Typing tool
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Typing tool
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Complete norovirus genomes
| JX126912 | GII.4 Farmington Hills | |
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| GII.P4 Farmington Hills |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS JX126912 7558 bp RNA linear VRL 20-AUG-2012
DEFINITION Norovirus Hu/GII.4/Ohio/7I/2012/USA, complete genome.
ACCESSION JX126912
VERSION JX126912.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Ohio/7I/2012/USA
ORGANISM Norovirus Hu/GII.4/Ohio/7I/2012/USA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7558)
AUTHORS Ma,Y., Hughes,J.H. and Li,J.
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2012) Department of Food Science and Technology,
The Ohio State University, 2015 Fyffe Road, Columbus, OH 43210, USA
FEATURES Location/Qualifiers
source 1..7558
/organism="Norovirus Hu/GII.4/Ohio/7I/2012/USA"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Ohio/7I/2012/USA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1221623"
/geo_loc_name="USA"
/collection_date="2012"
/note="genotype: GII.4"
CDS 5..5104
/codon_start=1
/product="non-structural polyprotein"
/protein_id="AFP89592.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARS
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEIVISYSVKDGVSGLPELSTVRQPE
EANTAFSVPPLNQRENRDAREPLTGTILEMWDGEIYHYGLYVDRGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTVDDSKLKKVANIFLCALSSLFTRPIKDLIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAVENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSA
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLEDVRTM
PELKQALKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTSNELTGALHHLR
CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQNLWSKPQVENTEEVTNKDGC
PKPKDDEEFIISSDDIKTEGKKGKNKAGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERVSLGLV
TGSEIRKRNPDEFKPKGKLWADDDRSVDYNKKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TAVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYRYHYDADYSRWD
STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSETTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6707
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AFP89593.1"
/translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNSYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGRIQGML
TQTTRGDGSTRGHKATVSTGDVHFTPKLGSIQFNTDTNNDFETGQNTKFTPVGVIQDG
NGTHQNEPQQWVLPSYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRVL"
CDS 6707..7513
/note="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="AFP89594.1"
/translation="MAGAFFAGLASDVLGSGLGSLISAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMEVKRAMLLEGGFSETDASRGAIN
APMTKALDWSGTRYWAPDARTTTYNTGRFSTPQPSGALPGRTNPRATVPARGFSNAPS
NTSTATSVYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWIEDQNRDLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQLLFAHIRKRGESRA"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggtctaaac agcccccccc gagggaaata ccacaaagac ccccacgacc
181 acccactcca gaactggtca aaaagatccc tcctcccccg cccaacggag aggatgaaat
241 agtgatttct tatagtgtca aagatggcgt ttccggttta cctgagcttt ccaccgtcag
301 gcaaccggaa gaagctaata cggcctttag tgtccccccg ctcaatcaga gggagaatag
361 ggatgctagg gagccactga ctggaacaat tctggaaatg tgggatgggg aaatctacca
421 ttacggcctg tatgtggacc gaggtcttgt actaggcgtg cacaaaccac cagctgccat
481 cagcctcgcc aaggtcgaac taacaccact ctccttgttc tggagacctg tgtacactcc
541 tcagtacctc atctctccag acactctcaa gaaattacac ggagaaacgt tcccttacac
601 agcctttgac aacaattgct atgccttttg ctgctgggtc ctggacctaa acgactcgtg
661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa
721 taggaaaccc ctccccactg tggatgattc caagttaaag aaggtagcta atatattcct
781 gtgtgctctg tcttcgctgt tcaccaggcc cataaaagac ttaataggga agctaaggcc
841 tcttaacatc ctcaacatct tggcctcatg tgattggact ttcgcaggca tagtggagtc
