Typing tool
|
Complete norovirus genomes
JQ622197 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS JQ622197 7583 bp RNA linear VRL 07-NOV-2012 DEFINITION Norovirus Hu/GII-4/CBNU2/2007/KR, complete genome. ACCESSION JQ622197 VERSION JQ622197.1 KEYWORDS . SOURCE Norovirus Hu/GII-4/CBNU2/2007/KR ORGANISM Norovirus Hu/GII-4/CBNU2/2007/KR Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7583) AUTHORS Lee,G.C., Jung,G.S. and Lee,C.H. TITLE Complete genomic sequence analysis of norovirus isolated from South Korea JOURNAL Virus Genes 45 (2), 225-236 (2012) PUBMED 22752565 REFERENCE 2 (bases 1 to 7583) AUTHORS Jung,G.S., Lee,G.C. and Lee,C.H. TITLE Direct Submission JOURNAL Submitted (05-FEB-2012) Department of Microbiology, Chungbuk National University, Gaesin-dong, Heungdeok-gu, Cheongju-si, Chungbuk 361-763, South Korea COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7583 /organism="Norovirus Hu/GII-4/CBNU2/2007/KR" /mol_type="genomic RNA" /isolate="Hu/GII-4/CBNU2/KR/2007" /host="Homo sapiens" /db_xref="taxon:1184496" /country="South Korea" /collection_date="20-Feb-2007" /note="genotype: GII-4" 5'UTR 1..4 CDS 5..5104 /note="encodes NTPase, 3A, VPg, 3Cpro and 3Dpol" /codon_start=1 /product="non-structural polyprotein" /protein_id="AFJ24944.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDKMFSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEVVVSYSAKDGVSGLPELSTVRQPE ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTVDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LRPLNIINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPED LVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLVDTMKVGRQLKDVKTM PELKQALKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEATNKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6707 /note="VP1" /codon_start=1 /product="capsid protein" /protein_id="AFJ24945.1" /translation="MKMASNDANPSDGSAASLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGGNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6707..7513 /codon_start=1 /product="VP2" /protein_id="AFJ24946.1" /translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTPTPARGSPSTFS NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIHRRGESRV" 3'UTR 7514..7583 ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acaaaatgtt ttctagcatg gctgtcactt ttaaacgagc 121 cctcggggcg cggcctaaac agcccccccc gagggaaata ccacaaagac ccccacgacc 181 acctactcca gaactggtca aaaagatccc tcctcccccg cccaacggag aggatgaagt 241 agtggtttct tatagtgcca aagatggcgt ttccggttta cctgagcttt ccaccgtcag 301 gcaaccggaa gaaaccaata cggccttcag tgtccctcca ctcaatcaga gggagaatag 361 ggatgctaag gaaccactga ctggaacaat tctggaaatg tgggatggag aaatctacca 421 ttatggcctg tatgttgagc gaggtcttgt gctgggtgtg cacaaaccac cagctgccat 481 tagcctcgcc aaggtcgaac taacaccact ctccttgttc tggagacctg tgtacactcc 541 tcagtacctc atctctccag acactctcaa gaaattacac ggagaaacat ttccctacac 601 agccttcgac aacaattgct atgccttttg ttgctgggtc ctggatctaa acgactcgtg 661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa 721 taggaaaccc ctccccactg tggatgattc caaattaaag aaggtagcta acatattcct 781 gtgcaccctg tcttcgctat tcaccaggcc cataaaagac ataataggga agttaaggcc 841 tctcaacatc atcaacatcc tggcttcatg tgattggact ttcgcaggca tagtggagtc 901 cttgatactc ttggcagagc tctttggagt cttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactcggtg atttcgagtt acaaggacct gaggaccttg tagtggagct 1021 cgtccctgta gtaatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg 1081 aaaaatgttg tcatctgctg catctacctt gagagcttgt aaagatcttg gtgcatatgg 1141 gctagagatc ctaaagttag tcatgaagtg gttcttcccg aagaaagagg aagcaaatga 1201 actggctatg gtgagatcca tcgaggatgc agtactggac cttgaggcaa ttgaaaacaa 1261 ccatatgacc accttgctca aagacaaaga