Typing tool
|
Complete norovirus genomes
JX126912 | GII.4 Farmington Hills | ||
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GII.P4 Farmington Hills |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS JX126912 7558 bp RNA linear VRL 20-AUG-2012 DEFINITION Norovirus Hu/GII.4/Ohio/7I/2012/USA, complete genome. ACCESSION JX126912 VERSION JX126912.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Ohio/7I/2012/USA ORGANISM Norovirus Hu/GII.4/Ohio/7I/2012/USA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7558) AUTHORS Ma,Y., Hughes,J.H. and Li,J. TITLE Direct Submission JOURNAL Submitted (01-JUN-2012) Department of Food Science and Technology, The Ohio State University, 2015 Fyffe Road, Columbus, OH 43210, USA FEATURES Location/Qualifiers source 1..7558 /organism="Norovirus Hu/GII.4/Ohio/7I/2012/USA" /mol_type="genomic RNA" /strain="Hu/GII.4/Ohio/7I/2012/USA" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1221623" /country="USA" /collection_date="2012" /note="genotype: GII.4" CDS 5..5104 /codon_start=1 /product="non-structural polyprotein" /protein_id="AFP89592.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARS KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEIVISYSVKDGVSGLPELSTVRQPE EANTAFSVPPLNQRENRDAREPLTGTILEMWDGEIYHYGLYVDRGLVLGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTVDDSKLKKVANIFLCALSSLFTRPIKDLIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAVENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSA KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLEDVRTM PELKQALKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTSNELTGALHHLR CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQNLWSKPQVENTEEVTNKDGC PKPKDDEEFIISSDDIKTEGKKGKNKAGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERVSLGLV TGSEIRKRNPDEFKPKGKLWADDDRSVDYNKKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TAVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYRYHYDADYSRWD STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSETTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6707 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AFP89593.1" /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNSYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGTHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGRIQGML TQTTRGDGSTRGHKATVSTGDVHFTPKLGSIQFNTDTNNDFETGQNTKFTPVGVIQDG NGTHQNEPQQWVLPSYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVL" CDS 6707..7513 /note="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="AFP89594.1" /translation="MAGAFFAGLASDVLGSGLGSLISAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMEVKRAMLLEGGFSETDASRGAIN APMTKALDWSGTRYWAPDARTTTYNTGRFSTPQPSGALPGRTNPRATVPARGFSNAPS NTSTATSVYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWIEDQNRDLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQLLFAHIRKRGESRA" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc 121 cctcggggcg cggtctaaac agcccccccc gagggaaata ccacaaagac ccccacgacc 181 acccactcca gaactggtca aaaagatccc tcctcccccg cccaacggag aggatgaaat 241 agtgatttct tatagtgtca aagatggcgt ttccggttta cctgagcttt ccaccgtcag 301 gcaaccggaa gaagctaata cggcctttag tgtccccccg ctcaatcaga gggagaatag 361 ggatgctagg gagccactga ctggaacaat tctggaaatg tgggatgggg aaatctacca 421 ttacggcctg tatgtggacc gaggtcttgt actaggcgtg cacaaaccac cagctgccat 481 cagcctcgcc aaggtcgaac taacaccact ctccttgttc tggagacctg tgtacactcc 541 tcagtacctc atctctccag acactctcaa gaaattacac ggagaaacgt tcccttacac 601 agcctttgac aacaattgct atgccttttg ctgctgggtc ctggacctaa acgactcgtg 661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa 721 taggaaaccc ctccccactg tggatgattc caagttaaag aaggtagcta atatattcct 781 gtgtgctctg tcttcgctgt tcaccaggcc cataaaagac ttaataggga agctaaggcc 841 tcttaacatc ctcaacatct tggcctcatg tgattggact ttcgcaggca tagtggagtc 901 cttgatactc ctggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactcggtg