Typing tool
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Typing tool
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Complete norovirus genomes
| JN616378 | GII.1 | |
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| GII.P33 |
ORF1: 1..783
ORF2: 764..2371
ORF3: 2371..3144
LOCUS JN616378 3189 bp RNA linear VRL 25-JUL-2016
DEFINITION Norovirus Hu/GIIg-GII1/Kazincbarcika/HUN4593/2010/HUN RNA-dependent
RNA polymerase gene, partial cds; and capsid protein and minor
capsid protein genes, complete cds.
ACCESSION JN616378
VERSION JN616378.1
KEYWORDS .
SOURCE Norovirus Hu/GIIg-GII1/Kazincbarcika/HUN4593/2010/HUN
ORGANISM Norovirus Hu/GIIg-GII1/Kazincbarcika/HUN4593/2010/HUN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3189)
AUTHORS Reuter,G., Pankovics,P. and Boros,A.
TITLE Epidemic spread of recombinant norovirus GIIg/GII1 in Hungary
(2009/2010)
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3189)
AUTHORS Reuter,G.
TITLE Direct Submission
JOURNAL Submitted (24-AUG-2011) Regional Laboratory of Virology, ANTSZ
Baranya County Institute of State Public Health Sevice, Szabadsag
u. 7., Pecs, Baranya H-7623, Hungary
FEATURES Location/Qualifiers
source 1..3189
/organism="Norovirus
Hu/GIIg-GII1/Kazincbarcika/HUN4593/2010/HUN"
/mol_type="genomic RNA"
/strain="Hu/GIIg-GII1/Kazincbarcika/HUN4593/2010/HUN"
/isolation_source="fecal sample"
/host="Homo sapiens"
/db_xref="taxon:1088917"
/country="Hungary"
/collection_date="10-Sep-2010"
CDS <1..783
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AEP16504.1"
/translation="QRAVLAAALEYMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISI
TEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIK
LDPEKLTANLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSS
ILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKE
GGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 764..2371
/codon_start=1
/product="capsid protein"
/protein_id="AEP16505.1"
/translation="MKMASSDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPFLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAIPPHFPLENLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELSNSRFPVPIDELYTSPNEGVVVQPQNGRSTLDGELLGTT
QLVPSNICALRGRINAQVPDDHHQWNLQVTNANGTSFDPTEDVPAPLGTPDFLANIYG
VTSQRNPDNTCRAHDGVLATWSPKFTPKLGSVVLGTWEESDLDLNQPTRFTPVGLYDT
NHFDQWILPNYSGRLTLNMNLAPSVAPLFPGEQILFFRSHIPLKGGTSNGAIDCLLPQ
EWIQHFYQESAPSPTDVALIRYPNPDTGRVLFEAKLLRPGFITVANFGFKPIVVPPKG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 2371..3144
/codon_start=1
/product="minor capsid protein"
/protein_id="AEP16506.1"
/translation="MAGAFVAGLAGDIVTNSIGSLVNAGANAINQKVDFENNRQLQQA
SFNHDKEMLQAQIQATKQLQADMIALRQGVLTACGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGATKTTAFSGGFTSSPNTRTIDLPRKTSTTPAPTPVSRPSSSASTVSTRSTI
VSGTSGLSSSTRSSFNSQPTSSSSRTSEWVRSQNRALEPYMRGALQTAYVTPPSSRAS
SNGTVSTVPKEVLDSWTSVFNTHRQPLFAHLRRRGESQV"
ORIGIN
1 cagagagctg ttttagctgc agccctggag tacatggtaa aattttcccc agaaccacac
61 ctagctcaga ttgtcgcaga agatctccta tctcccagcg tgatggacgt gggcgatttt
121 aaaatatcaa tcactgaagg actcccctct ggggtgcctt gcacttcaca atggaactcc
181 attgctcatt ggctcctcac gctctgtgca ctctctgagg taacagattt atctcctgac
241 atcatccaag caaactcact cttctccttc tatggtgacg atgaaattgt gagcacagac
301 atcaaattag atccagaaaa gctgacagct aacctaaaag agtatggtct caagccaacc
