Typing tool
|
Complete norovirus genomes
JX439818 | GII.4 New Orleans | ||
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GII.P4 Yerseke |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS JX439818 7537 bp RNA linear VRL 31-JUL-2013 DEFINITION Norovirus Hu/GII/Seoul1367/KOR/2010, complete genome. ACCESSION JX439818 VERSION JX439818.1 KEYWORDS . SOURCE Norovirus Hu/GII/Seoul1367/KOR/2010 ORGANISM Norovirus Hu/GII/Seoul1367/KOR/2010 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7537) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE The recombinant origin of emerging humannorovirus GII.4/2008 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7537) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE Direct Submission JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory Medicine, Sanggye Paik Hospital, Inje University College of Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of Korea (South Korea) COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7537 /organism="Norovirus Hu/GII/Seoul1367/KOR/2010" /mol_type="genomic RNA" /isolate="Hu/GII/Seoul1367/KOR/2010" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1336100" /country="South Korea" /collection_date="24-Nov-2010" /note="genotype: GII" CDS 5..5104 /codon_start=1 /product="nonstructural protein" /protein_id="AGM46352.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELIKNIPPPPPNGEDDIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS FARVELTPLSLYWRPVYTPQYLISPDALKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDLIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM PELKQALKNISIKKCQIVYSGSTYTLESDGKGNVKVDRVQSASVQTNNELAGALHHLR CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQNLWSKPQVENTEETTSKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVSFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVATGVHTAAARVGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGRRNLAPSFVNEDGVE" CDS 5085..6707 /codon_start=1 /product="major capsid protein" /protein_id="AGM46353.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVVLAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6707..7513 /codon_start=1 /product="minor capsid protein" /protein_id="AGM46354.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGHFSTPQPSGALPGRANLRAAVPAWGSSSTSS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARARSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 gtgaatgaag atggcctcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt tcaaacgagc 121 cctcggggcg cggcctaaac agcctccccc gagggaaata ccacaaagac ccccacgacc 181 acccactcca gaactgatta aaaacatccc ccctccccca cccaacggag aggatgacat 241 agtggtttct tatagtgtca aagatggtgt ctctggtttg cctgatcttt ccaccgtcag 301 gcaaccagaa gaatctaata cggccttcag tgtccctcca ctcaatcaga gggagaatag 361 agatgctaag gagccactga ctggaacaat cctggaaatg tgggatggag aaatctacca 421 ttatggcctg tatgtagagc gaggtcttgt gctaggtgtg cacaaaccac cagctgccat 481 cagcttcgct agggtcgaac taacaccact ttccttgtac tggagacctg tgtatactcc 541 ccagtacctc atctctccag acgctctcaa gaaactacac ggagagacgt tcccctacac 601 agcctttgac aacaactgct atgccttttg ttgttgggtt ctggacctaa acgactcgtg 661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa 721 taggaaaccc ctccccacta tggatgactc caagttaaag aaggtagcta acatattcct 781 gtgtgcactg tcttcgctat tcaccaggcc tataaaagat ttaataggga agctaaggcc 841 tcttaacatc ctcaacatct tggcctcatg tgattggact tttgcaggca tagttgagtc 901 cttgatactc ttggcagaac tcttcggagt tttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactcggtg attacgaact acaaggacct gaggaccttg cagtagagct 1021 cgtccctgta gtgatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg 1081 gaaaatgttg tcatctgctg catccacctt gagagcttgt aaagatcttg gtgcatatgg 1141 gctagagatc ctaaagttgg tcatgaagtg gttcttcccg aagaaagagg aagcaaatga 1201 actggctata