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Typing tool
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Complete norovirus genomes
HQ664990 | GII.12 | ![]() |
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GII.P33 |
ORF1: 5..5110 ORF2: 5091..6698 ORF3: 6698..7477LOCUS HQ664990 7523 bp RNA linear VRL 06-SEP-2011 DEFINITION Norovirus Hu/GII.12/HS206/2010/USA, complete genome. ACCESSION HQ664990 VERSION HQ664990.1 KEYWORDS . SOURCE Norovirus Hu/GII.12/HS206/2010/USA ORGANISM Norovirus Hu/GII.12/HS206/2010/USA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7523) AUTHORS Takanashi,S., Wang,Q., Chen,N., Shen,Q., Jung,K., Zhang,Z., Yokoyama,M., Lindesmith,L.C., Baric,R.S. and Saif,L.J. TITLE Characterization of Emerging GII.g/GII.12 Noroviruses from a Gastroenteritis Outbreak in the United States in 2010 JOURNAL J. Clin. Microbiol. 49 (9), 3234-3244 (2011) PUBMED 21752978 REFERENCE 2 (bases 1 to 7523) AUTHORS Chen,N., Takanashi,S., Wang,Q. and Saif,L.J. TITLE Direct Submission JOURNAL Submitted (30-NOV-2010) Food Animal Health Research Program, The Ohio State University, 1680 Madison Ave, Wooster, OH 44691, USA FEATURES Location/Qualifiers source 1..7523 /organism="Norovirus Hu/GII.12/HS206/2010/USA" /mol_type="genomic RNA" /strain="Hu/GII.12/HS206/2010/USA" /host="Homo sapiens" /db_xref="taxon:1046049" /geo_loc_name="USA" /collection_date="2010" 5'UTR 1..4 CDS 5..5110 /codon_start=1 /product="nonstructural polyprotein" /protein_id="AEI29585.1" /translation="MKMASNDASAAAAAISNNDIAKSSSDGVLSSMAVTFKRALGARP KQPPPRETTQKQKPPRPPTPELIKKIPPPPPNGEDDVVVSYSAKEGVSGLPELSTVRQ PDVTNTAFSVPPLNQRENRDAKEPLPGTILEMWDGEFYHYGLYVERGLVLGVHKPPAA ISFAKVELTPLSLYWRPVYTPQYLISPETLKKLHGETFPYTAFDNNCYAFCCWVLDLN DSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDII GKLRPLNILNILASCDWTFAGVVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF FPKKDEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDLEEEKARKL STKSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAR DLAKKVAATLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELAD TCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDV EKAKRDFPGQPDMWKDAFKPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTSGSLVA RASGLLHERLDEYELQGPTPTTFNFDQNKVFAFRQLAAENKYGLMDTMRVGSQLKNVK TVSELKQALKNIAIRRCQIVYSGLTYSLESDGKGNVRVEKVQSPAVQTNNELTGALHH LRCARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSRPQVEDEEETTSKD GCPKPKDEEEFVISSEDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREER NGKYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLG LVTGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWV SPSLFVTSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAP EGTVATLLIKRPTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTP GDCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAVLEGGDNKGTYCGAPI LGPGNAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFT EPRGKPPKPSVLEAAKKTIINVLEQTIDPPQKWTFAQACASLDKTTSSGYPHHVRKNE HWNGESFTGKLADQASKANLMFEEGKHMTPVYTGALKDELVKTDKVYGKIKKRLLWGS DLATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYTYHYDADYSR WDSTQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEGLPSGVP CTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAK LKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTR GPNHEDPAETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPR QEPMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE" CDS 5091..6698 /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="AEI29586.1" /translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT QLLPTAICSFRGRINQKVSGENHVWNMQVTNIDGTPFDPTEDVPAPLGTPDFSGKLFG VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEQDDVHINQPTKFTPVGLFES EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ EWIQHLYQESAPSQTDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRVQ" CDS 6698..7477 /note="minor capsid protein" /codon_start=1 /product="VP2" /protein_id="AEI29587.1" /translation="MAGAFIAGLAGDIVTNGIGSIVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQAQIQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRHWAPGAMKTTAFSGGFTSASHARTVDLTRKTSATPASMPVSRPSSTASTVSTRSTL ISGSSNPSSLARSSSSISSQSTSPSSRTSDWVRSQNRALEPYMSGALRTAYVTPPSSR ASSNGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRRRGESQV" 3'UTR 7478..7523 ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctatca gcaacaacga 61 catcgcaaaa tcttcaagtg acggagtact aagtagtatg gctgtcactt ttaaacgagc 121 cctcggggcc cggcctaaac agccgccccc gagggaaaca acacaaaaac aaaaacctcc 181 acgaccgccc accccggaat taatcaaaaa gattccacct cccccgccca acggggaaga 241 cgatgtagtg gtgtcctaca gtgccaaaga gggggtctcc ggcctgcctg agctatccac 301 cgtcaggcag ccggatgtga caaacacagc atttagtgtc cccccactca accagaggga 361 aaatagggat gctaaagaac cgctgcctgg caccatattg gaaatgtggg acggagagtt 421 ctaccactac ggcttgtacg tggagcgggg tttggtgctt ggggtgcaca aaccaccagc 481 ggctattagc ttcgcaaagg ttgaactaac accactgtct ctgtactgga gaccagtgta 541 cacccctcag tacctcatat ccccggaaac actcaaaaag ctacatggtg agacattccc 601 ttacacggca tttgataaca actgttacgc cttctgttgt tgggtcttgg atctaaacga 661 ctcttggctc agcaggagga tgattcagag aacaactggc ttcttcagac cctaccagga 721 ctggaacagg aaacctctcc ccactatgga tgattccaaa ttgaaaaagg tggctaatat 781 agtcctgtgt gctttgtcat cactattcac caggcccatt aaggacataa taggaaaact 841 aaggccctta aacatactca acatactagc ttcctgcgac tggactttcg caggagtagt 901 ggaatcccta attctccttg cagaactctt cggagttttc tggacacccc cagatgtgtc 961 tgcgatgatc gcccccttac taggtgacta cgaactacag ggacctgaag atctcgctgt 1021 agaactcgta ccagtagtaa tgggggggat aggtttggtt ctaggtttca ccaaggagaa 1081 gattggcaag atgctgtcat ccgccgcgtc caccctcaga gcttgtaaag accttggagc 1141 atatgggtta gaaatcctga agttggtcat gaaatggttc ttcccgaaga aagacgaggc 1201 aaatgaactt gcaatggtga gatccattga ggatgcagtg ctggaccttg aagcaattga 1261 aaacaatcac atgaccaccc tgctcaaaga caaagacagt ttggcaacct acatgaagac 1321 tctggatctt gaagaggaga aagctaggaa actctccacc aaatccgctt ctcctgatat 1381 tgtgggcaca atcaattcac tcctggcacg gattgcagct gcccgttccc tggtgcaccg 1441 ggcaaaagaa