Typing tool
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Typing tool
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Complete norovirus genomes
| JQ320072 | GII.2 | |
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| GII.P21 |
ORF1: 1..787
ORF2: 768..2396
ORF3: 2396..3163
LOCUS JQ320072 3201 bp RNA linear VRL 15-JUN-2012
DEFINITION Norovirus Hu/GII.2/NF2002/USA/2002 RNA-dependent RNA polymerase
gene, partial cds; and capsid protein and minor structural protein
VP2 genes, complete cds.
ACCESSION JQ320072
VERSION JQ320072.1
KEYWORDS .
SOURCE Norovirus Hu/GII.2/NF2002/USA/2002
ORGANISM Norovirus Hu/GII.2/NF2002/USA/2002
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3201)
AUTHORS Sestak,K., Feely,S., Fey,B., Dufour,J., Hargitt,E., Alvarez,X.,
Pahar,B., Gregoricus,N., Vinje,J. and Farkas,T.
TITLE Experimental inoculation of juvenile rhesus macaques with primate
enteric caliciviruses
JOURNAL PLoS ONE 7 (5), E37973 (2012)
PUBMED 22666426
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3201)
AUTHORS Farkas,T.
TITLE Direct Submission
JOURNAL Submitted (26-DEC-2011) Division of infectious Diseases, Cincinnati
Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati,
OH 45229, USA
FEATURES Location/Qualifiers
source 1..3201
/organism="Norovirus Hu/GII.2/NF2002/USA/2002"
/mol_type="genomic RNA"
/strain="NF2002"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:1141371"
/country="USA"
/collection_date="03-May-2002"
/note="genotype: GII.2"
CDS <1..787
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="AFB18009.1"
/translation="QQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVMDVGDFKIS
INEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDI
KLDPDKLTTKLKEYGLQPSRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQS
SILRQMYWTRGPNHEDPSETMIPHSQRPIQPMSLLGEAALHGPSFYGKISKLVISELK
EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 768..2396
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AFB18010.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVEFKTKPFTLPILTLGEMSNSRFPVPIDQMYTSPNEIISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGQVTAHLQDNEHLYNVTITNLNGSPFDPSEDIPAPLGVPDFEGRVFG
VISQRDNYNSGGQNQPANRSHDAVVPTYTAQYTPKLGQIQIGTWQTDDITVDQPAKFT
PVGLSDTDHSNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGFGNPA
IDCLVPQEWIQHFYQEAAPSLSEVALARYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
CDS 2396..3163
/note="ORF3"
/codon_start=1
/product="minor structural protein VP2"
/protein_id="AFB18011.1"
/translation="MAGAFIAGLAGDVLSNGLGSLINAGANAINQRAEFDFNQQLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPSSMRTTSYSGRFTSTTPIRQADFQHTQTRPSSGSSVASYSTQSSRPTSITTA
GSSTTSNSTRSTNLPSTVSRATSRTSEWVRDQNRNLEPYMRGALQTAFVTPPSSRASD
GTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 acaacaaaga gcagtgctgg ctgcagctct ggagataatg gtcaaattct catcagaacc
61 tcatctggcc caagtggttg cggaagacct cttgtccccc agtgtgatgg atgtgggtga
121 tttcaagata tcgatcaatg aggggttacc ctctggtgta ccttgcacct cacaatggaa
181 ctccattgcc cattggctcc tcacactatg tgcactatct gaagtcacag atctgtcccc
241 tgacatcatc caggcaaact ccctgttctc cttttatggt gatgatgaaa tagtgagcac
301 agatatcaaa ttggacccag acaaactgac aacaaaattg aaggaatacg gactacaacc
361 atcccgtcct gataaaacag aaggaccctt aattatctct gaagatttgg atggcctgac