gtgagatcca tcgaggatgc agtcctggat ctcgaggcaa tcgaaaacaa 1261 ccatatgacc accttgctca aagacaagga cagtctggca acctacatga gaacccttga 1321 ccttgaggag gagaaagcca ggaaactctc aaccaagtct gcttcacctg acatcgtggg 1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgt tctctagtgc atcgagcgaa 1441 ggaggaactt tctagcagac caagaccggt agtgttgatg atatcaggca gaccaggaat 1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc ttacaggaga 1561 ccagcgtgta ggcctcgtcc cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga 1621 gagggtcgtt ctatgggacg actatggaat gagcaaccct atccacgatg ccctcagatt 1681 gcaagaactc gctgacactt gccccctcac cctaaactgt gacaggattg agaacaaagg 1741 aaaggtcttt gacagcgatg tcatcattat caccactaat ctggctaacc cagcaccact 1801 ggactatgtc aactttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc 1861 ccctgaggtc gaaaaggcga agcgtgactt cccaggccaa cccgacatgt ggaagaacgc 1921 cttcagtcct gatttctcac acataaaact aacattggct ccacagggtg gcttcgacaa 1981 gaacgggaac accccacacg ggaagggcgt catgaagact ctcaccaccg gctcccttat 2041 tgcccgggca tcagggctac tccatgagag gctagatgaa tttgaactac agggcccaac 2101 tctcaccacc ttcaactttg atcgcaataa agtgcttgcc tttagacaac ttgctgctga 2161 aaataaatat gggttgatgg acacaatgaa agttgggagg cagctcaagg atgtcagaac 2221 aatgccagag ctcaagcaag cactcaagaa tatttcaatc aagaagtgcc agatagtgta 2281 tagtggtagc acctacacac ttgagtctga tggcaagggc aatgtgaagg ttgacagagt 2341 tcaaagcgcc tccgtgcaga ccaacaatga gctggctggc gccctacacc atctaaggtg 2401 cgccagaata agatactatg ttaggtgtgt ccaggaggcc ctgtattcca tcatccagat 2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aaaacctatg 2521 gtctaagcca caagtggaaa atacagagga gactactagc aaggacgggt gtccaaaacc 2581 caaagatgat gaggagttcg tcatttcatc cgacgacatc aaaactgagg gcaagaaagg 2641 gaaaaacaag actggtcgcg gcaagaagca cacagccttc tcaagcaaag gtctcagtga 2701 tgaagaatac gatgaataca agagaattag agaagaaagg aacggtaagt actccataga 2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgactga 2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttta ggccaacaag 2881 gaaacaacgc aaggaggaaa gagcttctct cggtttagtc acaggttctg aaattaggaa 2941 aagaaatcca gatgatttca aacccaaagg gaaactgtgg gctgacgatg acagaagtgt 3001 ggactacaat gagaaactca gttttgaagc cccaccaagc atctggtcga gaatagtcag 3061 ctttggttca ggctgggggt tctgggtctc ccccagtttg ttcataacat caacccatgt 3121 cataccccag ggagcaaagg agttctttgg agtccccatc aaacaaattc aggtacacaa 3181 gtcaggcgaa ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacgggtat 3241 gatcttagaa gaaggtgcac ccgagggcac cgtggtcaca ctgctcatca aaaggcccac 3301 tggagaactc atgcccctag cagctaggat ggggacccat gcaaccatga aaatccaagg 3361 acgcactgtt ggaggtcaaa tgggcatgct tctgacagga tccaacgcca aaagcatgga 3421 tctgggtacc acaccaggtg attgtggctg tccctacatc tacaagagag gaaatgacta 3481 tgtggccact ggagtccaca cggctgccgc tcgtgtgggc aacactgtca tatgtgccac 3541 ccaggggagt gagggagagg ctacacttga aggtggtgac aataaaggga catactgtgg 3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaagacca aattctggag 3661 atcgtccaca gcaccactcc cacctggcac ctatgaacca gcctatcttg gtggcaagga 3721 ccccagagtc aagggtggcc cttcactaca gcaggtcatg agggatcagc tgaagccatt 3781 cacagagccc aggggcaagc caccaaagcc aagtgtgttg gaagctgcta agaaaaccat 3841 catcaatgtc cttgaacaaa ctattgatcc acctgagaaa tggtcgttcg cacaagcttg 3901 cgcgtccctt gacaagacca cctccagtgg ccatccgcat cacatgcgga aaaatgactg 3961 ctggaacggg gagtccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat 4021 gtttgaagaa gggaagaaca tgacgccagt ctatacagct gcgcttaagg acgaattagt 4081 taaaactgac aaaatttatg gcaagatcaa aaagaggctt ctctggggct cggatttggc 4141 gaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcgcactg 4201 tgtcacactt cccattagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga 4261 gaggcactct aggtacacat accactatga tgctgattac tctcgatggg attcaacaca 4321 acagagagcc gtgttggcag cagctctaga aatcatggtt