Typing tool
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Typing tool
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Complete norovirus genomes
| JN400599 | GII.4 Hunter | |
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| GII.P4 Apeldoorn |
ORF1: 1..5100
ORF2: 5081..6703
ORF3: 6703..7509
LOCUS JN400599 7509 bp RNA linear VRL 19-DEC-2013
DEFINITION Norovirus Hu/GII-4/CGMH01/2006/TW, complete genome.
ACCESSION JN400599
VERSION JN400599.1
KEYWORDS .
SOURCE Norovirus Hu/GII-4/CGMH01/2006/TW
ORGANISM Norovirus Hu/GII-4/CGMH01/2006/TW
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7509)
AUTHORS Tsai,C.N., Lin,C.Y., Lin,C.W., Shih,K.C., Chiu,C.H. and Chen,S.Y.
TITLE Clinical relevance and genotypes of circulating noroviruses in
northern Taiwan, 2006-2011
JOURNAL J. Med. Virol. 86 (2), 335-346 (2014)
PUBMED 24009100
REFERENCE 2 (bases 1 to 7509)
AUTHORS Tsai,C.-N., Lin,C.-Y., Lin,C.-W., Shih,K.-C., Chi,H.-C.,
Chao,H.-C., Lai,M.-W., Yu,T.-H., Chen,S.-Y. and Chiu,C.-H.
TITLE Direct Submission
JOURNAL Submitted (27-JUL-2011) Graduate Institute of clinical medical
sciences, 259, Wen-Hwa 1st Rd, Kwei-Shan, Taoyuan, Taiwan
FEATURES Location/Qualifiers
source 1..7509
/organism="Norovirus Hu/GII-4/CGMH01/2006/TW"
/mol_type="genomic RNA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1195613"
/geo_loc_name="Taiwan"
/collection_date="13-Jan-2006"
/note="serogroup: GII-4"
CDS 1..5100
/note="ORF1; encodes NTPase, 3A, VPg, 3Cpro and 3Dpol"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="AFN09917.1"
/translation="MKMASNDASAAAVANSNNDTAKPSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LARVELTPLSLFWRPVYTPQYLISPDALKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEASELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNSFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTSSLIARA
SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKTM
PELKQALKNISIRKCQIVHNGCTYTLESDGKGNVKVDRVQSASVQTNNELTGALHHLR
CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGC
PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5081..6703
/gene="VP1"
CDS 5081..6703
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="major viral capsid protein"
/protein_id="AFN09918.1"
/translation="MKMASNDATPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTSRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDG
STTHQNEPQQWVLPNYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKPGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6703..7509
/gene="VP2"
CDS 6703..7509
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="minor viral capsid protein"
/protein_id="AFN09919.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAVN
APMTKALDWSGTRYWAPDARTTTYNAGRFSNPQPPGAAPGGTNLRATVPARGSSSIPS
SASIATSVHSNQTASTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSNRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc
61 gcaaaacctt caagtgacgg agtgctttct agcatggctg tcacttttaa acgagccctc
