Typing tool
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Typing tool
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Complete norovirus genomes
| JQ388274 | GI.6 | |
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| GI.P11 |
ORF1: 5..5371
ORF2: 5355..6977
ORF3: 6977..7606
LOCUS JQ388274 7691 bp RNA linear VRL 22-APR-2012
DEFINITION Norovirus Hu/GI.6/Kingston/ACT160D/2010/AU, complete genome.
ACCESSION JQ388274
VERSION JQ388274.1
KEYWORDS .
SOURCE Norovirus Hu/GI.6/Kingston/ACT160D/2010/AU
ORGANISM Norovirus Hu/GI.6/Kingston/ACT160D/2010/AU
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7691)
AUTHORS Eden,J.-S. and White,P.A.
TITLE Norovirus Full-Length Genomes
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7691)
AUTHORS Eden,J.-S. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2012) School of Biotechnology and Biomolecular
Sciences, University of New South Wales, Anzac Parade, Sydney, NSW
2052, Australia
FEATURES Location/Qualifiers
source 1..7691
/organism="Norovirus Hu/GI.6/Kingston/ACT160D/2010/AU"
/mol_type="genomic RNA"
/strain="Hu/GI.6/Kingston/ACT160D/2010/AU"
/host="Homo sapiens"
/db_xref="taxon:1173217"
/country="Australia"
/collection_date="2010"
/note="genotype: GI.6"
5'UTR 1..4
CDS 5..5371
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="AFH88382.1"
/translation="MMMASKDVVATNVASNNNANNTSATSRFLSRFRGLGGGASPPNP
IKIKSTEMALGLIGKTTQEAAGTNGLPPKQQRDRPPRTQEEVQYGMGWTERPMDQNVK
SWEELDTSTKEEILDSHKEWFDAGGLGPCTMPSTCEQARDDSPPGEQVRWSVRDGIDL
GVNRLTTVSGPEWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTV
GVHSPQAAFSVARVTIQPIAAWWRVCYIPQPKHRLSYDQLKELENEPWPYAAITNNCF
EFCCQVMNLEDTWLQRRLITSGRFHHPSQSWSQQTPEFQQDSKLELVRDAILAAVNGL
VSQPFKNFLNKLKPLNILSILSNCDWTFMGVVEMVVLLLELFGVFWNPPDVSNFIASL
LPDFHLQGPEDLARDLVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLE
IFSLLKKYFFGGDQTERTLKGIETAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEE
EKARKLSAKNADPHVISSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIG
KTKAAEHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNK
LQAIADSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVY
CSAPEVEQIRRVSPGDTSALKDCFKPDFSHLRMELAPQGGFDNQGNTPFGKGIMKPTT
INRLLIQAVALTMERQDEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMASLGKKLR
GVTSMEGLKNALKGYKIGACTIKWQAKVYSLESDGNSVNIREEKNVLTQQQQSVCTAS
IALTRLRAARAVAYASCIQSAITSILQIAASALVVNRAVKRMFGTRTAALSLEGPPKE
HKCRVHQAKAAGKGPIGHDDVVDKYGLCETEEDEEAVQTEMPSATIEGKNKGKNKKGR
GRKNNYNAFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDG
GIGETEMEIRHRVFYKSKSKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDER
EVDYNERINFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLTSI
AIHRAGEFTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIA
SMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKS
GNTVVCAVQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVY
EPAYLGGRDPRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMD
TPVPWSYSDACQSLDKTTSSGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQGKSM
KPMYTAALKDELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPI
KVGMNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELAS
VVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDV
IQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKSVDGLV
FLRRTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKIQLISLLGEA
SLHGEKFYRKISSKVIQEVKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVN
DDGV"
CDS 5355..6977
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AFH88383.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLYHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQNQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQPSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
CDS 6977..7606
/note="minor capsid protein"
/codon_start=1
/product="VP2"
/protein_id="AFH88384.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPASSATTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR"
3'UTR 7607..7691
ORIGIN
1 gtgaatgatg atggcgtcga aagacgtcgt tgcgactaat gttgcaagca ataacaatgc
61 taacaacact agtgctacat ctcgattttt atcgaggttt aggggtttag gtggtggcgc
121 gagcccccct aaccccataa agattaaaag cacagaaatg gcattgggtt tgattggcaa
181 gacaacccaa gaggcagcag ggaccaatgg cctgccacct aaacagcaaa gagaccgacc
241 ccccaggact caagaggaag ttcaatacgg catgggatgg actgaacggc ctatggatca
301 gaatgttaag tcatgggagg aacttgacac ctctaccaag gaagagatct tggacagcca
361 caaagaatgg ttcgatgcag gcggtttggg cccatgcaca atgccctcaa cttgtgaaca
421 ggctagagat gatagcccgc ctggtgagca agtcagatgg tcagtgcgtg atggaattga
481 ccttggagtg aatcgcctca caacggtgag tggccccgag tggaatctct gtcctttacc
541 ccccattgac ctaaggaata tggaaccagc tagtgaaccc accattggag acatgataga
601 gttttatgaa ggtcacatct accactactc catatacata gggcagggaa agacagttgg
661 tgtgcactcc ccacaggcgg cattctcagt ggccagagta accatccaac ccatagctgc
721 ttggtggagg gtctgctaca taccccagcc caaacacagg ctgagttacg accagcttaa
781 ggagttggaa aatgaacctt ggccatatgc agctatcacc aacaattgtt ttgagttttg
841 ctgtcaagtt atgaatcttg aggacacatg gttacagagg cgactaataa catcaggtag
901 attccaccac ccttcccagt cttggtcaca acagacccct gaatttcagc aggacagcaa
961 gctggagctg gttagagatg ccatactggc cgcggtgaat ggccttgttt cacaaccctt
1021 taaaaatttc ttgaataagc tcaagcccct taacatccta agcatcttat ctaactgtga
1081 ttggactttt atgggggtgg ttgagatggt tgtactactt cttgagctct ttggcgtgtt
1141 ctggaatccg cccgatgtgt ctaattttat agcatctctc ctccctgatt ttcacctcca
1201 ggggccagaa gacctagccc gggatctggt gccagtcatt cttggtggca tagggctagc
1261 cattggattt accagagaca aggtcactaa agtcatgaaa agtgctgtag atgggctccg
1321 ggccgctacg cagctagggc aatatggatt ggaaatattt tcactcctca agaagtattt
1381 ctttggtggg gaccagactg aacgaactct caaaggcatt gaaacagcag tcatagatat
1441 ggaggttttg tcctctacat cagtaacaca actggtgaga gacaagcagg cagctaaagc
1501 ttatatgaac atcctggata atgaagagga aaaagctaga aaactctctg ctaagaatgc
1561 tgacccccat gtgatatcct caacaaatgc cctgatatca cgcatagcca tggcacgatc
1621 cgctctggct aaggctcaag ctgagatgac cagtcgaatg aggccagtcg ttatcatgat
1681 gtgtggacct cctggaattg ggaagactaa ggcagcggag cacttggcaa aacgcctggc
1741 taatgagatc aggcctggcg gcaaagtggg actagtgcca cgtgaggctg ttgaccactg
1801 ggatggttac catggtgagg aggtgatgct atgggatgac tatggcatga caaagataca
1861 agatgactgt aacaagctcc aggccattgc tgactctgcc ccactcactc tcaattgtga
1921 taggattgaa aacaagggga tgcagtttgt gtcagatgcg atagtcatca ctaccaatgc
1981 cccaggacct gcccctgtcg acttcgtcaa tctcggtcct gtgtgcagac gggttgactt
2041 cctggtctac tgttctgccc cagaggtgga gcaaataagg agagtcagcc ctggtgacac
2101 atcagcgctt aaagactgct tcaaaccaga tttctcccat cttaggatgg agttggctcc
2161 tcaaggggga tttgacaacc aagggaacac gccatttggc aagggtatta tgaaaccaac