901 cttgatactc ctggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gattgccccc ttactcggtg actacgagtt acaaggaccc gaggaccttg cagtggagct
1021 cgtccctgta gtgatggggg gaattggttt ggtgctggga ttcaccaaag agaagattgg
1081 aaaaatgttg tcatccgctg cgtccacctt gagagcttgc aaagatcttg gtgcatatgg
1141 gctagagatc ctaaagttgg tcatgaagtg gttcttcccg aagaaagagg aagcaaatga
1201 actggctatg gtgagatcca tcgaggatgc agtgctggac ctcgaggcag ttgagaacaa
1261 ccatatgacc accttgctca aagacaagga tagtttggca acctacatga gaacccttga
1321 ccttgaggag gagaaagcca gaaaactctc agccaagtct gcttcacctg acatcgtggg
1381 cacaatcaat gcccttctgg cgagaatcgc tgctgcacgt tccctggtgc atcgagcgaa
1441 ggaggagctt tccagcagac caagacctgt agtcttgatg atatcaggca gaccaggaat
1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc tcacaggaga
1561 ccagcgtgta ggcctcatcc cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga
1621 gagggtcgtc ctgtgggacg actatggaat gagcaatccc atccacgacg ccctcaggct
1681 gcaagaactc gctgacactt gccccctcac tctaaactgt gacaggatag agaataaagg
1741 aaaggtcttt gacagcgatg tcatcattat cactactaac ctggccaacc cagcaccact
1801 ggactatgtc aactttgaag catgctcgag gcgcatcgat ttcctcgtgt atgcagaagc
1861 ccctgaagtc gaaaaggcga agcgtgactt cccaggccaa cctgacatgt ggaagaatgc
1921 ctttagttct gatttctcac acataaaact agcactggct ccacagggtg gcttcgataa
1981 aaacgggaac accccgcacg ggaagggcgt catgaagact ctcaccactg gctcccttat
2041 tgcccgggca tcagggctac tccatgagag gctagatgag tttgaactac agggcccagc
2101 tctcaccacc ttcaactttg accgcaacaa agtgcttgcc tttaggcagc ttgctgctga
2161 aaacaaatat gggttgatgg acacaatgag agttgggagg cagctcgagg atgtcagaac
2221 catgccagag cttaaacaag cactcaagaa tatctcaatc aagaagtgcc agatagtgta
2281 cagtggttgc acctacacac ttgagtctga cggcaagggc aatgtgaaag ttgacagagt
2341 tcagagcacc tccgtgcaga ccagcaatga gctgactggc gccctgcacc acctaaggtg
2401 tgccagaatc aggtactatg tcaggtgtgt ccaggaggcc ctgtactcca ttatccagat
2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aaaacctatg
2521 gtccaagcca caagtggaaa acacagagga ggttaccaac aaggacgggt gcccaaaacc
2581 caaagatgat gaggagttca tcatttcatc cgacgacatt aaaactgagg gtaagaaagg
2641 gaagaacaaa gctggtcgcg gcaagaagca cacagccttc tcaagcaaag gtctcagtga
2701 tgaagagtat gatgagtaca agaggattag agaagagagg aatggcaagt attccataga
2761 agagtacctc caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgaccga
2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttta ggccaacaag
2881 aaaacaacgt aaggaggaaa gagtttctct cggtttagtc acaggttctg aaattaggaa
2941 aagaaaccca gatgaattca agcccaaggg gaaactgtgg gctgacgatg acagaagtgt
3001 ggattacaat aagaaactca gctttgaggc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggttca ggttggggct tctgggtctc ccccagtctg ttcataacat caacccatgt
3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtacacaa
3181 atcaggcgaa ttctgtcgcc taagattccc aaaaccaatc aggactgatg tgacgggcat
3241 gatcttagaa gaaggtgcgc ccgagggcac cgcggtcaca ctactcataa aaaggtctac
3301 aggagaactc atgcccctag cagctagaat ggggacccat gcaaccatga aaattcaagg
3361 gcgtactgtt ggaggtcaga tgggcatgct tctgacagga tctaacgcca aaagcatgga
3421 cctaggcacc acaccaggtg attgcggctg tccctacatc tacaagagag ggaatgacta
3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aatactgtca tatgtgccac
3541 ccaggggagt gagggggagg ctacacttga aggtggtgac agtaagggaa catactgtgg
3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaaaacca aattctggag
3661 atcgtccaca gcaccactcc cacctggcac ctatgaacca gcctatcttg gtggcaagga
3721 tcccagggtc aagggtggcc cttcattgca gcaagtcatg agggaccagt tgaaaccatt
3781 tacagagccc aggggaaagc caccaaagcc aagtgtgtta gaagctgcca agaaaactat
3841 catcaatgtc cttgagcaaa caattgatcc acctgagaaa tggtcattcg cacaagcttg
3901 cgcgtccctc gacaagacca cttccagtgg ccacccgcat cacatgcgga aaaacgactg
3961 ctggaacggg gaatccttca caggcaagct ggcagatcag gcttccaagg ccaacctgat
4021 gttcgaagaa gggaaaaaca tgaccccagt ctacacaggt gcgcttaagg atgaattggt
4081 caaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatttagc
