Typing tool
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Typing tool
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Complete norovirus genomes
| JN603244 | GI.3 | |
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| GI.P13 |
ORF1: 1..804
ORF2: 788..2419
ORF3: 2419..3066
LOCUS JN603244 3066 bp RNA linear VRL 28-FEB-2012
DEFINITION Norovirus Hu/GI.3/S29/2008/Lilla Edet/Sweden RNA-dependent RNA
polymerase gene, partial cds; and capsid protein (VP1) and small
basic protein (VP2) genes, complete cds.
ACCESSION JN603244
VERSION JN603244.1
KEYWORDS .
SOURCE Norovirus Hu/GI.3/S29/2008/Lilla Edet/Sweden
ORGANISM Norovirus Hu/GI.3/S29/2008/Lilla Edet/Sweden
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3066)
AUTHORS Nenonen,N.P., Hannoun,C., Larsson,C.U. and Bergstrom,T.
TITLE Marked genomic diversity of norovirus genogroup I strains in a
waterborne outbreak
JOURNAL Appl. Environ. Microbiol. 78 (6), 1846-1852 (2012)
PUBMED 22247153
REFERENCE 2 (bases 1 to 3066)
AUTHORS Nenonen,N.P., Hannoun,C.B., Larsson,C.U. and Bergstrom,T.
TITLE Direct Submission
JOURNAL Submitted (22-AUG-2011) Infectious Diseases/Virology, University of
Gothenburg, Guldhedsgatan 10B, Gothenburg 413 46, Sweden
FEATURES Location/Qualifiers
source 1..3066
/organism="Norovirus Hu/GI.3/S29/2008/Lilla Edet/Sweden"
/mol_type="genomic RNA"
/strain="S29/2008/Lilla Edet"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:1134607"
/country="Sweden"
/collection_date="2008"
/note="genotype: GI.3"
CDS <1..804
/note="ORF1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AEY77317.1"
/translation="YTAWDSTQNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMD
VGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCALSEVTGLAPDVIQSQSYFSFYGDD
EIVSTDIEFDSNRLTQVLKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDAIGY
QGRLDRNSIERQLWWTRGPNHDDPFETLVPHTQRKVQLISLLGEAALHGEKFYRKIAS
RVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV"
gene 788..2419
/gene="VP1"
CDS 788..2419
/gene="VP1"
/note="ORF1"
/codon_start=1
/product="capsid protein"
/protein_id="AEY77318.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEVSTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMSNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVRVLLAGNAFTAGKIIISCVPPGFAAQNVSIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDSTPTMRLICMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFNFL
FLVPPNVEQKTKPFSVPNLPLNVLSNSRVPSLIKSMMVSQDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKIRGTVYHATGGQGLNLTEIDGTPYHAFESPAPIGFPDLGECDWH
INASPANAFTDGSIIHRIDVAQDSTFAPHLGTIHYTNADYNANVGLICSLEWLSPPSG
GAPKVNPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGSDGLSVPCTI
PQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQTL
PINGVFTFISWVSRFYQLKPVGTTGPVRRLGIRRS"
gene 2419..3066
/gene="VP2"
CDS 2419..3066
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="small basic protein"
/protein_id="AEY77319.1"
/translation="MAQAIFGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLGLQVGASTALLQNSLNTRYNMLTDAGLSSSDAARMVVGAPATRVVDWNG
TRISAPRSTATTLRSGGFMTIPTLYKGKQQQKAPTEIGLSNPNYGSSVSSRVADWVSS
QNSSHSSLGPYHPSALQTTWVTPPGSSSTSTISSVSTVPRYFNTDRLPLFANMRK"
ORIGIN
1 tacacagctt gggactcaac acaaaacagg gagatcatga tggagtcctt caacattatg
61 tgcaaactca ccgctaaccc ttccctagct gcagtggtgg cacaggacct gctctcccct
121 tctgaaatgg atgtcggtga ttacgtgatc agtgtcaaag acggtctgcc atctggtttt
