Typing tool
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Typing tool
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Complete norovirus genomes
| JN797508 | GII.1 | |
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| GII.P33 |
ORF1: 1..909
ORF2: 890..2497
ORF3: 2497..3270
LOCUS JN797508 3317 bp RNA linear VRL 20-FEB-2012
DEFINITION Norovirus Hu/GII.1/Ascension208/2010/USA RNA-dependent RNA
polymerase gene, partial cds; and major capsid protein and minor
capsid protein genes, complete cds.
ACCESSION JN797508
VERSION JN797508.1
KEYWORDS .
SOURCE Norovirus Hu/GII.1/Ascension208/2010/USA
ORGANISM Norovirus Hu/GII.1/Ascension208/2010/USA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3317)
AUTHORS Barclay,L., Vega,E. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (28-SEP-2011) National Calicivirus Laboratory, CDC, 1600
Clifton Rd. MS G04, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3317
/organism="Norovirus Hu/GII.1/Ascension208/2010/USA"
/mol_type="genomic RNA"
/strain="Hu/GII.1/Ascension208/2010/USA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1147126"
/country="USA"
/collection_date="Jun-2010"
/note="genotype: GII.1"
CDS <1..909
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AFA55173.1"
/translation="HCVTLPVRVGMNMNEDGPIIFEKHSRYTYHYDADYSRWDSTQQR
AVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEGLPSGVPCTSQWNS
IAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTVKLKEYGLK
PTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDP
SETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRW
MRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 890..2497
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AFA55174.1"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPFLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAIPPHFPLENLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELSNSRFPVPIDELYTSPNEGVVVQPQNGRSTLDGELLGTT
QLVPSNICALRGRINAQVPDDHHQWNLQVTNANGTSFDPTEDVPAPLGTPDFLANIYG
VTSQRNPDNTCRAHDGVLATWSPKFTPKLGSVVLGTWEESDLDLNQPTRFTPVGLYDT
GHFDQWVLPNYSGRLTLNMNLAPSVAPLFPGEQILFFRSHIPLKGGTSNGAIDCLLPQ
EWIQHFYQESAPSPTDVALIRYTNPDTGRVLFEAKLHRQGFITVANSGSRPIVVPPNG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 2497..3270
/note="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="AFA55175.1"
/translation="MAGAFVAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIALRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGATKTTAFSGGFTSSPNTRTIDLPRKTSTTPAPTPVSRPSSSASTVSTRSTI
VSWTSSLSPSTRSSFNSQPTSSSSRTSEWVRSQNRALEPYMRGALQTAYVTPPSSRAS
SNGTVSTVPKEVLDSWTSVFNTHRQPLFAHLRRRGESQV"
3'UTR 3271..3317
ORIGIN
1 cactgtgtca cacttcccgt cagggtgggg atgaacatga atgaggatgg tcccatcatt
61 tttgaaaaac actctaggta cacctaccat tatgatgcag actattctcg gtgggactca
121 acacagcaga gagctgtttt agctgcagcc ctggagatca tggtaaaatt ttccccagaa
181 ccacacctag ctcagattgt cgcagaagat ctcctatctc ccagcgtgat ggacgttggc
241 gattttaaaa tatcaatcac tgaaggactc ccctctgggg tgccttgcac ttcacaatgg
301 aactccattg ctcattggct cctcacgctc tgtgcactat ctgaggtaac agatttatct
361 cctgacatca tccaagcaaa ctcactcttc tctttctatg gtgatgatga aattgtgagc
421 acagacatta aactagatcc agaaaggcta acagtcaaac taaaagagta tggtctcaag
481 ccaacccgtc ctgacaagac tgaagggcct ctggtcattt ctgaggactt agatggtctg