4141 aaccatgatc cgatgtgctc gagcgttcgg aggcctaatg gatgaactca aagcgcactg
4201 tgtcacactt cctatcagag ttggtatgaa tatgaatgag gatggcccca tcatattcga
4261 gaggcattcc aggtacagat atcactatga tgctgattac tctcggtggg attcaacaca
4321 acagagagct gtgttggcag cagctctaga aatcatggtt aaattctcct cagaaccaca
4381 tttggctcag gtagtcgcag aagaccttct ttctcctagc gtggtggatg tgggtgactt
4441 cacaatatca atcaacgagg gcctcccctc tggggtaccc tgcacctccc aatggaactc
4501 catcgcccat tggcttctca ctctctgcgc gctctctgaa actacaaatc tgtcccctga
4561 catcatacag gctaattccc tcttctcctt ttatggtgat gatgaaatcg ttagcacaga
4621 cataaaattg gacccagaga agttgacagc aaagctcagg gaatatgggc tgaaaccaac
4681 ccgccctgac aaaactgaag ggccccttgt tatctctgaa gacttaaatg gtctgacttt
4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagttc
4801 aatactcagg caaatgtact ggactagggg ccccaaccat gaagacccat ctgaaacaat
4861 gattccacac tcccaaagac ccatacagtt gatgtcctta ctgggagagg ccgcactcca
4921 cggcccagca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg
4981 catggatttt tacgtgccca ggcaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gttggtgccg ctattgcggc acctgtagcg ggccaacaaa
5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag
5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttgggc cctgatctga
5341 atccctacct ttctcatttg gccaggatgt acaatagcta tgcaggtggc tttgaagtgc
5401 aggtaatcct tgcggggaac gcgttcaccg ccgggaaaat catatttgca gcagtcccac
5461 caaatttccc aactgaaggc ttgagcccca gccaggtcac tatgttcccc catataatag
5521 tagatgttag gcaactggaa cctgtgttga tccccttacc tgatgttagg aacaatttct
5581 atcactacaa ccaatcaaat gaccccacca ttaaattgat agcaatgctg tacacaccac
5641 ttagggctaa taatgctggg gaagatgtct tcacggtctc ttgtcgagtc ctcacgaggc
5701 catcccccga ttttgatttc atattcttgg tgccacccac agttgagtca agaactaaac
5761 cattcaccgt cccaatttta actgttgaag aaatgaccaa ttcaagattc cctattcctt
5821 tggaaaagtt gttcacgggc cctagcggtg cctttgttgt tcaaccacaa aatggcaggt
5881 gcacgactga tggcgtactc ttaggcacta cccaactgtc tcctgtcaac atttgcacct
5941 tcagagggga tgtcacccac attgcaggca ctcataatta cacaatgaat ttggcttctc
6001 aaaattggaa caattatgac ccaacagaag aaatcccagc ccctctgggg accccagact
6061 tcgtgggaag gatccaaggc atgctcaccc aaaccacaag gggagatggc tccacccgcg
6121 gccacaaagc tacagtgagc actggggatg tccacttcac tccaaagctg ggtagtattc
6181 aattcaacac tgatacaaac aatgattttg aaactggcca aaacacgaaa ttcaccccag
6241 tcggtgttat ccaggatggc aatggtaccc accaaaatga acctcaacaa tgggtgctcc
6301 caagttactc aggtagaact ggtcataatg tacacctagc ccccgccgta gcccccactt
6361 ttccgggtga gcagcttctt ttcttcaggt ccactatgcc cggatgcagc gggtacccca
6421 acatgaatct ggattgccta ctcccccaag aatgggtgca gcacttctat caagaggcag
6481 ctccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttc
6541 tatttgagtg caagctccat aaatcaggct acgtcacagt tgctcacact ggccagcatg
6601 atttggttat cccccccaat ggctacttta gatttgattc ctgggtcaac caattctaca
6661 cacttgcccc catgggaaat gggacggggc gcagacgtgt attataatgg ctggagcttt
6721 cttcgccggg ctggcatctg atgttcttgg ctctggactt ggttccttaa tcagtgctgg
6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaataac agaaaactgc aacaagcttc
6841 cttccaattt agtagcaatc tacaacaggc ttcctttcaa catgataaag agatgctcca
6901 agcacaaatt gaggccacta aaaagttgca acagggtatg atggaagtta aacgggcaat
6961 gctcctagag ggtggattct ctgaaacaga tgcatcccgt ggggcaatca acgcccccat
7021 gacaaaggct ttggactgga gcggaacaag gtactgggct cctgatgcta ggactacaac
7081 atacaataca ggccgctttt ccacccctca accctcgggg gcactgccag gaaggaccaa
7141 tcccagggct actgtccccg cccggggctt ctccaatgca ccttctaata cttctactgc
7201 tacttctgtg tattcaaatc aaactgtttc aacgagactt ggttctacag ctggttctgg
7261 caccagtgtc tcgagtctcc cgtcaactgc aaggactagg agctggattg aggatcaaaa
7321 cagggatttg tcacctttca tgaggggagc tcacaacata tcgtttgtca ccccaccatc
7381 tagtagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg
7441 gactggcgct tttaacacgc gcaggcagct tctcttcgct cacattcgta agcgagggga
7501 gtcacgggca taatgtgaaa agacaaaatt gattatcttt ctcttcttta gtgtcttt
//