Typing tool
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Complete norovirus genomes
JN899243 | GI.7 | ||
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GI.P7 |
ORF1: 1..688 ORF2: 672..2288 ORF3: 2288..2935LOCUS JN899243 3064 bp RNA linear VRL 12-MAR-2012 DEFINITION Norovirus Hu/GI.7/Providence191/2010/USA RNA-dependent RNA polymerase gene, partial cds; and major capsid protein and minor capsid protein genes, complete cds. ACCESSION JN899243 VERSION JN899243.1 KEYWORDS . SOURCE Norovirus Hu/GI.7/Providence191/2010/USA ORGANISM Norovirus Hu/GI.7/Providence191/2010/USA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3064) AUTHORS Barclay,L., Vega,E. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (24-OCT-2011) National Calicivirus Laboratory, CDC, 1600 Clifton Rd. MS G04, Atlanta, GA 30333, USA FEATURES Location/Qualifiers source 1..3064 /organism="Norovirus Hu/GI.7/Providence191/2010/USA" /mol_type="genomic RNA" /strain="Hu/GI.7/Providence191/2010/USA" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1156979" /country="USA" /collection_date="Sep-2010" CDS <1..688 /codon_start=2 /product="RNA-dependent RNA polymerase" /protein_id="AFC89658.1" /translation="PLEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCALSEVT GLAPDVLQSQSYFSFYGDDEIVSTDVEFDPIKLTQVLREYGLKPTRPDKSEGPIIVKQ QIDGLVFLRRTISKDAAGYQGRLDRNSIERQLWWTRGPNHDDPFETLIPHQQRKIQLI SLLGEAALHGEKFYRKIANRVIQEVKEGGLELYIPGWQAMFRWMRFHDLSMWTGDRNL LPDYVNDDGV" CDS 672..2288 /codon_start=1 /product="major capsid protein" /protein_id="AFC89659.1" /translation="MMMASKDAPSNMDGTSGAGQLVPEVNTAEPLPLEPVVGAATAAA TAGQVNLIDPWIMNNFVQAPEGEFTISPNNTPGDILFDLRLGPHLNPFLLHLSQMYNG WVGNMRIRVMLAGNAFSAGKIIICCVPPGFESQNISIGQATMFPHVIADVRVLEPIEI PLDDVRNVLYHTNENRPTMRLLCMLYTPLRAGGASSGTDPFVIAGRVLTCPAPDFNFL FLVPPSVEQKTRQLTIPNIPLNNLANSRVPAMINKMAVSADQNQVVQFQNGRCTLEGQ LLGTTPVSANQVARIRGKVFSTNSGTGLNLTETDGTPYHAFESPAPLGFPDIGDCDWH VYAFKVNQNTGDPMYRLDITQGNSFAPHLGSIEFTSDQHPSGDQLGTLTWISPLNNAS RVDPWKIPSYGSTLTESTNLAPPIFPPGFGEAIVYFMSDFPIVSGNTTQIPCTLPQEF ISSFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCVPNTGGGPQNLPSNGV FIFSSWVSRYYQLKPVGTAGPARRLGVRRI" CDS 2288..2935 /note="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="AFC89660.1" /translation="MAQAIIGAIAATAAGSAVGAGIQAGTEAALQYQRFQQDLTLQEN SFKHDERMLGLQIEGSNALLQKNLSTRYNLLVGAGLSSADAARSIAGAPVTKIVDWNG VRIAAPASTATTLRSGNFMSIPVTPKKEPQKLPARSVGLSNPNYDSSTMISRTTQWVE SQNSIRNLSPFHSSALRTTWVTPPGSTSTSTFSTVSSAPRYFNTERLPLFANNRK" 3'UTR 2936..3064 ORIGIN 1 gcccttagag atggatgtgg gggattatgt gatcagtgtt aaggatggcc tcccctcagg 61 gttcccatgc acctcacaag tgaacagcat aaaccattgg atttacaccc tatgtgccct 121 atcagaggtc acaggcctgg cccctgatgt tctgcaatcc cagtcttact tttccttcta 181 tggggatgat gagatagtgt caactgatgt tgaatttgac ccaataaagc tcacccaagt 241 gctcagagag tatggtttga aacccacccg acctgacaaa tcagaagggc ccattatagt 301 gaaacaacag atagatgggc tggtcttcct cagacgcacc atatcaaaag acgctgctgg 361 ttaccagggg cgtttagatc gcaactccat tgaaaggcaa ctgtggtgga ctcggggacc 421 aaaccatgac gacccctttg agactctgat accccatcaa caaaggaaga ttcagttgat 481 atccctgctt