2221 aactatcaat aggctcctca tacaagctgt ggctcttacc atggagagac aggatgagtt
2281 ccggctccag gggaagatgt atgattttga tgatgatagg gtgtcagcct tcaccaccat
2341 ggcacgcgat aatgggttgg gcattctgag tatggcgagc ctaggtaaga agctgcgcgg
2401 tgttacatca atggagggtc tgaagaatgc tttgaagggg tacaaaattg gtgcgtgcac
2461 aatcaagtgg caggccaagg tgtattcact ggaatcagat ggcaacagtg ttaacattag
2521 agaggagaag aatgttttga ctcaacaaca gcagtcggtg tgcactgcct ccattgcact
2581 cacccgcctg cgggccgcgc gtgcagtggc gtatgcgtca tgcatccaat cagccataac
2641 ctccatacta caaatagctg cctcagccct agtggtcaac agagccgtga aaagaatgtt
2701 tggcacacgc acagctgctt tatccctaga gggccccccc aaagaacaca agtgcagggt
2761 ccaccaggct aaggccgcag ggaaggggcc cattggccat gatgacgtgg ttgataagta
2821 tggactatgt gagactgagg aggacgaaga ggcagtccaa accgagatgc catctgccac
2881 catagaaggc aagaataaag ggaagaacaa gaaagggcgc ggccgaaaga ataactacaa
2941 tgccttttcc cgtagagggc tcaatgatga agagtacgag gagtacaaga aaatacggga
3001 agagaagggt ggaaattaca gcattcagga gtacctagaa gatagacaaa ggtatgaaga
3061 ggagcttgct gaggttcaag caggtggaga tggagggatc ggcgaaaccg aaatggaaat
3121 ccgccataga gtgttctata agtccaagag caagaagcac caccaggaag aacggcgcca
3181 actaggatta gtcacaggtt ctgacatccg gaaaaggaaa ccaattgact ggaccccccc
3241 taagtcagca tgggcagatg atgagcgtga agtggactac aatgagagaa tcaactttga
3301 ggcgcccccc actttgtgga gccgggtcac aaaatttgga tctgggtggg gcttttgggt
3361 tagtcccaca gtcttcataa ccacaacgca cgtcatacca accagtgcaa aagagttctt
3421 tggtgaaccc cttaccagta tagccattca tagggctgga gaattcaccc tcttcaggtt
3481 ctctaagaaa atcaggcccg atctcacggg catgattctt gaggaaggct gcccagaagg
3541 cacggtgtgc tcagtgttaa taaaaaggga ctccggtgag ctattaccat tagctgtaag
3601 aatgggcgcg atagcatcaa tgcgcataca gggtcgcctt gtccatggcc agtctggtat
3661 gttgctcacc ggggcgaatg ctaagggcat ggaccttgga actatcccag gggattgtgg
3721 agctccctat gtctataaga gagcaaatga ctgggtggtt tgtggtgtgc atgctgctgc
3781 cactaaatca ggcaacacgg tagtgtgtgc cgtccaagct agtgaaggag agaccacact
3841 ggaagggggt gacaaaggtc actatgccgg gcatgagata atcaagcatg gatgtgggcc
3901 agccctatca accaaaacaa agttctggaa gtcgtcccct gaaccactac cccctggagt
3961 ctatgaacct gcatacctcg gtggccggga cccaagagtg agtggtggtc cctcgctcca
4021 acaggtgttg cgggatcagt taaagccatt tgctgaacca cgggggcgta tgccagagcc
4081 aggtctcctg gaggccgcag ttgagactgt gacctcatca ctggagcagg ttatggatac
4141 cccagtgcca tggagttaca gcgatgcatg tcaatcccta gataaaacta ctagctcagg
4201 tttccctcac cacaagaaga agaatgatga ttggaacggc accgccttta tcagggaatt
4261 gggagagcaa gcggcgcacg ccaataacat gtatgaacaa ggtaagagta tgaagcccat
4321 gtacacggcg gcgcttaagg atgaattggt gaagccagaa aaagtgtacc aaaaagtgaa
4381 aaagcgcttg ctttgggggg cagatctagg aacagtgatc cgggctgcac gagccttcgg
4441 cccgttctgt gacgccataa agtcccacac aatcaaatta cctatcaaag ttgggatgaa
4501 ttcaattgag gatgggccac taatttatgc agagcattca aaatataaat atcattttga
4561 tgcagactat acagcttggg attcaacaca aaataggcaa attatgactg aatcattctc
4621 aatcatgtgc cgattgactg cttctccaga attggcctca gtggtagcac aagatctact
4681 cgcaccctca gaaatggacg ttggtgacta cgtcataaga gtaaaggaag gccttccatc
4741 cggctttcca tgcacatcac aggtcaatag cataaaccat tggttgataa ctttgtgtgc
4801 cctctctgag gtgactggcc tgtcaccaga tgttattcag tctatgtcat acttctcttt
4861 ctatggtgat gatgaaattg tttccactga catagaattt gacccagcta agttgacaca
4921 agtccttaag gagtatggcc ttaagcccac ccgtcccgac aagagtgaag gtccaataat
