Typing tool
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Typing tool
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Complete norovirus genomes
| JN899243 | GI.7 | |
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| GI.P7 |
ORF1: 1..688
ORF2: 672..2288
ORF3: 2288..2935
LOCUS JN899243 3064 bp RNA linear VRL 12-MAR-2012
DEFINITION Norovirus Hu/GI.7/Providence191/2010/USA RNA-dependent RNA
polymerase gene, partial cds; and major capsid protein and minor
capsid protein genes, complete cds.
ACCESSION JN899243
VERSION JN899243.1
KEYWORDS .
SOURCE Norovirus Hu/GI.7/Providence191/2010/USA
ORGANISM Norovirus Hu/GI.7/Providence191/2010/USA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3064)
AUTHORS Barclay,L., Vega,E. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2011) National Calicivirus Laboratory, CDC, 1600
Clifton Rd. MS G04, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3064
/organism="Norovirus Hu/GI.7/Providence191/2010/USA"
/mol_type="genomic RNA"
/strain="Hu/GI.7/Providence191/2010/USA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1156979"
/geo_loc_name="USA"
/collection_date="Sep-2010"
CDS <1..688
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="AFC89658.1"
/translation="PLEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCALSEVT
GLAPDVLQSQSYFSFYGDDEIVSTDVEFDPIKLTQVLREYGLKPTRPDKSEGPIIVKQ
QIDGLVFLRRTISKDAAGYQGRLDRNSIERQLWWTRGPNHDDPFETLIPHQQRKIQLI
SLLGEAALHGEKFYRKIANRVIQEVKEGGLELYIPGWQAMFRWMRFHDLSMWTGDRNL
LPDYVNDDGV"
CDS 672..2288
/codon_start=1
/product="major capsid protein"
/protein_id="AFC89659.1"
/translation="MMMASKDAPSNMDGTSGAGQLVPEVNTAEPLPLEPVVGAATAAA
TAGQVNLIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLRLGPHLNPFLLHLSQMYNG
WVGNMRIRVMLAGNAFSAGKIIICCVPPGFESQNISIGQATMFPHVIADVRVLEPIEI
PLDDVRNVLYHTNENRPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPAPDFNFL
FLVPPSVEQKTRQLTIPNIPLNNLANSRVPAMINKMAVSADQNQVVQFQNGRCTLEGQ
LLGTTPVSANQVARIRGKVFSTNSGTGLNLTETDGTPYHAFESPAPLGFPDIGDCDWH
VYAFKVNQNTGDPMYRLDITQGNSFAPHLGSIEFTSDQHPSGDQLGTLTWISPLNNAS
RVDPWKIPSYGSTLTESTNLAPPIFPPGFGEAIVYFMSDFPIVSGNTTQIPCTLPQEF
ISSFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCVPNTGGGPQNLPSNGV
FIFSSWVSRYYQLKPVGTAGPARRLGVRRI"
CDS 2288..2935
/note="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="AFC89660.1"
/translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN
SFKHDERMLGLQIEGSNALLQKNLSTRYNLLVGAGLSSADAARSIAGAPVTKIVDWNG
VRIAAPASTATTLRSGNFMSIPVTPKKEPQKLPARSVGLSNPNYDSSTMISRTTQWVE
SQNSIRNLSPFHSSALRTTWVTPPGSTSTSTFSTVSSAPRYFNTERLPLFANNRK"
3'UTR 2936..3064
ORIGIN
1 gcccttagag atggatgtgg gggattatgt gatcagtgtt aaggatggcc tcccctcagg
61 gttcccatgc acctcacaag tgaacagcat aaaccattgg atttacaccc tatgtgccct
121 atcagaggtc acaggcctgg cccctgatgt tctgcaatcc cagtcttact tttccttcta
181 tggggatgat gagatagtgt caactgatgt tgaatttgac ccaataaagc tcacccaagt
241 gctcagagag tatggtttga aacccacccg acctgacaaa tcagaagggc ccattatagt
301 gaaacaacag atagatgggc tggtcttcct cagacgcacc atatcaaaag acgctgctgg
361 ttaccagggg cgtttagatc gcaactccat tgaaaggcaa ctgtggtgga ctcggggacc
421 aaaccatgac gacccctttg agactctgat accccatcaa caaaggaaga ttcagttgat