aagttctccc cagaaccaca 4381 tttggcccag gtagtcgcag aagaccttct ttctcctagc gtggtggacg tgggtgactt 4441 cacaatatca attaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc 4501 catcgcccac tggcttctca ccctctgtgc gctctctgaa gttacaaatt tgtctcctga 4561 caccatacaa gctaattccc tcttctcttt ttatggtgat gatgaaattg ttagcacaga 4621 cataaaattg gatccagaaa agttgacagc aaaactcagg gaatatgggt taaaaccaac 4681 ccgtcccgac aaaactgaag gaccccttgc catctctgaa gacttgaatg gcctgacttt 4741 cctacggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagttc 4801 aatactcagg caaatgtact ggactagggg ctccaaccat gaagacccat ctgaaacaat 4861 gattccacac tcccaaaggc ccatacaact gatgtcccta ctgggggagg ccgcgctcca 4921 cggcccagca ttctacagca agatcagcaa gttagtcatt gcagagctaa aagaaggtgg 4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggccggc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 gtgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gttggtgccg ctattgcggc acctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaacaatt ttgtacaagc ccctggtgga gagttcacag 5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttaggc cctgatttga 5341 atccctacct ttcccatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc 5401 aggtagtcct cgcggggaac gcgttcaccg ccggaaaaat catatttgca gcagtcccac 5461 caaatttccc aactgaaggc ttgagcccca gccaggtcac tatgttcccc cacataatag 5521 tagatgttag gcaattggaa cctgtgttga tccccttacc cgatgttagg aataatttct 5581 atcactacaa tcaatcaaat gaccccacca tcaaattgat agccatgttg tatacaccac 5641 ttagggctaa taatgctggg gacgatgtct tcacagtttc ttgtcgggtt ctcacgagac 5701 catcccccga ttttgacttc atatttttag taccacccac agttgagtca agaactaaac 5761 cattctctgt cccaatttta actgttgagg agatgaccaa ttcaagattc cccattcctt 5821 tggaaaagct gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aacggcagat 5881 gcacgactga tggcgtgctc ctaggtacca ctcaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccat atcacaggta gtcgtaacta cacaatgaat ttggctactc 6001 aaaattggaa cagttatgac ccaacagaag aaatcccagc ccctctagga actccagatt 6061 tcgtggggaa gattcaaggt gtgctcaccc aaaccacaag ggcagatggc tcgacccgcg 6121 gccacaaagc tacagtgtac actgggagcg ccgattttgc tccaaaactg ggtagagttc 6181 aatttgccac tgacacagac aatgattttg atgctaacca aaacacaaag ttcaccccag 6241 tcggtgtcat ccaggatggt gacactgccc accgaaatga accccaacaa tgggtgctcc 6301 caagttactc aggcagaaat agtcacaatg tgcacctggc ccccgctgta gcccccactt 6361 ttccgggtga gcaacttctc ttcttcagat ccactatgcc cggatgcagc gggtacccca 6421 acatggattt ggactgcctg ctcccccagg aatgggtgca gtatttctat caagaggcag 6481 ccccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttt 6541 tgtttgagtg taaacttcat aaatcaggct atgttacagt ggctcacacc ggtcaacatg 6601 atttggttat cccccccaat ggttatttta gatttgattc ctgggtcaac cagttctaca 6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc attataatgg ctggagcttt 6721 ctttgctgga ttggcatctg acgtccttgg ctccggactt ggttctctga tcaatgccgg 6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaataac agaaaattgc aacaagcttc 6841 cttccaattt agcagtaatc tacaacaggc ttcctttcaa catgataaag agatgctcca 6901 agcacaaatt gaggccacca aaaagttgca acaggaaatg atgagagtta aacaggcaat 6961 gctcctagag ggtggattct ctgagacaga tgcagcccgt ggggcaatca acgcccccat 7021 gacaaaggct ttggactgga gtgggacaag gtactgggct cccgatgcta ggaccacaac 7081 atacaatgca ggccactttt ccacccctca accctcgggg gcactgccag gaagagctaa 7141 tcttagggct gctgtccccg cttggggctc ctccagcaca tcttctaact cttctactgc 7201 cacttctgtg tactcaaatc aaactacttc aacgagactt ggttctacag ctggttctgg 7261 taccagtgtc tcgagcctcc cgtcaactgc aagggctagg agctgggttg aggatcaaaa 7321 taggaatttg tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc 7381 tagcagatcc tctagccaag gcacagtctc aaccgtgccc aaagaagttt tggactcctg 7441 gactggcgct ttcaatacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga 7501 gtcacgggcg taatgtgaaa agacaaattt gattata //