181 ccatgcacct cacaagtaaa cagcattaac cattggatct atactttgtg tgccttatca
241 gaagttactg gcttggcccc tgatgtgata cagtcacaat cttacttttc attttatggt
301 gatgatgaga tagtttcaac agatattgaa tttgactcaa atagattaac acaagtatta
361 aaagagtatg gtttaaaacc cacaagacct gataagactg atggcccgat cattgtaagg
421 caacaggtag atggcttggt tttcctccga cgcaccatct cgaaggatgc cattgggtac
481 cagggacggc tagaccgtaa ttccattgaa agacagctct ggtggacccg tgggcccaac
541 cacgatgatc catttgaaac cttggtccca catacacaga ggaaggtcca actgatatcc
601 ttactaggtg aagctgcact ccatggtgag aaattttata gaaagatagc cagtagagtg
661 atccaggagg ttaaagaagg aggattggaa atctatattc ctgggtggca ggccatgttc
721 cgctggatgc gattccatga tttgagcttg tggacaggag accgcgatct cttgcccgat
781 tatgtaaatg atgatggcgt ctaaggacgc cccaacaaac atggatggca ccagtggtgc
841 cggtcagctg gttccagagg ttagcacagc tgaacctata tcaatggaac ctgtggctgg
901 tgctgccaca gcagcagcaa ccgcaggtca agttaatatg attgacccct ggattatgag
961 taattatgtt caagcccctc aaggagagtt cacaatttcc cctaacaata cccccggaga
1021 catattgttt gatttacaat taggccccca tttaaaccca ttcctatcac acctggccca
1081 gatgtacaat gggtgggttg gcaatatgaa agttagggtg ctgctcgctg gtaatgcatt
1141 tacagcgggc aaaataataa tcagttgtgt ccccccaggt tttgcagccc agaatgtttc
1201 aatagcccaa gctactatgt tcccccatgt tattgcagat gtgcgagtgc ttgaaccaat
1261 tgaagtccca ctagaggatg tgaggaatgt gcttttccat aataatgatt ctaccccaac
1321 tatgagattg atttgtatgt tgtatacccc tctccgtgct agtggtagtt cttctggcac
1381 tgatccattt gttatagctg gtcgggtcct cacctgtccc agtcctgact ttaacttttt
1441 gttccttgtc ccccctaatg ttgaacagaa aaccaagcca tttagtgtgc ccaatctccc
1501 ccttaatgtt ctctcaaact ctagggttcc ctctctgata aagtccatga tggtctccca
1561 agaccatgga cagatggtac aattccaaaa tggtagggtt acattagatg gacagctcca
1621 aggtaccacc cccacttcag ctagtcagct ctgcaaaatt cgagggacgg tttaccatgc
1681 aactggtggt caagggctta atttaactga aattgatggg accccctacc atgcatttga
1741 aagccctgcc ccaattggct tccccgattt aggtgagtgt gattggcaca ttaacgcatc
1801 tcctgctaat gctttcacag atggtagtat tatacataga attgatgtag ctcaggattc
1861 tacttttgcc ccccatctag gcactatcca ttatactaat gctgattata atgctaatgt
1921 tggcctgatt tgttcacttg aatggctttc cccaccaagt ggtggtgctc caaaggtaaa
1981 tccgtgggct attcctcggt atggttcaac tctgactgag gccgcccaac tggccccacc
2041 aatatacccc cccggttttg gtgaggcaat tgttttcttt atgtctgatt tccccatagc
2101 taatggttca gatggtctga gtgttccctg cactatacca caagagtttg tgacccactt
2161 tgttaatgaa caagcaccaa cccgtgggga agctgccctc cttcattatg ttgaccctga
2221 cacacaccgc aatctaggtg agtttaaact ataccctgaa ggattcatga cctgtgtacc
2281 aaattctagt ggtagtggcc cccaaacact gcccatcaat ggggtcttca ctttcatctc
2341 ttgggtttcc cgtttctatc aactaaagcc tgtgggaacg accggaccgg ttcgtaggct
2401 cggaattagg agatcataat ggcccaagca atatttggag caatagctgc gacggctgct
2461 ggcagtgctg taggtgcggg catccaggct ggtactgagg ctgcgctcca acaccagcgc
2521 ttccagcagg acttaacgtt gcagagtaac actttcaaac atgataagga aatgctaggg
2581 ttgcaggttg gtgcttctac tgccctctta caaaatagtc tcaacacccg ctataacatg
2641 ctcaccgatg ccggtctctc atcctcggat gcagctcgca tggtggttgg tgcgcctgct
2701 acgcgtgttg tagactggaa tggcaccagg atatcagcac cgcggtccac tgccaccaca
2761 ctgaggtctg gcgggttcat gacaatccca actctataca agggcaaaca acagcagaag
2821 gctccaactg aaattggcct gtctaatcca aattatgggt catctgtgtc ttcaagggtt
2881 gctgattggg tttcttctca aaattcttct cactcgtcct tgggcccata ccaccctagt
2941 gcattgcaaa caacatgggt gacaccaccc ggctcaagtt ctacttctac tatctcctct
3001 gtgtctactg tacctagata ttttaatact gataggttgc ctctattcgc aaatatgagg
3061 aaataa
//