cagcctggca acctatatga gaacccttga 1321 cctcgaggaa gagaaagcca gaaaactctc aaccaagtct gcttcacctg acatcgtggg 1381 cacaatcaac gcccttctgg cgagaatcgc cgctgcacgc tccctggtgc accgagcgaa 1441 ggaggagctt tccagcagac caagacctgt agtcttgatg atatcaggca gaccaggaat 1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc tcacaggaga 1561 ccagcgtgta ggcctcatcc cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga 1621 gagggtcgtc ctatgggacg actatggaat gagcaatccc atccacgacg ccctcaggct 1681 gcaagaactc gctgacactt gccccctcac tctaaattgt gacaggattg agaataaagg 1741 aaaggtcttt gacagcgatg tcatcattat cactactaac ctggccaacc cagcaccact 1801 ggactatgtc aactttgaag cgtgctcgag gcgcatcgat ttcctcgtgt atgcagaagc 1861 ccccgaggtc gaaaaggcga agcgtgactt cccgggccaa cctgacatgt ggaaaaacgc 1921 ttttagtcct gatttctcac acataaaatt ggcactggct ccacaaggtg gctttgataa 1981 gaacgggaac accccacacg ggaagggcgt catgaagact ctcaccactg gctccctcat 2041 tgcccgggca tcagggctgc tccatgagag attggatgag tttgaactac agggcccagc 2101 tctcaccacc ttcaactttg accgcaacaa agtgcttgcc ttcaggcagc ttgctgctga 2161 aaacaaatac gggttggtgg acacaatgaa agttgggagg cagctcaagg atgtcaaaac 2221 catgccagaa cttaaacaag cactcaagaa tatctcaatc aagaagtgcc agattgtgta 2281 tagtggttgc acctacacac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt 2341 tcagagcacc tccgttcaga ccaacaatga gctggctggc gccctgcacc atctaaggtg 2401 cgccagaatc aggtactatg tcaagtgtgt tcaggaggcc ctgtattcta tcatccagat 2461 tgctggggct gcatttgtca ccacgcgcat catcaagcgt gtgaacattc aagacttatg 2521 gtccaagcca caagtggaaa acacagagga ggctaccaac aaggacgggt gcccaaaacc 2581 caaagatgat gaggagttcg tcatttcatc tgacgatatt aaaactgagg gtaagaaagg 2641 gaagaacaag actggccgtg gcaagaagca cacagccttc tcaagtaaag gtctcagtga 2701 tgaagagtat gatgagtaca agagaattag agaggaaagg aatggcaagt actccataga 2761 agagtacctc caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgaccga 2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca gaccaacaag 2881 gaaacaacgc aaggaagaaa gagcttctct cggtttagtc acaggttctg aaattaggaa 2941 aaggaaccca gaagacttca agcctaaggg gaaactatgg gctgacgatg acagaagtgt 3001 ggactacaat gaaaaactca gctttgaggc cccaccaagc atctggtcaa ggatagtcaa 3061 ctttggctca ggttggggct tctgggtctc ccccagcctg ttcataacat caacccacgt 3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtacacaa 3181 gtcaggcgaa ttctgtcgct tgaggttccc aaaaccaatc aggactgatg tgactggcat 3241 gatcttggaa gaaggtgcac ccgaaggcac cgtggtcaca ctactcatca aaaggtctac 3301 tggagaactc atgcccctag cagctagaat ggggacccat gcaaccatga aaattcaagg 3361 gcgcactgtt ggaggtcaga tgggcatgct tctgacagga tccaacgcca aaagcatgga 3421 cctaggcacc acaccaggtg attgcggctg tccctacatc tacaagagag gaaatgacta 3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgcgccac 3541 ccaggggggt gagggggaag ctacacttga aggtggtgac agtaagggaa catactgtgg 3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaaaacca aattctggag 3661 atcatccaca gcaccactcc cacctggcac ctatgaacca gcctaccttg gtggcaagga 3721 ccccagagtc aagggtggcc cctcgttgca gcaagtcatg agggaccagc tgaaaccatt 3781 tacagagcct aggggtaagc caccaaagcc aagcgtgtta gaagctgcca agaaaaccat 3841 catcaatgtc cttgaacaaa caattgaccc acctgagaag tggtcgttcg cacaagcttg 3901 cgcgtccctt gacaagacca cttctagcgg ccacccgcac cacatgcgga aaaacgactg 3961 ctggaacggg gaatccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat 4021 gtttgaagaa gggaagaaca tgaccccagt ctacacaggt gcacttaagg atgaattagt 4081 caaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatttagc 4141 aaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcacactg 4201 tgtcacactt cctatcagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga 4261 gaagcattcc aggtacagat accactatga tgctgattac tctcggtggg attcaacaca 4321 acagagagcc gtgctggcag ctgctctaga aatcatggtt aaattctcct cagaaccaca 4381 tttggctcag gtagtagcag