121 ggggcgcggc ctaagcagcc tcccccgagg gaaataccac aaagaccccc acgaccacct
181 actccagaac tggtcaaaaa tattcccccc cccccgccca acggagagga tgaaatagtg
241 gtttcttata gtgtcaaaga tggcgtttcc ggtttgcctg atctctccac cgtcaggcaa
301 ccggaagaat ctaacacggc cttcagtgtc cctccactca atcagaggga gaatagagat
361 gctaaggagc cactgactgg aacaattctg gaaatgtggg atggagaaat ctaccattat
421 ggcctgtatg tggagcgagg tcttgtacta ggtgtgcaca aaccaccagc tgccattagc
481 ctcgctaggg tcgaactaac accactctcc ttgttctgga gacctgtgta tactccacag
541 tacctcatct caccggatgc tctcaagaaa ttacacggag agacgttccc ctacacagcc
601 tttgacaaca attgctatgc cttttgttgc tgggtcctgg acctaaacga ctcgtggctg
661 agtaggagaa tgatccagag aacaactggc ttcttcaggc cttaccaaga ttggaatagg
721 aaacccctcc ccactatgga tgactccaag ttaaagaagg tagctaacat attcctgtgt
781 gctttgtctt cgctattcac caggcccata aaagatataa tagggaagct aaggcctctt
841 aacatactca acatcttggc ctcatgtgat tggacttttg caggcatagt ggagtccttg
901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatt
961 gcccccttac tcggtgatta cgagctacaa ggacctgagg accttgcagt ggagctcgtc
1021 cctgtagtga tggggggaat tggtttggtg ctaggattca ccaaagagaa aattggaaag
1081 atgttgtcat ctgctgcttc caccttgaga gcttgtaaag atcttggtgc atacgggcta
1141 gagatcctaa agttggtcat gaagtggttc ttcccgaaga aagaggaagc aagtgaactg
1201 gctatagtga gatccatcga ggatgcagtc ctggatctcg aggcaattga aaacaaccat
1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct acatgagaac ccttgacctt
1321 gaggaggaga aagccaggaa actctcaacc aagtctgctt cacctgacat cgtgggcaca
1381 atcaacgccc ttctggcgag aattgctgct gcacgctctc tggtgcatcg agcgaaggag
1441 gaactttcca gcagaccaag acctgtggtg ttgatgatat caggcagacc aggaataggg
1501 aagacccacc ttgctaggga agtggctaag agaatcgcag cctcccttac aggagaccag
1561 cgtgtgggcc tcgtcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg
1621 gtcgtcctat gggacgacta tggaatgagc aaccccatcc acgatgccct caggttgcaa
1681 gaactcgctg acacttgccc cctcacccta aactgtgaca ggattgagaa taaaggaaag
1741 gtctttgaca gcgatgtcat cattatcacc actaatctgg ctaacccagc accactggac
1801 tatgtcaact ttgaagcatg ttcgaggcgc atcgacttcc tcgtgtatgc agaagcccct
1861 gaggtcgaaa aggcgaaacg tgacttccca ggccaacccg acatgtggaa gaactccttc
1921 agttctgatt tctcacacat aaaactgaca ttggctccac agggtggctt cgacaagaac
1981 gggaacaccc cacacggaaa gggcgtcatg aagactctca ccactagctc ccttattgcc
2041 cgggcatcag ggctactcca tgagaggcta gatgaatttg agctgcaggg cccaactctc
2101 accaccttca actttgatcg caacaaagtg cttgccttta gacaacttgc tgctgaaaac
2161 aaatatgggt tgatggacac aatgaaagtt gggaggcagc tcaaggatgt caaaacaatg
2221 ccagagctta aacaagcact caagaatatc tcaatcagga agtgccagat agtgcataat
2281 ggttgcacct acacacttga gtctgatggc aagggcaatg tgaaagttga cagagttcaa
2341 agcgcctccg tgcagaccaa caatgagctg actggcgccc tgcaccatct aaggtgcgct
2401 agaataagat attatgtcag gtgtgtccag gaggccctgt attccatcat ccagattgct
2461 ggagccgcat ttgtcaccac gcgcatcgtc aagcgcatga acatacaaga cctatggtcc
2521 aagccacaag tggaaaacac agaggagacc accagcaagg acgggtgtcc aaaacccaaa