421 cttcttacgg aggacggtga cccgcgatcc ggctgggtgg tttggcaaac tggaccaaag
481 ttcaatactc agacagatgt actggaccag gggaccaaac catgaggacc cctctgaaac
541 aatgatacca cactcccaaa gacccataca accgatgtca ctactgggtg aagctgcatt
601 acatggccca tcattctacg gtaaaatcag caaactggtc atctcagaat tgaaagaggg
661 tgggatggat ttttacgtgc ctagacaaga accaatgttt aggtggatga gattctcaga
721 tttgagcacg tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
781 cgaatgacgc cgctccatct actgatggtg cagccggcct cgtgccagaa agtaataatg
841 aggtcatggc tcttgagcca gtggctggcg ctgccttggc ggctccagtc actggccaaa
901 caaatattat agacccttgg attagaacaa attttgtcca ggcccctaat ggtgaattca
961 ctgtttctcc acgcaacgcc cctggtgaag tgctgttaaa tctagagttg ggtccagaat
1021 taaatcctta tctggcacat ttggcaagaa tgtacaacgg gtatgccggc ggaatggagg
1081 tgcaggtcat gttagctgga aatgcgttta cagctggaaa gttggtcttc gccgcagtcc
1141 cacctcattt tcccgttgaa aatcttagcc cacagcaaat cacaatgttt ccccatgtga
1201 ttattgatgt taggactttg gaacctgtcc tgttaccact ccctgatgtt agaaataatt
1261 tctttcatta caatcaaaag gatgacccta agatgagaat tgtggctatg ctctatactc
1321 ccctcagatc aaatggttct ggtgatgatg tattcacagt ttcttgtaga gtgttaacta
1381 ggccctcccc tgactttgat tttacgtatt tggtgccacc aacggtggaa ttcaaaacaa
1441 agccattcac actcccaatc cttacattag gggagatgtc caattcaaga ttcccagtgc
1501 ccatagatca aatgtacact agccctaatg aaattatttc tgtgcagtgt cagaatggca
1561 ggtgcacact ggacggggag ctccaaggga caacacagct ccaggtcagt ggtatttgcg
1621 cattcaaagg acaagtgacc gcccacctac aggacaatga acatctttac aatgtcacca
1681 tcacaaattt gaatgggtcc ccttttgacc cctctgagga catccccgct cccctgggtg
1741 ttcccgactt tgaagggagg gttttcggtg tcatcagcca aagagataat tacaattctg
1801 gtggacaaaa ccagcctgca aataggtctc atgatgctgt ggtcccaact tacacagctc
1861 aatatactcc aaaattgggt caaattcaaa ttggcacgtg gcagactgat gatataacag
1921 tcgaccagcc tgctaaattc accccagttg gccttagtga cacagaccac tctaaccaat
1981 gggtggttcc taggtatgct ggtgcattaa atttgaacac aaatcttgcc ccttccgttg
2041 caccggtgtt cccaggagag cggttgcttt tctttagatc atacatcccc cttaaaggtg
2101 gttttggcaa cccagccatt gattgcctgg tgccacagga gtggatacag cacttctacc
2161 aagaagctgc tccctcactg agtgaggtcg cccttgccag gtatatcaat ccggacactg
2221 gtcgggcact gtttgaggcc aagctccaca gggctggctt catgacagtc tcgagtaaca
2281 ccagtgcccc ggtggttgta cctgccaatg ggtacttcag atttgattct tgggtgaacc
2341 aattttattc tcttgccccc atgggaactg gcaatgggcg tagaaggatt caataatggc
2401 tggtgctttt attgctggtt tagcaggaga cgtgctcagt aatgggctcg gctcattaat
2461 caatgcaggt gccaatgcaa ttaatcagag agcagaattt gattttaatc aacagttaca
2521 acaaaattct tttaatcatg ataaggagat gttgcaggct caaatacagg caaccaagca
2581 gctgcaggct gacatgatgg ctataaagca gggggtgttg actgctggcg gcttctcccc
2641 cgctgatgca gccaggggcg ctgtaaacgc gcccatgaca caagcgctag attggaatgg
2701 cacaaggtac tgggcaccaa gttccatgag aacaacatcc tattccggaa gattcacatc
2761 aaccacccca ataagacagg ctgattttca gcacacccaa acccggcctt caagtggttc
2821 ttccgtggcc tcctactcca cacagtcttc aagaccaacc tcaataacaa ctgcggggtc
2881 ttcaaccaca tccaactcga cccgcagtac aaatctcccc tcgacagttt ctagggccac
2941 ctctagaact agtgagtggg ttagagatca aaataggaat ttggaaccct acatgcgtgg
3001 tgccttacaa acagcctttg tcacaccacc ttctagtagg gcatctgatg ggacggtctc
3061 aaccgtcccc aagggtgttt tggactcctg gacacctgcg tttaacaccc gcaggcagcc
3121 gctctttgca cacctccgta agagggggga gtcacaagct tagtgaaaag gaaaacttta
3181 aaatgatttg atttgtcttt t
//