541 accttcttgc ggagaactgt gacccgtgac ccagcaggtt ggtttggaaa attggaacaa
601 agctcaatac ttagacagat gtattggacc aggggcccca atcatgagga cccctctgaa
661 acaatgatac cacactccca acgacccata cagttgatgt ccctactagg tgaagctgca
721 ttacatggcc catcgttcta cagcaaaatc agcaaattgg tcatatcaga gttgaaagaa
781 ggtggcatgg acttttacgt gccaaggcaa gagccaatgt tccgatggat gaggttctca
841 gacttgagca cgtgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc
901 gtcgaatgac gccgctccat ctaatgatgg tgcagccggt ctcgtaccag aggtcaacaa
961 cgagacgatg gcacttgagc cggtggctgg ggcttccata gctgcccctc taaccggcca
1021 aaataatgtg atagacccct ggattagaat gaattttgtc caagctccaa atggtgaatt
1081 tacagtgtcc ccccgtaatt ccccaggtga agtgttgtta aatttggaat taggccctga
1141 attaaatcca ttcctggcac acctttcaag aatgtacaat ggttatgctg gtggggttga
1201 agtgcaggtg ctacttgctg ggaatgcgtt cacagcagga aaactagtgt ttgcagcaat
1261 ccccccacac ttccctcttg agaacctgag tcctggtcaa attacaatgt tccctcatgt
1321 aattattgat gttagaactt tagaacctgt cctcttgcct ttaccagatg ttagaaataa
1381 tttctttcat tacaatcagc agcctgagcc ccgtatgaga cttgtggcta tgttgtatac
1441 tcctcttaga tctaatggtt ctggtgatga tgtgttcaca gtctcttgta gggtcctcac
1501 tcgcccctct ccagactttg attttaatta tttggtcccc ccaactgtgg aatctaaaac
1561 caaaccattc accctgccaa tattgaccat cggagaattg tcaaattcta ggttcccagt
1621 accaatagat gaattgtaca ccagccctaa tgaaggagtg gttgtgcaac ctcaaaatgg
1681 cagatcaaca ctcgatggtg aactgcttgg caccacacaa cttgtaccat caaacatctg
1741 tgccttgcga gggcgcatca acgcccaagt gccagacgat caccatcaat ggaacttgca
1801 ggttacaaat gcaaatggaa cttcctttga tcccactgaa gatgtccctg caccattggg
1861 cacgccggat ttcctggcaa acatctacgg agtcactagt cagaggaacc ctgacaacac
1921 ttgccgtgcc catgatgggg ttttggcaac ctggagccct aaatttacac ccaagttagg
1981 atctgtagtc ttgggtactt gggaagaaag tgatcttgat ctcaatcagc ctaccagatt
2041 tacacctgtt ggtttgtatg atacaggcca ctttgatcag tgggttctac ccaactattc
2101 tggaagattg accttaaaca tgaatttggc gccctctgtt gctcccctct tcccaggtga
2161 acaaatactc ttctttaggt cccacatacc acttaaagga ggcacttcca acggtgccat
2221 tgactgtcta ctccctcagg agtggatcca gcatttctat caggagtcag ccccgtcacc
2281 cacagatgtt gccctgatta ggtacaccaa ccctgacacg ggccgtgtcc tttttgaggc
2341 caaactacat agacagggat tcatcacagt agcaaattct ggttctagac ctattgtcgt
2401 ccctcctaat ggttatttta ggtttgattc ttgggttaat cagttttatt ctcttgcccc
2461 catgggaact gggaatgggc gtagaagggt gcagtaatgg ctggagcttt tgtagcgggg
2521 cttgccggtg atatagtcac caatggcatt ggttcacttg tgaacgctgg agccaatgca
2581 ataaaccaaa aagtagattt tgaaaacaac aaacaactac agcaggcctc tttcaaccat
2641 gataaggaaa tgttgcaagc tcaaattcag gccacaaaac aattacaggc tgacatgatt
2701 gcgctcagac aaggggtatt gaccgcaggc ggcttctccc ctactgatgc agcaagaggg
2761 gcggttaatg cgcccatgac gcaagtcttg gactggaatg ggactaggta ctgggccccc
2821 ggagccacga aaacaactgc tttctccggc gggttcacaa gctctcccaa taccaggact
2881 attgatttgc ctaggaaaac atcaaccaca ccagccccca cgcctgtgtc tagacctagt
2941 tcttctgctt ctactgtttc tacccgctca acaattgtta gctggacttc tagcctttct
3001 ccttcgacta ggagctcttt taattcccag cccacctcct cttcttctcg gactagcgaa
3061 tgggtgcgta gtcaaaacag ggcgctggag ccctacatga ggggagcgtt acaaactgct
3121 tacgtgacgc ctccctctag tagagcctcc agcaatggca cagtctcaac cgtgccaaaa
3181 gaagttttgg actcctggac atctgtgttc aacacccaca gacaaccgct tttcgctcat
3241 ctccgtcgga gaggggagtc acaggtttag tgaaaagatg atctttttct tctattcttc
3301 tgaaatttct atcttgc
//