361 cgtcctgaca agactgaagg gcctctggtc atttctgaag acttagacgg tctgaccttt
421 ttacggagaa ctgtgacccg tgacccagca ggttggtttg gaaaattgga acaaagctca
481 atacttagac agatgtattg gaccaggggc cccaatcatg aggacccctc tgaaacaatg
541 ataccacact cccaacgacc catacagttg atgtccctac taggtgaagc tgcattacat
601 ggcccatcgt tctacagcaa aatcagcaaa ttggtcatct cagagttgaa agaaggtggc
661 atggactttt acgtgccaag gcaagagcca atgttccgat ggatgaggtt ctcagacttg
721 agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag
781 tgacgccgct ccatctaatg atggtgcagc cggtctcgta ccagaggtca acaacgagac
841 gatggcactt gagccggtgg ctggggcttc catagctgcc cctctaaccg gccaaaataa
901 tgtgatagac ccctggatta gaatgaactt tgtccaagct ccaaacggtg aattcacagt
961 gtccccccgt aattccccag gtgaagtgtt gttaaatttg gaattaggcc ctgaattaaa
1021 tccattcctg gcacaccttt caagaatgta caatggttat gctggtgggg ttgaagtgca
1081 ggtgctactt gctgggaatg cgttcacagc aggaaaacta gtgtttgcag caatcccccc
1141 gcacttccct cttgagaatc tgagtcctgg tcaaattaca atgttccctc atgtgattat
1201 tgatgttaga actttagaac ctgtcctctt gcctttacca gatgttagaa ataatttctt
1261 tcattacaat cagcagcctg aaccccgtat gagacttgtg gctatgttgt atactcctct
1321 tagatctaat ggctctggtg atgatgtgtt cacagtttct tgtagggtcc tcactcgccc
1381 ctctccagat tttgatttca attatttggt ccccccaact gtggagtcta aaaccaaacc
1441 attcaccctg ccaatattga ccattggaga attgtcaaat tctaggttcc cagtaccaat
1501 agatgaattg tacaccagcc ccaatgaagg agtggttgtg caacctcaaa atggcagatc
1561 aacactcgat ggtgaactgc ttggcaccac acaacttgta ccatcaaaca tctgtgcctt
1621 gcgagggcgc atcaacgccc aagtgccaga cgatcaccat caatggaact tgcaggttac
1681 aaacgcaaat gggacttcct ttgaccccac tgaagatgtc cctgcaccat tgggcacgcc
1741 ggatttcctg gcaaacatct acggagttac tagtcagaga aaccctgaca acacttgccg
1801 tgcccatgat ggggttttgg caacctggag ccctaaattt acacccaagt taggatctgt
1861 ggttttgggt acttgggaag aaagtgatct tgatctcaat cagcctaccc gatttacacc
1921 tgttggtttg tatgatacaa accactttga tcagtggatt ctacccaact attctggaag
1981 attgacctta aacatgaatt tggcgccctc cgttgctccc ctcttcccag gtgaacaaat
2041 actcttcttt aggtcccaca taccacttaa aggaggcact tccaacggtg ccattgactg
2101 tctactccct caggaatgga tccagcattt ttatcaggag tcagccccgt cccccacaga
2161 tgtggctctg attaggtacc ccaaccctga cacgggccgt gtcctttttg aggctaaact
2221 acttaggccg ggattcatta cagtagcaaa ttttggtttt aaacctattg tggtcccccc
2281 taaggggtat tttaggtttg attcttgggt taatcaattt tattctctcg cccccatggg
2341 aactgggaat gggcgtagaa gggtgcagta atggctggag cttttgtagc agggcttgcc
2401 ggtgatatag tcaccaatag cattggttca cttgtgaacg ctggagccaa cgcaataaac
2461 caaaaagtag attttgaaaa caacagacaa ctacagcagg cctctttcaa ccatgataaa
2521 gaaatgttgc aagctcaaat tcaggccaca aaacagttac aggctgacat gattgcgctc
2581 agacaagggg tgttgaccgc atgcggcttc tcccctactg atgcagcaag aggggcagtt
2641 aatgcgccca tgacgcaagt cttggactgg aatgggacta ggtactgggc ccccggagcc
2701 acgaaaacaa ctgctttctc cggtgggttc acaagctctc ccaataccag gactattgat
2761 ttgcctagga aaacatcaac cacaccagcc cccacgcctg tatctagacc cagttcttct
2821 gcttctactg tttctacccg ctcaacaatt gttagcggga cttctggcct ttcttcttcg
2881 actaggagct cttttaattc ccagcccacc tcctcttctt ctcggactag cgaatgggtg
2941 cgtagtcaaa acagggcgct ggagccctac atgaggggag cgttacaaac tgcttacgtg
3001 acgcctccct ctagtagagc ctccagcaat ggcacagtct caaccgtgcc aaaagaagtt
3061 ttggactcct ggacatctgt gttcaacacc cacagacaac cgcttttcgc tcatctccgt
3121 cggagagggg agtcacaggt ttagtgaaaa gatgattttt cttctgttct tctgaaattt
3181 ctatctttt
//