481 atccctgctt ggtgaggctg cactccatgg agagaaattt tacaggaaga tagccaatag
541 ggtgatacag gaagttaagg agggagggct tgagctctac ataccaggtt ggcaggccat
601 gtttcgctgg atgcgatttc atgacttgag catgtggaca ggagatcgca atctactgcc
661 tgattatgta aatgatgatg gcgtctaagg acgccccctc aaacatggat ggcaccagtg
721 gtgccggtca gctagttcca gaggttaata cagctgaacc tctacccctt gaaccggtgg
781 tgggcgccgc aactgcggcg gccactgctg gacaggttaa tttaatagac ccctggatca
841 tgaataattt tgtccaagcc cctgaaggcg agttcactat ttcacccaac aatacccccg
901 gagatatttt atttgatttg cgtctggggc cacaccttaa ccccttcctc ctacatttgt
961 cccagatgta taatggttgg gttgggaaca tgagaattag ggtcatgctt gcagggaacg
1021 cgttctctgc tggtaagatc ataatttgtt gtgtcccacc tggctttgaa tcccagaaca
1081 tatcaattgg acaagccact atgttccccc atgtcatagc tgatgtaaga gtcctggagc
1141 ccatagagat cccccttgat gatgtgcgca atgtcctgta ccacacaaat gagaaccgcc
1201 caaccatgcg attgctctgc atgttataca cacctctccg tgctggagga gcttcatcag
1261 gcacagaccc ttttgtcatt gctggccgtg tgttaacttg ccctgcccct gactttaatt
1321 ttctgtttct tgtgcccccc agtgtagaac agaaaaccag gcaattgact atacccaata
1381 tacccttgaa caatttggct aactccagag tgcctgcaat gataaacaag atggcagtct
1441 ctgctgatca gaatcaggtg gtccagtttc aaaatggccg ttgcacactt gaaggacaac
1501 tcttaggtac aactcctgtt tcagccaacc aagttgcccg catacgtggc aaagtcttct
1561 ccaccaactc cgggacggga cttaatttaa ctgaaacaga tggaaccccc taccatgcat
1621 ttgagagccc ggcccctctc ggttttcctg atataggtga ttgtgattgg catgtgtatg
1681 cttttaaggt gaatcaaaac acaggggatc ccatgtacag attggatata acacaaggaa
1741 actcatttgc gccgcatctt ggctccatcg agtttacttc tgatcagcac ccatcaggag
1801 atcaattagg cacacttact tggatctccc ctctcaacaa tgcctccagg gttgatccct
1861 ggaaaatccc atcatatggt tcaacattga ctgagtccac taacctggca ccacccatct
1921 ttccaccagg ctttggtgag gccatagtct acttcatgtc agatttccct attgtgtcag
1981 gtaacactac ccaaatcccc tgtaccctgc cccaagagtt catctcatcc tttgtggaac
2041 aacaggcacc aatccgaggt gaggctgctc tactgcatta tgtggaccca gatacccatc
2101 gcaatctggg agaattcaaa ctgtaccctg atgggttcat cacttgtgtg ccaaacacgg
2161 gtggcggccc ccaaaacctc ccttcaaatg gtgtttttat cttttcttct tgggtctcta
2221 gatattatca attgaagcct gtgggaacag ccggtccggc taggcggctt ggtgtgagaa
2281 ggatataatg gctcaagcca ttataggagc tattgccgcc accgctgctg gcagcgcagt
2341 gggggcagga atccaagctg gaactgaggc agccttgcaa taccaaaggt tccaacaaga
2401 cctcaccctg caggagaatt cttttaaaca tgatgaaagg atgttgggtt tacaaattga
2461 ggggtctaat gctttgctac aaaagaatct ttctactcgc tataatcttt tagttggtgc
2521 aggtctttcc tcagctgatg ccgcaaggtc cattgctggg gccccagtga caaaaatcgt
2581 ggactggaat ggggtgagaa ttgctgcccc tgcatccact gccaccactc tccgttctgg
2641 caacttcatg agcataccag ttacacctaa aaaggagccc caaaaactgc cagcacgttc
2701 tgtgggcctc tccaatccta attatgattc atccactatg atttctagga caactcaatg
2761 ggtggagtcg caaaattcaa tcaggaattt gtcacctttc catagctctg ctttgaggac
2821 tacttgggta acccctcctg gttctacttc tacttcaacc ttttctactg tttcttcggc
2881 gccacgatat tttaacaccg agcgccttcc tttgttcgca aacaatagga aatagttttt
2941 gtaatataat gtgggcatca tattcatatt tggtttatta attggattaa tttgattaat
3001 tggatatttc atatttggtt tattaattgg attaatttga ttaattggat ttgaattgga
3061 tgtt
//