Typing tool
|
Complete norovirus genomes
JX439815 | GII.4 New Orleans | ||
---|---|---|---|
GII.P4 Hunter |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS JX439815 7538 bp RNA linear VRL 31-JUL-2013 DEFINITION Norovirus Hu/GII/Seoul1055/KOR/2010, complete genome. ACCESSION JX439815 VERSION JX439815.1 KEYWORDS . SOURCE Norovirus Hu/GII/Seoul1055/KOR/2010 ORGANISM Norovirus Hu/GII/Seoul1055/KOR/2010 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7538) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE The recombinant origin of emerging humannorovirus GII.4/2008 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7538) AUTHORS Han,T.H., Lam,T.T.Y., Pybus,O.G., Park,S.H. and Chung,J.Y. TITLE Direct Submission JOURNAL Submitted (31-JUL-2012) Department of Pediatrics and Laboratory Medicine, Sanggye Paik Hospital, Inje University College of Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of Korea (South Korea) COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7538 /organism="Norovirus Hu/GII/Seoul1055/KOR/2010" /mol_type="genomic RNA" /isolate="Hu/GII/Seoul1055/KOR/2010" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1336082" /country="South Korea" /collection_date="27-Apr-2010" /note="genotype: GII" CDS 5..5104 /codon_start=1 /product="nonstructural protein" /protein_id="AGM46343.1" /translation="MKMASNDASAAAVANSNNDTVKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELIKNIPPPPPNGEDDIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRESREAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LARVELTPLSLYWRPVYTPQYLISPDALKRLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTYLAREV AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM PELKQALKNISIKKCQIVYSGSTYTLESDGKGNVKVDRVQSASVQTNNELAGALHHLR CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQSLWSKPQVENTEETTSKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD YGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLAISEDLNGLTFLRRAVTRDPAGWFGKLEQSSILRQMYWTRGS NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGARNLAPSFVNEDGVE" CDS 5085..6707 /codon_start=1 /product="major capsid protein" /protein_id="AGM46344.1" /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6707..7513 /codon_start=1 /product="minor capsid protein" /protein_id="AGM46345.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGHFSTPQPSGALPGRANLRTAVPARGSSSISS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaata gcaacaacga 61 caccgtaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt tcaaacgagc 121 cctcggggcg cggcctaaac agcctccccc gagggaaata ccacaaagac ccccacgacc 181 acccactcca gaactgatca aaaatatccc ccctccccca cccaatggag aggatgacat 241 agtggtttct tatagcgtca aagatggtgt ctctggtttg cctgatcttt ccaccgtcag 301 gcaaccggaa gaatctaata cggccttcag tgtccctcca ctcaatcaga gggagagtag 361 agaagctaag gaaccactga ctggaacaat tttggaaatg tgggatggag aaatctatca 421 ctatggcctg tacgtagagc gaggtcttgt gctaggtgtg cacaaaccac cagctgccat 481 cagcctcgct agggtcgaac taacaccact ttccttgtac tggagacctg tgtatactcc 541 ccagtacctc atctctccag acgctctcaa gagactacac ggagagacgt tcccctacac 601 agcctttgac aacaactgct acgccttttg ttgttgggtc ctggacctaa acgactcgtg 661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa 721 taggaaaccc ctccccacta tggatgactc caagttaaag aaggtggcta acatattcct 781 gtgtgcattg tcttcgctat tcaccaggcc tataaaagat ataataggga agctaaggcc 841 tcttaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtggagtc 901 cttgatactc ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactcggtg actacgaact acagggacct gaggaccttg cagtggagct 1021 cgtccctgta gtgatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg 1081 aaaaatgttg tcatctgctg catccacctt gagagcttgt aaagatcttg gtgcatatgg 1141 gctagagatc ctaaagttgg ttatgaagtg gttcttcccg aagaaagagg aagcaaatga 1201 actggctata