaaca tgacgccagt ctatacagct gcgcttaagg acgaattagt
4081 taaaactgac aaaatttatg gcaagatcaa aaagaggctt ctctggggct cggatttggc
4141 gaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcgcactg
4201 tgtcacactt cccattagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga
4261 gaggcactct aggtacacat accactatga tgctgattac tctcgatggg attcaacaca
4321 acagagagcc gtgttggcag cagctctaga aatcatggtt aagttctccc cagaaccaca
4381 tttggcccag gtagtcgcag aagaccttct ttctcctagc gtggtggacg tgggtgactt
4441 cacaatatca attaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc
4501 catcgcccac tggcttctca ccctctgtgc gctctctgaa gttacaaatt tgtctcctga
4561 caccatacaa gctaattccc tcttctcttt ttatggtgat gatgaaattg ttagcacaga
4621 cataaaattg gatccagaaa agttgacagc aaaactcagg gaatatgggt taaaaccaac
4681 ccgtcccgac aaaactgaag gaccccttgc catctctgaa gacttgaatg gcctgacttt
4741 cctacggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagttc
4801 aatactcagg caaatgtact ggactagggg ctccaaccat gaagacccat ctgaaacaat
4861 gattccacac tcccaaaggc ccatacaact gatgtcccta ctgggggagg ccgcgctcca
4921 cggcccagca ttctacagca agatcagcaa gttagtcatt gcagagctaa aagaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggccggc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 gtgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gttggtgccg ctattgcggc acctgtagcg ggccaacaaa
5221 atgtaattga cccctggatt agaaacaatt ttgtacaagc ccctggtgga gagttcacag
5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttaggc cctgatttga
5341 atccctacct ttcccatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc
5401 aggtagtcct cgcggggaac gcgttcaccg ccggaaaaat catatttgca gcagtcccac
5461 caaatttccc aactgaaggc ttgagcccca gccaggtcac tatgttcccc cacataatag
5521 tagatgttag gcaattggaa cctgtgttga tccccttacc cgatgttagg aataatttct
5581 atcactacaa tcaatcaaat gaccccacca tcaaattgat agccatgttg tatacaccac
5641 ttagggctaa taatgctggg gacgatgtct tcacagtttc ttgtcgggtt ctcacgagac
5701 catcccccga ttttgacttc atatttttag taccacccac agttgagtca agaactaaac
5761 cattctctgt cccaatttta actgttgagg agatgaccaa ttcaagattc cccattcctt
5821 tggaaaagct gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aacggcagat
5881 gcacgactga tggcgtgctc ctaggtacca ctcaactgtc tcctgtcaac atctgcacct
5941 tcagagggga tgtcacccat atcacaggta gtcgtaacta cacaatgaat ttggctactc
6001 aaaattggaa cagttatgac ccaacagaag aaatcccagc ccctctagga actccagatt
6061 tcgtggggaa gattcaaggt gtgctcaccc aaaccacaag ggcagatggc tcgacccgcg
6121 gccacaaagc tacagtgtac actgggagcg ccgattttgc tccaaaactg ggtagagttc
6181 aatttgccac tgacacagac aatgattttg atgctaacca aaacacaaag ttcaccccag
6241 tcggtgtcat ccaggatggt gacactgccc accgaaatga accccaacaa tgggtgctcc
6301 caagttactc aggcagaaat agtcacaatg tgcacctggc ccccgctgta gcccccactt
6361 ttccgggtga gcaacttctc ttcttcagat ccactatgcc cggatgcagc gggtacccca
6421 acatggattt ggactgcctg ctcccccagg aatgggtgca gtatttctat caagaggcag
6481 ccccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttt
6541 tgtttgagtg taaacttcat aaatcaggct atgttacagt ggctcacacc ggtcaacatg
6601 atttggttat cccccccaat ggttatttta gatttgattc ctgggtcaac cagttctaca
6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc attataatgg ctggagcttt
6721 ctttgctgga ttggcatctg acgtccttgg ctccggactt ggttctctga tcaatgccgg
6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaataac agaaaattgc aacaagcttc
6841 cttccaattt agcagtaatc tacaacaggc ttcctttcaa catgataaag agatgctcca
6901 agcacaaatt gaggccacca aaaagttgca acaggaaatg atgagagtta aacaggcaat
6961 gctcctagag ggtggattct ctgagacaga tgcagcccgt ggggcaatca acgcccccat
7021 gacaaaggct ttggactgga gtgggacaag gtactgggct cccgatgcta ggaccacaac
7081 atacaatgca ggccactttt ccacccctca accctcgggg gcactgccag gaagagctaa
7141 tcttagggct gctgtccccg cttggggctc ctccagcaca tcttctaact cttctactgc
7201 cacttctgtg tactcaaatc aaactacttc aacgagactt ggttctacag ctggttctgg
7261 taccagtgtc tcgagcctcc cgtcaactgc aagggctagg agctgggttg aggatcaaaa
7321 taggaatttg tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc
7381 tagcagatcc tctagccaag gcacagtctc aaccgtgccc aaagaagttt tggactcctg
7441 gactggcgct ttcaatacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga
7501 gtcacgggcg taatgtgaaa agacaaattt gattata
//