actacgagtt acaaggaccc gaggaccttg cagtggagct 1021 cgtccctgta gtgatggggg gaattggttt ggtgctggga ttcaccaaag agaagattgg 1081 aaaaatgttg tcatccgctg cgtccacctt gagagcttgc aaagatcttg gtgcatatgg 1141 gctagagatc ctaaagttgg tcatgaagtg gttcttcccg aagaaagagg aagcaaatga 1201 actggctatg gtgagatcca tcgaggatgc agtgctggac ctcgaggcag ttgagaacaa 1261 ccatatgacc accttgctca aagacaagga tagtttggca acctacatga gaacccttga 1321 ccttgaggag gagaaagcca gaaaactctc agccaagtct gcttcacctg acatcgtggg 1381 cacaatcaat gcccttctgg cgagaatcgc tgctgcacgt tccctggtgc atcgagcgaa 1441 ggaggagctt tccagcagac caagacctgt agtcttgatg atatcaggca gaccaggaat 1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc tcacaggaga 1561 ccagcgtgta ggcctcatcc cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga 1621 gagggtcgtc ctgtgggacg actatggaat gagcaatccc atccacgacg ccctcaggct 1681 gcaagaactc gctgacactt gccccctcac tctaaactgt gacaggatag agaataaagg 1741 aaaggtcttt gacagcgatg tcatcattat cactactaac ctggccaacc cagcaccact 1801 ggactatgtc aactttgaag catgctcgag gcgcatcgat ttcctcgtgt atgcagaagc 1861 ccctgaagtc gaaaaggcga agcgtgactt cccaggccaa cctgacatgt ggaagaatgc 1921 ctttagttct gatttctcac acataaaact agcactggct ccacagggtg gcttcgataa 1981 aaacgggaac accccgcacg ggaagggcgt catgaagact ctcaccactg gctcccttat 2041 tgcccgggca tcagggctac tccatgagag gctagatgag tttgaactac agggcccagc 2101 tctcaccacc ttcaactttg accgcaacaa agtgcttgcc tttaggcagc ttgctgctga 2161 aaacaaatat gggttgatgg acacaatgag agttgggagg cagctcgagg atgtcagaac 2221 catgccagag cttaaacaag cactcaagaa tatctcaatc aagaagtgcc agatagtgta 2281 cagtggttgc acctacacac ttgagtctga cggcaagggc aatgtgaaag ttgacagagt 2341 tcagagcacc tccgtgcaga ccagcaatga gctgactggc gccctgcacc acctaaggtg 2401 tgccagaatc aggtactatg tcaggtgtgt ccaggaggcc ctgtactcca ttatccagat 2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aaaacctatg 2521 gtccaagcca caagtggaaa acacagagga ggttaccaac aaggacgggt gcccaaaacc 2581 caaagatgat gaggagttca tcatttcatc cgacgacatt aaaactgagg gtaagaaagg 2641 gaagaacaaa gctggtcgcg gcaagaagca cacagccttc tcaagcaaag gtctcagtga 2701 tgaagagtat gatgagtaca agaggattag agaagagagg aatggcaagt attccataga 2761 agagtacctc caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgaccga 2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttta ggccaacaag 2881 aaaacaacgt aaggaggaaa gagtttctct cggtttagtc acaggttctg aaattaggaa 2941 aagaaaccca gatgaattca agcccaaggg gaaactgtgg gctgacgatg acagaagtgt 3001 ggattacaat aagaaactca gctttgaggc cccaccaagc atctggtcga ggatagtcaa 3061 ctttggttca ggttggggct tctgggtctc ccccagtctg ttcataacat caacccatgt 3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtacacaa 3181 atcaggcgaa ttctgtcgcc taagattccc aaaaccaatc aggactgatg tgacgggcat 3241 gatcttagaa gaaggtgcgc ccgagggcac cgcggtcaca ctactcataa aaaggtctac 3301 aggagaactc atgcccctag cagctagaat ggggacccat gcaaccatga aaattcaagg 3361 gcgtactgtt ggaggtcaga tgggcatgct tctgacagga tctaacgcca aaagcatgga 3421 cctaggcacc acaccaggtg attgcggctg tccctacatc tacaagagag ggaatgacta 3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aatactgtca tatgtgccac 3541 ccaggggagt gagggggagg ctacacttga aggtggtgac agtaagggaa catactgtgg 3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaaaacca aattctggag 3661 atcgtccaca gcaccactcc cacctggcac ctatgaacca gcctatcttg gtggcaagga 3721 tcccagggtc aagggtggcc cttcattgca gcaagtcatg agggaccagt tgaaaccatt 3781 tacagagccc aggggaaagc caccaaagcc aagtgtgtta gaagctgcca agaaaactat 3841 catcaatgtc cttgagcaaa caattgatcc acctgagaaa tggtcattcg cacaagcttg 3901 cgcgtccctc gacaagacca cttccagtgg ccacccgcat cacatgcgga aaaacgactg 3961 ctggaacggg gaatccttca caggcaagct ggcagatcag gcttccaagg ccaacctgat 4021 gttcgaagaa gggaaaaaca tgaccccagt ctacacaggt gcgcttaagg atgaattggt 4081 caaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatttagc 4141 aaccatgatc cgatgtgctc gagcgttcgg aggcctaatg gatgaactca aagcgcactg 