gagctttcca gtaggccaag acccgttgtt gttatgatat caggaaagcc 1501 aggaataggg aaaacccatc ttgccagaga tttggcaaag aaagttgcag ccacccttac 1561 aggagaccag agggtgggcc tcatcccacg gaatggtgtc gaccattggg atgcatacaa 1621 aggtgagaga gtcgtccttt gggatgacta tggaatgagt aaccccattc atgacgccct 1681 taggctacaa gaacttgctg acacttgccc cctaacatta aattgtgata gaattgagaa 1741 caaaggaaag gtttttgaca gtgatgccat aattattaca actaacttgg ctaatccggc 1801 accactggac tatgtcaact ttgaagcatg ttcgaggcgt atcgacttcc ttgtgtacgc 1861 tgatgccccc gacgttgaaa aggcaaaacg cgacttccca gggcaacctg acatgtggaa 1921 ggatgctttt aaacctgact tctcacacat aaagttaatg ttggctcctc agggtggttt 1981 tgataagaac ggcaacaccc cacatggaaa aggtgtcatg aaaaccctca catctggctc 2041 cctcgtagcc cgcgcttcag gactcctcca cgaaagactg gacgagtacg agttgcaagg 2101 gccaacaccc acaaccttca atttcgacca aaacaaggtg ttcgccttta ggcagctcgc 2161 cgctgaaaat aaatacgggc tgatggacac catgagagtg ggaagccagc tcaagaatgt 2221 caaaactgtg tcagagctca aacaggcact caagaacatt gcaattagaa ggtgccagat 2281 agtctacagt ggtctcacat actcacttga atctgatggc aaaggtaatg taagggttga 2341 gaaggtgcaa agtccagctg tgcagaccaa caatgagcta actggcgcac tacaccatct 2401 gaggtgcgct aggattagat attatgttaa gtgtgttcag gaagctttgt attccatcat 2461 ccaaattgct ggggccgcgt ttgtcaccac gcgcattgca aagcgcatga acatacaaaa 2521 cctctggtcc agaccacagg tggaggacga ggaagagacc accagcaaag acgggtgccc 2581 aaaaccaaag gatgaggagg agtttgtcat ctcgtctgaa gacatcaaag tcgaaggcaa 2641 gaagggaaag aacaagtctg gccgcggcaa gaaacacaca gccttttcga gtaaaggtct 2701 tagtgatgag gagtacgatg agtataaaag aattagagaa gaaagaaatg gtaagtactc 2761 catagaagaa tacctccagg acagagacaa gtactatgag gaggtggcca tagccagggc 2821 tactgaagag gacttctgtg aggaagaaga agccaagatt cgtcagagga ttttcagacc 2881 aacaaggaaa caacgcaagg aggagagggc ttcactcgga ctggttacag gctcagaaat 2941 caggaaaagg aacccggatg acttcaaacc caaaggaaaa ctgtgggctg atgatgacag 3001 gagtgtcgat tacaatgaaa agctcagttt tgaggccccc ccaagcatct ggtcgagaat 3061 agtcaacttt ggatcaggtt ggggcttctg ggtctcacca agcctttttg taacatccac 3121 ccatgtcata cctcaagggg cacaagaatt tttcggtgtt tccatcaaac agatccaaat 3181 tcacaagtcg ggcgaattct gccgactaag attcccaaaa ccaattagaa ctgatgtgac 3241 aggtatgatc ttggaggagg gggcccctga agggactgtg gccacactgc tcataaagag 3301 gccaactgga gagctgatgc cactggcagc tagaatgggc acccatgcaa ctatgaggat 3361 ccagggtcga actgtcgggg ggcagatggg gatgctcctg acgggatcca acgccaagag 3421 catggatttg ggtaccacac caggtgactg tggatgccca tacatataca aaagaggaaa 3481 tgactacgta gtcatcgggg tccacacagc tgccgcccgc ggagggaaca ctgtcatctg 3541 tgcaacacaa ggaagtgagg gcgaggctgt gcttgaaggt ggcgacaaca aaggcaccta 3601 ttgtggcgcc ccaatcctag gtccaggaaa tgcccccaaa ctcagtacta aaaccaaatt 3661 ctggaggtcc tcaacagcac cactcccacc tggcacatat gaaccagctt acctcggagg 3721 caaagacccc agagtaaaag gtggcccctc attacagcaa gttatgagag accaactgaa 3781 accatttaca gaacccagag gtaagccacc aaagcccagt gtactagaag cagccaaaaa 3841 gacaatcatt aatgtccttg agcaaacaat agacccaccc caaaaatgga cgttcgcaca 3901 ggcgtgcgca tccctcgaca aaacaacctc tagtggctac ccgcaccacg