2581 gatgatgagg agttcgtcat ttcatccgac gacatcaaaa ctgagggtaa gaaagggaag
2641 aacaagactg gccgcggcaa gaagcacaca gccttctcaa gcaaaggtct cagtgatgaa
2701 gagtacgatg agtacaagag gattagagag gaaaggaatg gcaagtactc catagaagag
2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgccagggc gaccgaggag
2821 gacttctgtg aagaggagga ggccaagatc cggcaaagga tcttcaggcc aactaggaaa
2881 caacgcaagg aggaaagagc ttctctcggt ttagttacag gttctgaaat taggaaaaga
2941 aacccagatg atttcaaacc caaggggaaa ctgtgggctg acgatgacag aagtgtagac
3001 tataatgaga aactcagttt tgaagcccca ccaagcatct ggtcgaggat agtcaacttt
3061 ggttcaggtt ggggattctg ggtctccccc agtctgttca taacatcaac ccatgtcata
3121 ccccagggcg caaaggagtt ctttggagtc cccatcaaac aaattcaggt acataagtca
3181 ggcgaattct gtcgcttgag attcccaaaa ccaatcagaa ctgatgtgac gggcatgatc
3241 ttagaagaag gtgcacccga gggcaccgtg gtcacactac tcatcaagag atccactgga
3301 gaactcatgc ccctagcagc taggatgggg acccatgcaa ccatgaaaat ccaaggacgc
3361 actgttggag gtcaaatggg catgcttctg acaggatcca acgccaaaag catggatctg
3421 ggtactacac caggtgattg tggctgcccc tacatctaca agagaggaaa tgactatgtg
3481 gtcattggag tccacacggc tgccgctcgt gggggaaaca ctgtcatatg tgccacccag
3541 gggagtgagg gagaggccac acttgaaggt ggtgacaata aagggacata ctgtggtgca
3601 ccaatcctag gcccagggag tgctccaaaa cttagcacca agaccaaatt ctggaggtcg
3661 tccacagcat cactcccacc tggcacctat gaaccagcct atcttggtgg caaggacccc
3721 agagtcaagg gtggcccttc actgcagcaa gtcatgaggg atcagttgaa gccatttaca
3781 gagcccaggg gcaagccacc aaagccaagt gtgttggaag ctgccaagaa aaccatcatc
3841 aatgtccttg agcagacaat tgatccacct gaaaagtggt cattcgcaca agcttgcgcg
3901 tcccttgaca agaccacttc cagtggccat ccgcaccaca tgcggaaaaa cgactgctgg
3961 aacggggagt ccttcacagg caagctagca gaccaggctt ccaaggccaa cctgatgttt
4021 gaagaaggga agaacatgac cccagtctac acagctgcgc ttaaggatga attagttaag
4081 actgacaaaa tttatggtaa gatcaagaag aggcttctct ggggctcgga tttggcgacc
4141 atgattcggt gtgctcgagc attcggaggc ctaatggatg agctcaaagc gcactgtgtc
4201 acacttccca ttagagttgg tatgaatatg aatgaggatg gccccatcat cttcgagagg
4261 cattccaggt acacatacca ctatgatgct gattactctc gatgggattc aacacaacag
4321 agagccgtgt tggcagcagc tctagaaatc atggtcaaat tctccccaga accacatttg
4381 gctcaggtag tcgcagaaga cctcctttct cctagcgtgg tggacgtggg tgacttcaca
4441 atatcaatca acgagggtct tccctctggg gtgccctgca cctcccaatg gaactccatc
4501 gcccactggc ttctcactct ctgtgcgctc tccgaagtta caaacttgtc tcctgacacc
4561 atacaggcta attccctctt ctctttttat ggtgatgatg aaattgttag cacagatata
4621 aaattggacc cagagaagtt gacagcaaag ctcagggaat atgggttgaa gccaacccgc
4681 cctgataaaa ctgaaggacc ccttgtcatc tctgaagact taaatggcct gactttcctg
4741 cggagaactg ttacccgcga cccagctggc tggtttggaa aattggagca gagttcaata
4801 ctcaggcaaa tgtactggac taggggttcc aaccatgaag atccatctga aacaatgatc
4861 ccacactccc aaagacccat acaattgatg tccctactgg gggaggccgc actccacggc
4921 ccggcattct atagcaaaat cagcaagtta gtcattgcag agctaaaaga aggtggcatg
4981 gatttttacg tgcccagaca agagcctatg ttcagatgga tgagattctc agatctgagc