aagacctcct ttctcctagc gtggtggatg tgggtgactt 4441 cacaatatca atcaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc 4501 catcgcccac tggcttctca ctctctgtgc actctccgaa gttacaaatt tgtccccaga 4561 catcatacag gctaattctc tcttctcctt ctatggtgat gatgaaattg ttagtacaga 4621 cataaaatta gacccagaga agttgacagc aaagcttaag gaatacgggt tgaaaccaac 4681 ccgccctgat aaaactgaag gacctcttgt tatttctgaa gacttagatg gtttgacttt 4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagctc 4801 aatactcagg caaatgtact ggactagggg ccccaaccat gaagatccat ctgaatcaat 4861 gattccacac tctcaaagac ccatacaatt gatgtcctta ctgggagagg ccgcactcca 4921 cggcccaaca ttctacagta aaattagcaa attagtcatt gcagagctaa aagaaggtgg 4981 tatggatttt tacgtgccca ggcaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 atgacgccaa cccatctgat gggtccgcag ccagcctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gtcggtgccg ctattgcggc gcctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagttcacag 5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttaggc cctgatctga 5341 atccctacct atctcatttg gccagaatgt ataatggtta tgcaggtggt tttgaagtac 5401 aggtgatcct cgcggggaac gcgtttaccg ccggaaaaat tatatttgca gcagtcccac 5461 caaattttcc aactgaaggc ttgagtccca gccaggtcac tatgttcccc cacataatag 5521 tggatgttag gcaattggaa cctgtgttga tccccttacc tgatgttagg aataacttct 5581 atcactataa tcagtcaaat gattctacca ttaaattgat agcaatgctg tatacaccac 5641 ttagggctaa taatgctggg gaagatgtct tcacagtctc ttgtcgagtt ctcacgaggc 5701 catcccctga ttttgatttt atatttttgg tgccacctac agttgagtca agaactaaac 5761 catttactgt cccaatctta actgttgaag aaatgaccaa ttcaagattc cccattcctt 5821 tggaaaaatt gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aatggcagat 5881 gcacgactga tggcgtgctc ttaggcacca cccaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccac attgcaggtt ctcgcaatta tacaatgaat ttggcttctc 6001 taaattggaa caattatgac ccaacagaag aaattccagc ccctctagga actccagatt 6061 tcgtgggaaa gatccaaggt gtgctcactc aaaccacaaa gggagatggc tcgacccgtg 6121 gccataaagc tacagtttac actgggagtg ccccctttac tccaaagctg ggcagtgttc 6181 aattcagtac tgatacagaa aatgattttg aaactcacca aaacacaaaa ttcaccccag 6241 tcggtgtcat ccaggatggt agcaccaccc accgaaatga accccaacaa tgggtgctcc 6301 caagttattc aggtggaaat gtccataatg tacacctagc ccctgctgta gcccccactt 6361 ttccgggtga acaacttctt ttctttaggt ccactatgcc cgggtgcagc gggtatccaa 6421 acatggattt ggattgccta ctcccccagg agtgggtgca gcatttctac caagaggcag 6481 ctccagcaca atctgatgtg gctctattga gatttgtgaa tccagacacg ggtagggtcc 6541 tgtttgagtg caaacttcat aaatcaggct atgtcacagt ggctcacacc ggccagcatg 6601 atttggtcat cccccccaat ggttatttta ggtttgattc ctgggttaat caattctaca 6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc tttataatgg ctggagcttt 6721 ctttgctgga ttggcatctg atgtccttag ctctggactt ggttccctaa tcaatgctgg 6781 ggctggggct atcaaccaaa agattgattt tgaaaataac agaaaattgc agcaagcttc 6841 cttccagttt agcagcaatc tacaacaggc ttcctttcaa catgataaag agatgctcca 6901 agcacaaatt gaggccacta aaaagttgca acaggaaatg atgaaagtca aacaggcaat 6961 gctcttagaa ggtggattct ctgaaacaga tgcagcccgt ggggcaatca acgcccctat 7021 gacaaaggct ttggactgga gcggaacaag gtactgggcc cctgatgcta ggactacaac 7081 atacaatgca ggccgttttt ccacccctca accttcgggg gcactgccag gaagaatcaa 7141 tcccaggact cctacccccg ctcggggctc ccccagcaca ttttctaatg cttctactgc 7201 tacttctata tattcaaatc aaactgtttc aacgagactt ggttctacag ctggttctgg 7261 caccaatgtc tcgagtctcc cgtcaactgc aaggactagg agttgggttg aggaccaaaa 7321 cagaaatttg tcacctttca tgaggggggc tcacaacata tcgtttgtca ccccaccatc 7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg 7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcata ggcgagggga 7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttt ccctttcttt agtgtctttt 7561 aaaaaaaaaa aaaaaaaaaa aaa //