gtgagatcca tcgaggatgc agtcctggat ctcgaagcaa ttgaaaacaa 1261 ccatatgacc accttgctca aagacaaaga cagtctggca acctacatga aaacccttga 1321 ccttgaggag gagaaagcca ggaaactctc aaccaagtct gcttcacctg acatcgtggg 1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgt tctctggtgc atcgagcgaa 1441 ggaggaactt tctagcagac caagacctgt agtgttgatg atatcaggca gaccaggaat 1501 agggaagacc taccttgcca gagaagtggc taagagaatc gcagcctccc ttacaggaga 1561 ccagcgtgta ggcctcgtcc cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga 1621 gagggtcgtt ctatgggacg actatggaat gagcaatcct atccacgatg ccctcagatt 1681 gcaagaactc gctgacactt gtcccctcac cctaaactgt gacaggattg agaacaaagg 1741 aaaggtcttt gacagcgatg tcatcattat caccactaat ctggctaacc cagcaccact 1801 ggactatgtc aacttcgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc 1861 ccctgaggtc gaaaaggcga agcgtgactt cccaggccaa cccgacatgt ggaagaacgc 1921 cttcagtcct gatttctcac acataaaact aacattggct ccacagggtg gtttcgacaa 1981 gaacgggaac accccacacg ggaagggcgt catgaagact ctcaccaccg gctcccttat 2041 tgcccgggca tcagggctac tccatgagag gctagatgaa tttgaactac agggcccaac 2101 tctcaccact ttcaactttg atcgcaataa agtgcttgcc tttagacaac ttgctgctga 2161 aaacaaatat gggttgatgg acacaatgaa agttgggagg cagctcaagg atgtcagaac 2221 aatgccagag ctcaagcaag cactcaagaa tatttcaatc aagaagtgcc agatagtgta 2281 cagtggtagc acctacacac ttgagtctga tggcaagggt aatgtgaagg ttgacagagt 2341 tcaaagcgcc tccgtgcaga ccaacaatga gctggctggc gccctacacc atctaaggtg 2401 cgccagaata agatactatg tcaggtgtgt ccaggaggcc ctgtattcca tcatccagat 2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aaagcctatg 2521 gtctaagcca caagtggaaa atacagagga gactaccagc aaggacgggt gtccaaaacc 2581 caaagatgat gaggagttcg tcatttcatc cgacgacatc aagactgagg gcaagaaagg 2641 gaaaaacaag actggccgcg gtaagaagca cacagccttc tcaagcaaag gtctcagtga 2701 tgaagagtac gatgagtaca agaggattag agaagaaagg aatggtaagt actcaataga 2761 agagtacctt caagacaggg acaaatacta tgaggaggtg gccattgcca gggcgactga 2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca ggccaacaag 2881 gaaacaacgc aaggaggaaa gagcttctct cggtttagtc acaggttctg aaattaggaa 2941 aagaaatcca gatgatttca aacccaaggg gaaactgtgg gctgacgatg acagaagtgt 3001 ggactacaat gagaaactca gttttgaagc cccaccaagc atctggtcga ggatagtcaa 3061 ctttggttca ggttggggat tctgggtctc ccccagtttg ttcataacat caacccatgt 3121 cataccccag ggagcaaagg agttctttgg agtccccatc aaacaaattc aggtacataa 3181 gtcaggcgaa ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacgggcat 3241 gatcttagaa gaaggtgcac ccgagggcac cgtggttaca ctactcatca aaaggtccac 3301 tggggaactc atgcccctag cagctaggat ggggacccat gcaaccatga aaatccaagg 3361 acgcactgtt ggaggtcaaa tgggcatgct tctgacagga tccaacgcca aaagcatgga 3421 tctgggtacc acaccaggtg attatggctg tccctacatc tacaagagag gaaatgacta 3481 tgtggtcatt ggagtccaca cggctgccgc tcgtgggggc aacactgtca tatgtgccac 3541 ccaggggagt gagggagagg ctacacttga aggtggtgac aataaaggga catactgtgg 3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaagacca aattctggag 3661 atcgtccaca gcaccactcc cacctggcac ctatgaacca gcctatcttg gtggtaagga 3721 tcccagagtc aagggtgggc cttcactaca gcaggtcatg agggatcagc tgaagccatt 3781 cacagagccc aggggcaagc caccaaagcc aagtgtgttg gaagctgcta agaaaaccat 3841 catcaatgtc cttgagcaaa caattgatcc acctgagaaa tggtcgttcg cacaagcttg 3901 cgcgtccctt gataagacca cctccagtgg ccacccgcat cacatgcgga aaaacgactg 3961 ctggaacggg gagtccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat 4021 gtttgaagaa gggaagaaca tgacgccagt ctacacagct gcgcttaagg atgaattagt 4081 taaaactgac aaaatttatg gcaagatcaa gaagaggctt ctctggggct cggatttggc 4141 gaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcgcactg 4201 tgtcacactt cccattagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga 4261 gaggcactcc aggtacacgt accactatga tgctgattac tctcgatggg attcaacaca 4321 acagagagcc gtgttggcag cagctctaga