Typing tool
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Typing tool
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Complete norovirus genomes
| HQ688986 | GII.12 | |
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| GII.P33 |
ORF1: 1..894
ORF2: 875..2482
ORF3: 2482..3261
LOCUS HQ688986 3307 bp RNA linear VRL 25-JUL-2016
DEFINITION Norovirus Hu/GII.12/Shelby/2009/USA polymerase gene, partial cds;
and major capsid protein and minor capsid protein genes, complete
cds.
ACCESSION HQ688986
VERSION HQ688986.1
KEYWORDS .
SOURCE Norovirus Hu/GII.12/Shelby/2009/USA
ORGANISM Norovirus Hu/GII.12/Shelby/2009/USA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3307)
AUTHORS Vega,E. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2010) National Calicivirus Laboratory, Centers
for Disease Control and Prevention, 1600 Clifton Rd. MS G04,
Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3307
/organism="Norovirus Hu/GII.12/Shelby/2009/USA"
/mol_type="genomic RNA"
/strain="Hu/GII.12/Shelby/2009/USA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1048785"
/geo_loc_name="USA"
/collection_date="Oct-2009"
CDS <1..894
/note="RDRP"
/codon_start=1
/product="polymerase"
/protein_id="AEI83468.1"
/translation="PVRVGMNMNEDGPIIFEKHSRYTYHYDADYSRWDSTQQRAVLAA
ALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEGLPSGVPCTSQWNSIAHWL
LTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPD
KTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPAETMI
PHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSD
LSTWEGDRNLAPNFVNEDGVE"
CDS 875..2482
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AEI83469.1"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT
QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG
VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEEDDVHINQPTKFTPVGLFES
EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHISLKGGVADPVIDCLLPQ
EWIQHLYQESAPSQTDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 2482..3261
/note="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="AEI83470.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRHWAPGAMKTTAFSGGFTSASHARTVDLTRKTSATPASMPVSRPSSTASTVSTRSTL
ISGSSNPSSLARSSSSISSQSTSSSSRTSDWVRSQNRALEPYMSGALRTAYVTPPSSR
ASSNGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRRRGESQA"
3'UTR 3262..3307
ORIGIN
1 cctgtcaggg tagggatgaa catgaatgag gatggcccca tcatttttga gaaacactct
61 agatacacct accattatga tgcagactac tctcggtggg actcaacaca gcagagagct
121 gttttagctg cagccctgga gatcatggta aaattttccc cagaaccaca cctggcccag
181 atcgttgcag aggatctcct atctcccagc gtgatggacg tgggcgattt caaaatatca
241 atcactgaag gactcccctc tggggtgcct tgcacctcac aatggaattc tattgctcat
301 tggctcctca cgctttgtgc actctctgag gtgacagatt tgtctcctga catcatccaa
361 gcaaattcac tcttctcttt ctatggtgac gatgaaattg tgagcacaga catcaaatta
421 gatccagaaa aactgacagc taaactaaaa gagtatggtc tcaagccaac ccgtcctgac
481 aagactgaag ggcctctggt catttctgag gacttagatg gtctgacctt cttacggagg
541 actgtgaccc gtgacccagc aggttggttt ggaaaattgg aacaaagctc aatacttaga
601 cagatgtatt ggaccagggg ccccaaccat gaggatcccg ctgaaacaat gataccacac