5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgaatga
5101 cgccacccca tctgatgggt ccacagccaa cctcgtccca gaggtcaaca atgaggttat
5161 ggctttggag cccgttgttg gtgccgcgat tgcggcacct gtagcgggcc aacaaaatgt
5221 aattgacccc tggattagaa acaattttgt acaagcccct ggtggagagt ttacagtatc
5281 ccctagaaac gctccaggtg aaatattatg gagcgcaccc ttgggccctg atttgaatcc
5341 ctacctctcc cacttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt
5401 aatcctcgcg gggaacgcgt tcaccgccgg gaaaatcata tttgcagcag tcccaccaaa
5461 tttcccaact gaaggtttga gccccagcca ggtcactatg ttcccccata taatagtaga
5521 tgttaggcaa ctggaacctg tgttgatccc cctgcctgat gttaggaata atttttatca
5581 ttacaaccaa tcaaatgacc ccaccatcaa attgatagca atgctgtata caccactcag
5641 ggctaacaat gctggggacg atgtcttcac agtctcttgt cgagttctca cgagaccatc
5701 ccctgatttt gatttcatat ttctggtgcc acccacagtt gagtcaagaa ctaaaccatt
5761 ctctgtccca atcttaactg ttgaggagat gaccaattca agattcccta ttcctctgga
5821 aaagttgttc acgggtccca gcagtgcctt tgttgttcag ccacaaaatg gcagatgcac
5881 gactgatggc gtgctcttag gtactaccca attgtctcct gtcaacatct gcaccttcag
5941 aggggatgtc acccacattg caggtactca aaattacaca atgaatctgg cctctcaaaa
6001 ttggaacaat tatgacccaa cagaagaaat cccagcccct ctgggaaccc cagattttgt
6061 aggaaagatc caaggcgtgc tcacccaaac cacaagtagg gatggctcga cccgcggtca
6121 caaagccaca gtgagcactg gaagtgtcca cttcacccca aagctgggca gtgtccagtt
6181 ctccactgat acaagcaatg attttgaaac tggccaaaac acgagattca ccccagtcgg
6241 tgttgtccag gatggtagta ccacccacca aaatgaaccc caacaatggg tgctcccaaa
6301 ctattcaggt agagatagtc acaatgtaca cctagcccct gccgtggccc ccactttccc
6361 gggtgagcaa ctccttttct ttaggtccac tatgcccggg tgcagcgggt atcccaacat
6421 gaatttggat tgcctactcc cccaggagtg ggtgcaacac ttctaccaag agtcagctcc
6481 agcacaatct gatgtggcac tgttgagatt tgtgaatcca gacacaggta gggtcttgtt
6541 tgagtgcaag cttcataaac caggctatgt aacagtggct cacactggcc aacatgattt
6601 ggttatcccc cccaatggct attttagatt tgattcctgg gtcaaccaat tctacacact
6661 tgcccccatg ggaaatggag cggggcgtag acgtgcattg taatggctgg agctttcttt
6721 gctggattgg catctgatgt ccttggttcc ggacttggct ccctaatcaa tgctggggct
6781 ggggccatca atcaaaaagt tgagtttgaa aataacagaa aattgcaaca agcttccttc
6841 cagtttagca gcaacctaca acaggcttcc tttcaacatg ataaagagat gctccaagca
6901 caaattgagg ccaccaaaaa gttgcaacag gaaatgatga aagttaaaca ggcaatgctc
6961 ctagagggtg ggttctctga gacagatgcg gcccgtgggg cagtcaacgc ccccatgaca
7021 aaggctttgg actggagcgg aacaaggtac tgggctcccg atgctaggac tacaacatac
7081 aatgcaggcc gcttttccaa ccctcaaccc ccgggggcag cgccaggggg aactaatctc
7141 agggctaccg tccccgctcg gggctcctcc agcatacctt ctagtgcttc tattgctact
7201 tctgtgcact caaatcaaac tgcttcaacg agacttggtt ctacagctgg ttctggtacc
7261 agtgtctcga gcctcccgtc aactgcaagg actaggagct gggttgagga ccaaaacagg
7321 aatttgtcac ctttcatgag gggggcccac aacatatcgt ttgtcacccc accatctaat
7381 agatcctcta gccaaggcac agtctcaacc gtgcctaaag aagttttgga ctcctggact
7441 ggcgctttca acacgcgcag gcagcctctc ttcgctcaca ttcgtaagcg aggggagtca
7501 cgtgtgtaa
//