Typing tool
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Typing tool
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Complete norovirus genomes
| JQ320073 | GII.4 Farmington Hills | |
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| GII.P4 Farmington Hills |
ORF1: 1..787
ORF2: 768..2390
ORF3: 2390..3196
LOCUS JQ320073 3242 bp RNA linear VRL 15-JUN-2012
DEFINITION Norovirus Hu/GII.4/NF2003/USA/2003 RNA-dependent RNA polymerase
gene, partial cds; and capsid protein and minor structural protein
VP2 genes, complete cds.
ACCESSION JQ320073
VERSION JQ320073.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/NF2003/USA/2003
ORGANISM Norovirus Hu/GII.4/NF2003/USA/2003
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3242)
AUTHORS Sestak,K., Feely,S., Fey,B., Dufour,J., Hargitt,E., Alvarez,X.,
Pahar,B., Gregoricus,N., Vinje,J. and Farkas,T.
TITLE Experimental inoculation of juvenile rhesus macaques with primate
enteric caliciviruses
JOURNAL PLoS ONE 7 (5), E37973 (2012)
PUBMED 22666426
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3242)
AUTHORS Farkas,T.
TITLE Direct Submission
JOURNAL Submitted (26-DEC-2011) Division of infectious Diseases, Cincinnati
Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati,
OH 45229, USA
FEATURES Location/Qualifiers
source 1..3242
/organism="Norovirus Hu/GII.4/NF2003/USA/2003"
/mol_type="genomic RNA"
/strain="NF2003"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:1141372"
/country="USA"
/collection_date="05-Mar-2003"
/note="genotype: GII.4"
CDS <1..787
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="AFB18012.1"
/translation="QQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTIS
INEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDI
KLDPEKLTAKLREYGLKPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAGWFGKLEQS
SILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPVFYSKISKLVIAELK
EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 768..2390
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AFB18013.1"
/translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGRIQGML
TQTTRGDGSTRGHKATVSTGDVHFTPKLGSIQFNTDTNNDFETGQNTKFTPVGVVQDG
NGTHQNEPQQWVLPSYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2390..3196
/note="ORF3"
/codon_start=1
/product="minor structural protein VP2"
/protein_id="AFB18014.1"
/translation="MAGAFFAGLASDVLGSGLGSLISAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMEVKRAMLLEGGFSETDASRGAIN
ASMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNPRATVPARGFSNVPS
NISTATSVYSNQTISTRLGSTAGSGTSVSSLPSTARTRSWIEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 acaacagaga gctgtgttgg cagcagctct agaaatcatg gttaaattct cctcagaacc
61 acatttggct caggtagtcg cagaagacct tctttctcct agcgtggtgg atgtgggtga
121 cttcacaata tcaatcaacg agggtctccc ctctggggta ccctgcacct ctcaatggaa
181 ctccatcgcc cactggcttc tcactctctg tgcgctctct gaagttacaa atctgtcccc
241 tgacatcata caggctaatt ccctcttctc cttttatggt gatgatgaga tcgttagcac
301 ggacataaaa ttggacccag agaagttgac agcaaagctc agagaatatg ggctgaaacc
361 aacccgccct gacaaaactg aagggcccct tgctatctct gaagacttaa atggtctgac
421 tttcctgcgg agaactgtga cccgcgaccc agctggttgg tttggaaaac tggagcagag
481 ttcaatactc aggcaaatgt actggactag gggccccaac catgaagacc catctgaaac
