Typing tool
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Typing tool
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Complete norovirus genomes
| JN899245 | GII.21 | |
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| GII.P21 |
ORF1: 1..831
ORF2: 812..2431
ORF3: 2431..3189
LOCUS JN899245 3218 bp RNA linear VRL 12-MAR-2012
DEFINITION Norovirus Hu/GII.21/Salisbury150/2011/USA RNA-dependent RNA
polymerase gene, partial cds; and major capsid protein and minor
capsid protein genes, complete cds.
ACCESSION JN899245
VERSION JN899245.1
KEYWORDS .
SOURCE Norovirus Hu/GII.21/Salisbury150/2011/USA
ORGANISM Norovirus Hu/GII.21/Salisbury150/2011/USA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3218)
AUTHORS Barclay,L., Vega,E. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2011) National Calicivirus Laboratory, CDC, 1600
Clifton Rd. MS G04, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3218
/organism="Norovirus Hu/GII.21/Salisbury150/2011/USA"
/mol_type="genomic RNA"
/strain="Hu/GII.21/Salisbury150/2011/USA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1156981"
/country="USA"
/collection_date="Mar-2011"
/note="genotype: GII.21"
CDS <1..831
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AFC89664.1"
/translation="ALYHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAED
LLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANS
LFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRT
VTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGP
SFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE
"
CDS 812..2431
/codon_start=1
/product="major capsid protein"
/protein_id="AFC89665.1"
/translation="MKMASNDAAPSNDGATGLVPEINTETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRNNFVQAPNGEFTVSPRNSPGEILMNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVDMLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNVFYHFNNQPAPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFTLPILTIGELTNSRFPAPIDQLYTSPNADVVVQPQNGRCTLDGELQGTT
QLLTTAICSYRGMTSNPTSDYWDDHLLHLVHPNGATYDPTEDVPAPFGTQDFRGILYG
MLTQNPRTSGDEAANSHGIYISSTSEKFTPKLGTIGLHQVQGDIASNQQSKFTPVGIA
VNGNTPFRQWELPNYSGALTLNTNLAPAVGPNFPGEQILFFRSNVPSVQGGQPIEIDC
LIPQEWVSHFYQESAPSQSDVALVRYVNPDTGRTIFEAKLHRQGFITIAATGSNPVVV
PPNGYFRFDSWVNQFYALAPMGTGNGRRRVQ"
CDS 2431..3189
/note="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="AFC89666.1"
/translation="MAGAFIAGLAGDMLTNAVGSLVTAGANAINQKVEYDFTKQLQSA
SFQHDKDMLQAQINATKQLQSDMMAIKAGVLTAGGFSPADAARGAVNAPMTKVLDWSG
TRYWAPNSTKTTSQSGQFSSTTVHRPFVQSKTVQPSPSRALSSSGSVRSLSTQSTMLS
NSSSSSRGTPSTQSTDISSSRTADWVRSQRSLSPYMDGALQTAFVTPPSSRASSTGTV
STVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
3'UTR 3193..3218
ORIGIN
1 gccctttacc actatgatgc agattactcc cgctgggact cgacacagca aagagcagtg
61 ctggctgcag ccctggaaat aatggtcaaa ttttcatcag aacctcatct ggcccaagtg
121 gttgcagaag acctcttgtc ccccagtgtg atggacgtgg gtgatttcaa gatatcaatc
181 aatgaggggt taccctctgg tgtgccttgc acctcacagt ggaactccat tgcccactgg
241 ctcctcacac tatgtgcact gtcagaagtc acagatctgt cccctgacat catccaggca
301 aactccctat tctcctttta tggtgatgat gaaatagtga gcacagatat caaattggac
361 ccagagaaac tgacagcaaa gttgaaggaa tacgggctaa aaccaacccg tcctgataaa
421 acagaaggac ccttaattat ctctgaagac ttggacggcc tgaccttctt acggagaacg