ggtgaggctg cactccatgg agagaaattt tacaggaaga tagccaatag 541 ggtgatacag gaagttaagg agggagggct tgagctctac ataccaggtt ggcaggccat 601 gtttcgctgg atgcgatttc atgacttgag catgtggaca ggagatcgca atctactgcc 661 tgattatgta aatgatgatg gcgtctaagg acgccccctc aaacatggat ggcaccagtg 721 gtgccggtca gctagttcca gaggttaata cagctgaacc tctacccctt gaaccggtgg 781 tgggcgccgc aactgcggcg gccactgctg gacaggttaa tttaatagac ccctggatca 841 tgaataattt tgtccaagcc cctgaaggcg agttcactat ttcacccaac aatacccccg 901 gagatatttt atttgatttg cgtctggggc cacaccttaa ccccttcctc ctacatttgt 961 cccagatgta taatggttgg gttgggaaca tgagaattag ggtcatgctt gcagggaacg 1021 cgttctctgc tggtaagatc ataatttgtt gtgtcccacc tggctttgaa tcccagaaca 1081 tatcaattgg acaagccact atgttccccc atgtcatagc tgatgtaaga gtcctggagc 1141 ccatagagat cccccttgat gatgtgcgca atgtcctgta ccacacaaat gagaaccgcc 1201 caaccatgcg attgctctgc atgttataca cacctctccg tgctggagga gcttcatcag 1261 gcacagaccc ttttgtcatt gctggccgtg tgttaacttg ccctgcccct gactttaatt 1321 ttctgtttct tgtgcccccc agtgtagaac agaaaaccag gcaattgact atacccaata 1381 tacccttgaa caatttggct aactccagag tgcctgcaat gataaacaag atggcagtct 1441 ctgctgatca gaatcaggtg gtccagtttc aaaatggccg ttgcacactt gaaggacaac 1501 tcttaggtac aactcctgtt tcagccaacc aagttgcccg catacgtggc aaagtcttct 1561 ccaccaactc cgggacggga cttaatttaa ctgaaacaga tggaaccccc taccatgcat 1621 ttgagagccc ggcccctctc ggttttcctg atataggtga ttgtgattgg catgtgtatg 1681 cttttaaggt gaatcaaaac acaggggatc ccatgtacag attggatata acacaaggaa 1741 actcatttgc gccgcatctt ggctccatcg agtttacttc tgatcagcac ccatcaggag 1801 atcaattagg cacacttact tggatctccc ctctcaacaa tgcctccagg gttgatccct 1861 ggaaaatccc atcatatggt tcaacattga ctgagtccac taacctggca ccacccatct 1921 ttccaccagg ctttggtgag gccatagtct acttcatgtc agatttccct attgtgtcag 1981 gtaacactac ccaaatcccc tgtaccctgc cccaagagtt catctcatcc tttgtggaac 2041 aacaggcacc aatccgaggt gaggctgctc tactgcatta tgtggaccca gatacccatc 2101 gcaatctggg agaattcaaa ctgtaccctg atgggttcat cacttgtgtg ccaaacacgg 2161 gtggcggccc ccaaaacctc ccttcaaatg gtgtttttat cttttcttct tgggtctcta 2221 gatattatca attgaagcct gtgggaacag ccggtccggc taggcggctt ggtgtgagaa 2281 ggatataatg gctcaagcca ttataggagc tattgccgcc accgctgctg gcagcgcagt 2341 gggggcagga atccaagctg gaactgaggc agccttgcaa taccaaaggt tccaacaaga 2401 cctcaccctg caggagaatt cttttaaaca tgatgaaagg atgttgggtt tacaaattga 2461 ggggtctaat gctttgctac aaaagaatct ttctactcgc tataatcttt tagttggtgc 2521 aggtctttcc tcagctgatg ccgcaaggtc cattgctggg gccccagtga caaaaatcgt 2581 ggactggaat ggggtgagaa ttgctgcccc tgcatccact gccaccactc tccgttctgg 2641 caacttcatg agcataccag ttacacctaa aaaggagccc caaaaactgc cagcacgttc 2701 tgtgggcctc tccaatccta attatgattc atccactatg atttctagga caactcaatg 2761 ggtggagtcg caaaattcaa tcaggaattt gtcacctttc catagctctg ctttgaggac 2821 tacttgggta acccctcctg gttctacttc tacttcaacc ttttctactg tttcttcggc 2881 gccacgatat tttaacaccg agcgccttcc tttgttcgca aacaatagga aatagttttt 2941 gtaatataat gtgggcatca tattcatatt tggtttatta attggattaa tttgattaat 3001 tggatatttc atatttggtt tattaattgg attaatttga ttaattggat ttgaattgga 3061 tgtt //