661 tcccaaagac ccatacagtt gatgtcccta ttaggtgaag ctgcattaca tggcccatca
721 ttctacagca aaatcagcaa attggtcatc tcagagttaa aagaaggtgg catggacttt
781 tacgtgccaa ggcaagagcc aatgtttcga tggatgaggt tctcagactt gagcacgtgg
841 gagggcgatc gcaatctggc tcccaatttt gtgaatgaag atggcgtcga atgacgccgc
901 tccatctaat gatggtgcag ccggtctcgt accagaggtc aacaatgaga ccatggcact
961 tgaaccggtg gctggggctt caatagccgc cccactcacc ggtcaaaata atgttataga
1021 cccctggatt agattaaact ttgtgcaagc tcccaatgga gagtttacag tttcaccccg
1081 caattcgcct ggggaagtcc tactaaactt ggaattaggt cctgaactaa atccatattt
1141 ggcacacctt tccagaatgt acaatggtta tgcaggagga gttgaggtgc aagtactact
1201 ggctgggaac gcgttcacgg ctggaaaact ggtattcgcc gcagtccccc cgcattttcc
1261 attagaaaac ataagccctg gccaaataac catgttccct catgtaatta ttgatgttag
1321 gactttagaa ccagtcctat tgcctcttcc agatgttagg aacaatttct ttcactacaa
1381 tcagcaaaac gaaccgagga tgaggcttgt ggcaatgctc tatacccccc ttaggtctaa
1441 tggttctggt gatgatgtat ttactgtctc ctgtagagtg cttactcgac cctctcctga
1501 ttttgatttc aattatttgg taccccctac agttgaatct aaaactaaac ccttcacact
1561 ccccatcttg accatagggg agttaaccaa ttccagattc cctgtgccta tagatgaact
1621 ctacactagc cccaatgaga gtttggtggt acaaccccag aacgggagat gcgcgttgga
1681 tggggagttg cagggcacta ctcagctcct ccccacggcg atctgctcgt tcaggggtcg
1741 gattaatcag aaagtgagtg gagagaacca tgtttggaat atgcaagtca ctaacattaa
1801 cggaacccct tttgatccaa cagaggatgt tccagctcct ctaggtacac cagacttttc
1861 tggcaagctc tttggcgtcc taagccagag ggaccatgat aatgcctgta ggagccatga
1921 tgcagtgatt gcaactaatt ctgctaaatt taccccaaaa ttgggcgcta tacaaattgg
1981 cacatgggaa gaagatgatg tacacatcaa ccaacccacc aaatttactc cagttggctt
2041 gtttgaaagt gaaggtttta atcagtggac actccctaat tattctggag ccttaacact
2101 caacatgggg ttggcccccc ctgtggcccc cacatttcct ggtgagcaaa ttcttttctt
2161 cagatcccac atttctctta aaggaggtgt ggcagaccca gttattgatt gtctcttgcc
2221 ccaagagtgg atccaacacc tttatcagga gtcagcccct tcacaaacag atgtagcact
2281 gatcagattc acaaacccag acacagggcg tgtcctattt gaagcaaaat tgcacaggag
2341 tggctacatc acagtggcca acactggtag cagaccaatt gtggtgccag ctaatggtta
2401 cttcaggttt gactcttggg ttaatcagtt ttattctctc gcccccatgg gaactgggaa
2461 tgggcgcaga agggtgcagt aatggctgga gctttcatag caggtcttgc tggtgatata
2521 gtcaccaatg gtattggctc actcgtgaac gctggggcca atgcaataaa ccaaaaagta
2581 gactttgaaa acaataagca actacagcag gcatctttca atcatgacaa agagatgctg
2641 caagctcaaa ttcaagccac caaacagcta caggctgata tgattgcaat cagacaaggg
2701 gtgttgaccg cgggcggctt ctcccccact gatgcagcaa gaggtgcagt caacgcaccc
2761 atgacacagg tcttggactg gaacgggact agacattggg cccccggagc catgaaaaca
2821 actgctttct ccggtgggtt caccagtgct tctcatgcca ggaccgttga cctgactagg
2881 aaaacatcag ccacaccagc ctctatgcct gtctctaggc ccagttctac tgcctctact
2941 gtttccaccc gttctacctt gattagtgga tcctctaatc cttcttctct agctaggagt
3001 tcttccagta tttcttccca atctacttcc tcatcctctc ggactagtga ttgggtacgt
3061 agccaaaaca gagcactgga gccttatatg agcggggcgc tgcgtacagc ctacgtgaca
3121 cctccatcca gtagggcttc tagcaatggc acagtctcaa ccgtgccaaa agaggttttg
3181 gactcctgga catctgcatt caacacacac agacaaccgc tgtttgctca tctccgtcgg
3241 agaggggagt cacaagctta gtgaaaagat ggtcttttct ttcattcctt tgaaatctct
3301 gtctttc
//