481 gtgacccgcg atccggctgg gtggtttggc aaactggacc aaagttcaat actcagacaa
541 atgtactgga ccaggggacc aaaccatgag gacccctctg aaacaatgat accacactcc
601 caaagaccca tacaactgat gtcactactg ggtgaagctg cactacatgg cccatcattc
661 tatagtaaaa tcagcaagtt ggtcatctca gaattgaaag agggtgggat ggacttttac
721 gtgcccagac aagaaccaat gtttaggtgg atgaggttct cagatttgag cacgtgggag
781 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgccgctcc
841 atctaatgat ggtgctacag gtctcgtacc agagatcaac actgagacct tgcctctcga
901 gcccgtggcc ggagcggcaa ttgctgcccc tgttacgggc caaaataata taattgatcc
961 ctggattaga aataattttg tgcaggcgcc taatggtgag tttacagttt cccctagaaa
1021 ttcccctggt gaaattttaa tgaatttgga gttagggcca gatcttaatc catatttggc
1081 tcacctttca agaatgtaca atggttatgc tggaggtgta gaagtgcaag tgctcctagc
1141 tgggaatgcg ttcacggcag gaaagatcct ttttgcagca gtccccccaa atttccccgt
1201 tgatatgctc agtcctgctc aaatcacaat gcttccccat ttaattgtag atgttagaac
1261 tttggagccc attatgatcc ctctgcccga tgttaggaat gttttctatc actttaataa
1321 ccagcctgcc ccaagaatga gattggttgc catgctctac acccctttaa gatccaatgg
1381 gtccggtgat gacgtattca ccgtctcctg cagggtgcta actagaccta ctccggactt
1441 tgagtttaca tacttagtcc ccccctcggt agagtccaaa accaaacctt tcaccctacc
1501 catcctaaca attggagagt tgacaaactc tagatttcca gccccgatcg atcagttgta
1561 cacttcaccc aacgctgatg tagttgtcca accccaaaat ggccggtgca cactggatgg
1621 tgagctacaa ggtacaacac aacttttgac aacagcaata tgctcataca ggggcatgac
1681 atcaaacccc actagtgact actgggatga tcacctcctg cacctggtcc accccaatgg
1741 ggcaacatat gacccgaccg aggacgtgcc agctcctttt ggcacgcagg actttcgggg
1801 cattctgtat gggatgttga ctcaaaaccc ccgaacctcc ggggacgaag ccgccaactc
1861 ccatgggatc tacatctcat ccaccagtga aaagttcact ccaaaattgg gtacaattgg
1921 cttacaccaa gtgcaaggcg acatagccag caaccaacag tcaaaattca caccagtagg
1981 gatagcagtg aatggcaaca ctcctttcag gcagtgggaa ctcccaaact actctggtgc
2041 tctcaccctc aacacaaacc ttgcaccagc ggttgggccc aacttccctg gggagcaaat
2101 ccttttcttc aggtcaaatg ttccaagtgt tcaaggtggc caacctatag agattgattg
2161 cctgatccca caagaatggg tctcccattt ctatcaagaa tcagccccct ctcagagtga
2221 tgtggccttg gtcaggtatg tcaaccctga cacagggcgc acaatctttg aggccaaatt
2281 gcataggcag ggatttatca ccatagcggc cactggaagc aaccccgtgg tcgtgcctcc
2341 caatgggtat ttcagatttg attcctgggt caaccagttt tatgcactcg cccccatggg
2401 aactgggaat gggcgcagaa gagttcagta atggctggag ctttcatagc aggattggca
2461 ggtgacatgc tcaccaacgc tgttggttcc ctggtcacag cgggggccaa cgctataaac
2521 caaaaagttg aatatgactt caccaaacaa ctgcaaagtg cctccttcca gcatgacaag
2581 gacatgcttc aagcccagat caacgcaaca aaacaattgc agagtgacat gatggccatc
2641 aaagcagggg ttttgaccgc tggcggcttt tcccctgctg atgcagccag aggggcagtc
2701 aatgccccaa tgacaaaagt cttagattgg tcagggacgc gttactgggc acccaactca
2761 accaaaacaa caagccaatc tggccagttc tcctccacaa ctgtacatag accctttgtt
2821 caatcaaaaa ctgtccaacc atctccttcg cgggcgctct catcttcggg tagcgttcgc
2881 agcctctcta ctcaatcaac aatgctttca aattctagct cctcttctcg tgggactcct
2941 tcaactcaat caacagatat ttcttcctcg cgaacagcag actgggttcg aagtcagagg
3001 agcctgagcc cctatatgga tggggctctg cagacagcct ttgtcacccc accatcaagc
3061 agagcttctt ctacaggcac cgtctcaaca gtgcctaaag gggttttgga ctcctggaca
3121 cctgcgttca acacccgcag gcagccgctt ttcgcacacc tcaggaagag gggggagtca
3181 caagcctagt gaaaagaatt attttaataa attcttgc
//