541 aatgattcca cactcccaaa gacccataca gttgatgtcc ttactgggag aggccgcact
601 ccacggccca gtattctaca gcaaaatcag caagttagtc attgcagagc taaaagaagg
661 tggcatggat ttttacgtgc ccaggcaaga gccaatgttc agatggatga gattctcaga
721 tctgagcacg tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
781 cgaatgacgc caacccatct gatgggtcca cagccaacct cgtcccagag gtcaacaatg
841 aggttatggc tttggagccc gttgttggtg ccgctattgc ggcacctgta gcgggccaac
901 aaaatgtaat tgacccctgg attagaaata attttgtaca agcccctggt ggagagttta
961 cagtatcccc tagaaacgct ccaggtgaaa tactatggag cgcgcccttg ggccccgatc
1021 tgaatcccta cctttctcat ttggccagaa tgtacaatgg ctatgcaggt ggctttgaag
1081 tgcaggtaat ccttgcgggg aatgcgttca ccgccgggaa agtcatattt gcagcagtcc
1141 caccaaattt cccaactgaa ggcttgagcc ccagccaggt cactatgttc ccccatatag
1201 tagtagatgt taggcaactg gaacctgtgt tgatcccctt acctgatgtt aggaacaatt
1261 tctatcacta caaccaatca aatgacccca ccattaaact gatagcaatg ctgtacacac
1321 cacttagggc taataatgct ggggaagatg tcttcacagt ctcttgtcga gtcctcacga
1381 ggccatcccc cgattttgat ttcatatttt tggtgccacc cacagttgag tcaagaacta
1441 aaccattcac cgtcccaatt ttaactgttg aggaaatgac caattcaaga ttccccattc
1501 ctttggaaaa gttgttcacg ggtcctagcg gtgcctttgt tgttcaacca caaaatggca
1561 ggtgcacgac tgatggcgtg ctcttaggca ctacccaact gtctcctgtc aacatctgca
1621 ccttcagagg ggatgtcacc cacattgcag gtactcataa ttacacaatg aatttggctt
1681 ctcaaaattg gaacaattat gacccaacag aagaaatccc agcccctctg gggaccccag
1741 atttcgtggg aaggatccaa ggcatgctca cccaaactac aaggggagat ggctctaccc
1801 gcggtcacaa agctacagtg agcactgggg atgtccactt cactccaaag ctgggcagta
1861 ttcagttcaa cactgataca aacaatgatt ttgaaactgg ccaaaacacg aaattcaccc
1921 cagtcggtgt tgtccaggat ggtaatggta cccaccaaaa tgaacctcaa caatgggtgc
1981 tcccaagcta ctcaggtaga actggtcata atgtacacct agcccccgcc gtagccccca
2041 cttttccggg tgagcaactt cttttcttca ggtccactat gcccggatgc agcgggtacc
2101 ctaacatgaa tttggattgc ctactccccc aagaatgggt gcagcacttc taccaagagg
2161 cagccccagc acaatctgat gtggctctgc taagatttgt gaatccagac acaggtaggg
2221 ttctatttga gtgcaagctt cataaatcag gctatgtcac agtggctcac actggccagc
2281 atgatttggt catccccccc aatggctact ttagatttga ttcctgggtc aaccaattct
2341 acacacttgc ccccatggga aatgggacgg ggcgtagacg tgcattataa tggctggagc
2401 tttcttcgcc gggctggcat ctgatgtcct tggctctgga cttggttccc taatcagtgc
2461 tggggctggg gccatcaacc aaaaagttga atttgaaaat aacagaaaat tgcaacaagc
2521 ttccttccaa tttagtagca atctacagca ggcttccttt caacatgata aagagatgct
2581 ccaagcacaa attgaggcca ctaaaaagtt gcaacagggt atgatggaag ttaaacgggc
2641 aatgctccta gagggtggat tctctgaaac agatgcatct cgtggggcaa tcaacgcctc
2701 catgacaaag gctttggact ggagcggaac aaggtactgg gctcctgatg ctaggactac
2761 aacatacaat gcaggccgct tttccacccc tcaaccctcg ggggcactgc caggaaggac
2821 caatcccagg gctactgtcc ccgctcgggg cttctccaat gtaccttcta atatttctac
2881 tgctacttct gtgtattcaa atcaaactat ttcaacgaga cttggttcta cagctggttc
2941 tggcaccagt gtctcgagtc tcccgtcaac tgcaaggact aggagttgga ttgaggatca
3001 aaacaggaat ttgtcacctt tcatgagggg agctcacaac atatcgtttg tcaccccacc
3061 atctagtaga tcctctagcc aaggcacagt ctcaaccgtg cctaaagaag ttttggactc
3121 ctggactggc gctttcaaca cgcgcaggca gcctctcttc gctcacattc gtaagcgagg
3181 ggagtcacgg gcgtaatgtg aaaagacaaa attgattatc tttcctttct ttagtgtctt
3241 tt
//