4201 tgtcacactt cctatcagag ttggtatgaa tatgaatgag gatggcccca tcatattcga 4261 gaggcattcc aggtacagat atcactatga tgctgattac tctcggtggg attcaacaca 4321 acagagagct gtgttggcag cagctctaga aatcatggtt aaattctcct cagaaccaca 4381 tttggctcag gtagtcgcag aagaccttct ttctcctagc gtggtggatg tgggtgactt 4441 cacaatatca atcaacgagg gcctcccctc tggggtaccc tgcacctccc aatggaactc 4501 catcgcccat tggcttctca ctctctgcgc gctctctgaa actacaaatc tgtcccctga 4561 catcatacag gctaattccc tcttctcctt ttatggtgat gatgaaatcg ttagcacaga 4621 cataaaattg gacccagaga agttgacagc aaagctcagg gaatatgggc tgaaaccaac 4681 ccgccctgac aaaactgaag ggccccttgt tatctctgaa gacttaaatg gtctgacttt 4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagttc 4801 aatactcagg caaatgtact ggactagggg ccccaaccat gaagacccat ctgaaacaat 4861 gattccacac tcccaaagac ccatacagtt gatgtcctta ctgggagagg ccgcactcca 4921 cggcccagca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg 4981 catggatttt tacgtgccca ggcaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 atgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gttggtgccg ctattgcggc acctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag 5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttgggc cctgatctga 5341 atccctacct ttctcatttg gccaggatgt acaatagcta tgcaggtggc tttgaagtgc 5401 aggtaatcct tgcggggaac gcgttcaccg ccgggaaaat catatttgca gcagtcccac 5461 caaatttccc aactgaaggc ttgagcccca gccaggtcac tatgttcccc catataatag 5521 tagatgttag gcaactggaa cctgtgttga tccccttacc tgatgttagg aacaatttct 5581 atcactacaa ccaatcaaat gaccccacca ttaaattgat agcaatgctg tacacaccac 5641 ttagggctaa taatgctggg gaagatgtct tcacggtctc ttgtcgagtc ctcacgaggc 5701 catcccccga ttttgatttc atattcttgg tgccacccac agttgagtca agaactaaac 5761 cattcaccgt cccaatttta actgttgaag aaatgaccaa ttcaagattc cctattcctt 5821 tggaaaagtt gttcacgggc cctagcggtg cctttgttgt tcaaccacaa aatggcaggt 5881 gcacgactga tggcgtactc ttaggcacta cccaactgtc tcctgtcaac atttgcacct 5941 tcagagggga tgtcacccac attgcaggca ctcataatta cacaatgaat ttggcttctc 6001 aaaattggaa caattatgac ccaacagaag aaatcccagc ccctctgggg accccagact 6061 tcgtgggaag gatccaaggc atgctcaccc aaaccacaag gggagatggc tccacccgcg 6121 gccacaaagc tacagtgagc actggggatg tccacttcac tccaaagctg ggtagtattc 6181 aattcaacac tgatacaaac aatgattttg aaactggcca aaacacgaaa ttcaccccag 6241 tcggtgttat ccaggatggc aatggtaccc accaaaatga acctcaacaa tgggtgctcc 6301 caagttactc aggtagaact ggtcataatg tacacctagc ccccgccgta gcccccactt 6361 ttccgggtga gcagcttctt ttcttcaggt ccactatgcc cggatgcagc gggtacccca 6421 acatgaatct ggattgccta ctcccccaag aatgggtgca gcacttctat caagaggcag 6481 ctccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttc 6541 tatttgagtg caagctccat aaatcaggct acgtcacagt tgctcacact ggccagcatg 6601 atttggttat cccccccaat ggctacttta gatttgattc ctgggtcaac caattctaca 6661 cacttgcccc catgggaaat gggacggggc gcagacgtgt attataatgg ctggagcttt 6721 cttcgccggg ctggcatctg atgttcttgg ctctggactt ggttccttaa tcagtgctgg 6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaataac agaaaactgc aacaagcttc 6841 cttccaattt agtagcaatc tacaacaggc ttcctttcaa catgataaag agatgctcca 6901 agcacaaatt gaggccacta aaaagttgca acagggtatg atggaagtta aacgggcaat 6961 gctcctagag ggtggattct ctgaaacaga tgcatcccgt ggggcaatca acgcccccat 7021 gacaaaggct ttggactgga gcggaacaag gtactgggct cctgatgcta ggactacaac 7081 atacaataca ggccgctttt ccacccctca accctcgggg gcactgccag gaaggaccaa 7141 tcccagggct actgtccccg cccggggctt ctccaatgca ccttctaata cttctactgc 7201 tacttctgtg tattcaaatc aaactgtttc aacgagactt ggttctacag ctggttctgg 7261 caccagtgtc tcgagtctcc cgtcaactgc aaggactagg agctggattg aggatcaaaa 7321 cagggatttg tcacctttca tgaggggagc tcacaacata tcgtttgtca ccccaccatc 7381 tagtagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg 7441 gactggcgct tttaacacgc gcaggcagct tctcttcgct cacattcgta agcgagggga 7501 gtcacgggca taatgtgaaa agacaaaatt gattatcttt ctcttcttta gtgtcttt //