aattatggtt aagttctccc cagaaccaca 4381 tttggcccag gtagtcgcag aggaccttct ttctcctagc gtggtggacg tgggtgactt 4441 cacaatatca attaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc 4501 catcgcccac tggcttctca ccctctgtgc gctctctgaa gttacaaact tgtctcctga 4561 caccatacaa gctaattccc tcttctcttt ttatggtgat gatgaaattg ttagcacaga 4621 cataaaattg gacccagaaa agttgacagc aaagctcagg gaatatgggt taaaaccaac 4681 ccgccccgac aaaactgaag gaccccttgc catctctgaa gacttgaatg gcctgacttt 4741 cttgcggaga gctgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagttc 4801 aatactcagg caaatgtact ggactagggg ttccaaccat gaagacccat ctgaaacaat 4861 gattccacac tcccaaagac ccatacaact gatgtcccta ctgggggagg ccgcactcca 4921 cggcccagca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg 4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgctc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 atgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gttggtgccg ccattgcggc gcctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaacaatt ttgtacaagc ccctggtgga gagtttacag 5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttaggc cctgatttga 5341 atccctacct ttcccatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc 5401 aggtaatcct cgcggggaac gcgttcaccg ccggaaaaat catatttgca gcagtcccac 5461 caaatttccc aactgaaggc ttgagcccca gccaggtcac tatgttcccc cacataatag 5521 tagatgttag gcaactggaa cctgtgttga tccccttacc cgatgttagg aataatttct 5581 atcactacaa tcaatcaaat gaccccacca tcaaattgat agccatgttg tatacaccac 5641 ttagggctaa taatgctggg gacgatgtct tcacagtttc ttgtcgggta ctcacgagac 5701 catcccccga ttttgatttc atatttctag tgccacccac agttgaatca agaactaaac 5761 cattctctgt cccaatttta actgttgagg agatgaccaa ttcaagattc cccattcctt 5821 tggaaaagct gttcacgggc cctagcagtg cctttgttgt tcaaccacaa aacggcaggt 5881 gcacgactga tggcgtgctc ctgggtacca cccaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccat attacaggta gtcgtaacta cacaatgaat ttggctactc 6001 aaaattggaa cagttatgac ccaacagaag aaatcccagc ccctctagga actccagatt 6061 tcgtgggaaa gatccaaggt gtgctcaccc aaaccacgag ggcagatggc tcgacccgtg 6121 gccacaaagc tacagtgtac actgggagcg ccgactttgc tccaaaactg ggtagagttc 6181 aatttgccac tgacacagac aatgattttg atgctaacca aaacacaaag ttcaccccag 6241 tcggtgtcat ccaggatggt gatactgccc accgaaatga accccaacaa tgggtgctcc 6301 caagttactc aggcagaaat agtcacaatg tgcacctggc ccccgctgta gcccccactt 6361 ttccgggcga gcaacttctc ttcttcagat ccactatgcc cggatgcagc gggtacccca 6421 acatggattt ggactgtctg cttccccagg aatgggtgca gtatttctat caagaggcag 6481 ccccagcaca atctgatgtg gcactgctaa gatttgtgaa tccagacaca ggtagggttt 6541 tgtttgagtg taagcttcat aaatcaggct atgttactgt ggctcacacc ggccaacatg 6601 atttggttat cccccccaat ggttatttca gatttgattc ctgggtcaac cagttctaca 6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc attataatgg ctggagcttt 6721 ctttgctgga ttggcatctg acgtccttgg atccggactt ggttctctga tcaatgccgg 6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaacaac agaaaattgc aacaagcttc 6841 cttccaattt agtagcaatc tacaacaggc ttcctttcaa catgataaag agatgctcca 6901 agcacaaatt gaggccacca aaaagttgca acaggaaatg atgagagtta aacaggcaat 6961 gctcctagag ggtggattct ctgagacaga tgcagcccgt ggggcaatca acgcccccat 7021 gacaaaggct ttggactgga gtgggacaag gtactgggct cccgatgcta ggactacaac 7081 atacaatgca ggccactttt ccactcctca accctcgggg gcactgccag gaagagctaa 7141 tcttaggact gctgtccccg ctcggggctc ctctagcata tcttctaact cttctactgc 7201 tacctctgtg tactcaaatc aaactacttc aacgagactt ggttctacag ctggttctgg 7261 taccagtgtc tcgagcctcc cgtcaactgc aaggactagg agttgggttg aggatcaaaa 7321 taggaatttg tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc 7381 tagcagatcc tctagccaag gcacagtctc aaccgtgccc aaagaagttt tggactcctg 7441 gactggcgct ttcaatacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga 7501 gtcacgggtg taatgtgaaa agacaaattt gattataa //