4981 tgtgaggaag agtgtggatg gcctagtctt cttacgccgc accatttccc gcgacgccgc
5041 ggggttccaa gggcgactag accgggcgtc cattgaaagg caaatctatt ggaccagagg
5101 gcccaatcac tcagacccct ttgaaacctt ggtgccccac cagcaaagaa aaattcagct
5161 gatatcactg ttaggtgagg cttcattgca tggtgaaaag ttctacagga agatttcaag
5221 caaagtcatc caagaggtta aaacaggggg tcttgaaatg tatgtgccag ggtggcaagc
5281 catgttccgc tggatgcggt tccatgatct tggcttgtgg acaggagatc gcaatctcct
5341 gcccgaattc gtaaatgatg atggcgtcta aggacgcccc aacatcccct gatggcgcca
5401 gtggcgccgg ccagctggta ccggaggcta atacagctga gcaaatttca atggaccctg
5461 ttgcgggtgc ttcaacagca gtcgcgacgg ctggacaagt aaatatgatt gacccttgga
5521 tttttaataa ttttgtccag gcacctcaag gagaattcac tatttcccct aataataccc
5581 ccggtgatat tttgtttgat ttacaattgg gaccccacct taacccattt ctagcccatc
5641 tctcacagat gtataatggt tgggtcggca atatgcgtgt gcgcatactg ttggccggga
5701 atgcctttac agctggaaag ataatcattt gctgtgtccc ccctggtttt gatgctagaa
5761 tactcactat agctcaagca accctcttcc cacacttaat tgctgatgta aggacccttg
5821 agcctgtgga gcttcctttg gaggatgtgc gcaacgttct ctaccacaat agtagccagc
5881 cgcagccaac aatgcggctg gttgctatgt tgtacactcc cctccgcact ggtggtggtt
5941 ccggaggcac tgatgccttt gtggtggcgg gtagggtgct tacgtgcccc gcccccgatt
6001 ttagttttct gtttcttgtt cccccttccg ttgaacagaa gactagagtt ttcagtgtcc
6061 ccaatatacc ccttaaagat ctctcaaatt ctcgtgtccc tgtgcccgta cagggcatgt
6121 ttatgtcccc agatgttaat cagtcagtcc agtttcagaa tgggcgttgc caaattgatg
6181 gtcaactcca gggcaccacc ccagtctcgc tcagccaact ctgcaagatt aggggtaaaa
6241 cttctagcaa tgctagggtg ctcaacttaa gtgaggtgga tggcacacct tttatccccc
6301 ttgagtcacc agcgccagtc ggttttcccg acttgggagg ttgtgactgg catgtaaatt
6361 tcactttcca ggcccaaaat caggacccat cccaaagtgt gacctttgca actaatgatg
6421 ctagctttgt cccttaccta ggtagcattt cccctcacaa tgggggggat tttcatgcag
6481 gtgacatcat aggtagcctt ggatggattt cagctccgtc tgacaactca caacttaatg
6541 tttggacaat accaaagtat ggatctagtc tcccagatgt cacccacctt gctcctgctg
6601 tgttcccccc aggctttggg gaagtgatcc tatacttcta ttctaccttc ccaggttctg
6661 ggcaacctag tcaacttcaa gtcccatgtt tgttacccca ggagttcatc actcacttct
6721 gtaatgaaca agctcccatt gctggggagg ctgccctcct ccactacgtg gaccctgata
6781 cgggccggaa cttgggggag ttcaaacttt accctgatgg atttatgacc tgtgtcccta
6841 atagtgttag tagtggccct caaaccctac ctatcaatgg agtctttgtc tttgtttcat
6901 gggtgtccag attctatcaa ctcaagcctg tgggaacggc ctcagcggct agaaggcttg
6961 gactgcggcg catataatgg ctcaagctgt catcggtgcc atagccgcgt ctgccgctgg
7021 tagcatacta ggggcaggta tacaggctgg tgctgaggct ggtctccagg ctcaacggta
7081 ccagcaggac ctacagttgc aacaaaattc ttttaagcat gataaggaaa tgttaggcta
7141 tcaagtacag gctagtaatg ctcttttagc taagaatctt aacactaggt atgctctcct
7201 gcaggcagga ggcctgtcta gtgctgatgc tgcccgggca gtggccggcg cccctgtcac
7261 ccgtatagtg gattggaatg gcacgcgcat tgcagcgccc gcctcaagtg ccaccacact
7321 tagatctggt ggttttatgg ctgtccctat accattgtct tcaaagacca agcaaccagt
7381 gatgtctggg caggacaatc caaattatgc tgcttcttct atctctagaa ctgcttcatg
7441 ggtgcaatct caaaattcta tgaggtctgt ctctcctttt cacagtgatg ctctgagaac
7501 cgtttgggtt acgccacccg gttcatcatc aacctcatct gtgcagtcta gtttttatgg
7561 tgtttttaat acagatagat tgcctctgtt cgcaaacaga aggtaaaatt ttgtaatagg
7621 atgccagtgg gcaccatatt cagatttggt ttaattagat tgttttaatc aaatttggct
7681 taattggtgt t
//