tgcggaagaa 3961 tgaacattgg aatggggaat ctttcacagg aaaattggct gatcaggctt caaaagctaa 4021 cctgatgttt gaggaaggta aacacatgac accagtctac acaggagccc tcaaggatga 4081 gttagtcaaa actgataaag tatatggcaa gatcaagaag aggttgctat ggggttcaga 4141 tctggcaacc atgatccgct gcgctcgagc gttcggaggg ttgatggatg aactcaaggc 4201 tcactgtgtc acactcccca ttagggtagg gatgaacatg aatgaggatg gtcccatcat 4261 ttttgagaaa cactctagat acacctacca ttatgatgca gactactctc ggtgggactc 4321 aacacagcag agagctgttt tagctgcagc cctggagatc atggtgaaat tttccccaga 4381 accacacctg gcccagatcg ttgcagagga tctcctatct cccagcgtga tggacgtggg 4441 cgatttcaaa atatcaatca ctgaaggact cccctctggg gtgccttgca cctcacaatg 4501 gaattctatt gctcattggc tcctcacgct ttgcgcgctc tctgaggtaa cagatttgtc 4561 tcctgacatc atccaagcaa actcactctt ctctttctat ggtgacgatg aaattgtgag 4621 cacagacatc aaattagatc cagaaaagct gacagctaaa ctaaaagagt atggtctcaa 4681 gccaacccgt cctgacaaga ctgaagggcc tctggtcatt tctgaggact tagatggtct 4741 gaccttctta cggaggactg tgacccgtga cccagcaggt tggtttggaa aattggaaca 4801 aagctcaata cttagacaga tgtattggac caggggcccc aaccatgagg atcccgctga 4861 aacaatgata ccacactccc aaagacccat acagttgatg tccctattag gtgaagctgc 4921 gttacatggc ccatcattct acagcaaaat cagcaaattg gtcatctcag agttgaaaga 4981 aggcggcatg gacttttacg tgccaaggca agagccaatg tttcgatgga tgaggttctc 5041 agacttgagc acgtgggagg gcgatcgcaa tctggctccc aattttgtga atgaagatgg 5101 cgtcgaatga cgccgctcca tctaatgatg gtgcagccgg tctcgtacca gaggtcaaca 5161 atgagaccat ggcacttgaa ccggtggctg gggcttcaat agccgcccca ctcaccggcc 5221 aaaacaatgt tatagacccc tggattagat taaactttgt gcaggccccc aatggagagt 5281 ttacagtctc accccgcaat tcgcctgggg aagttctact aaacttggaa ttaggccctg 5341 aactaaatcc atatttggca cacctttcca gaatgtacaa tggttatgca ggtggagttg 5401 aggtgcaagt actactggct gggaacgcgt tcacggctgg aaaactggta ttcgctgcag 5461 ttccccctca ttttccatta gaaaacataa gccctggcca aataaccatg ttccctcatg 5521 taattattga tgttaggact ttagaaccag tcctattgcc tcttccagat gttaggaaca 5581 acttctttca ctacaatcag caaaacgaac cgaggatgag gcttgtggca atgctctata 5641 ccccccttag atctaatggt tctggtgatg atgtatttac tgtctcctgt agagtgctta 5701 ctcgaccctc tcctgatttt gatttcaatt atttggtacc ccctacagtt gaatctaaaa 5761 ctaagccttt cacactccct atcttgacca taggggagtt aaccaattcc agattccctg 5821 tgcctataga tgaactctac actagcccca atgagagttt ggtggtacaa ccccagaacg 5881 ggagatgcgc gctggatggg gagttgcagg gtactactca gctcctcccc acggcgatct 5941 gctcgttcag gggtcggatt aatcagaaag tgagtggaga gaaccatgtt tggaatatgc 6001 aagtcaccaa cattgacgga accccttttg atccaacaga ggatgttcca gctcctctag 6061 gtacaccaga cttttctggc aagctctttg gcgtcctaag ccagagggac catgacaatg 6121 cctgtaggag ccatgatgca gtgattgcaa ctaattctgc taaatttacc ccaaaattgg 6181 gcgctataca aattggcaca tgggaacaag atgatgtaca catcaaccaa cccaccaaat 6241 ttactccagt tggcttgttt gaaagtgaag gttttaatca gtggacactc cctaattact 6301 ctggagcctt aacactcaac atggggttgg ccccccctgt ggcccccaca tttcctggcg 6361 agcaaattct tttcttcaga tcccacattc ctcttaaagg aggtgtggca gacccagtta 6421 ttgattgtct cttgccccaa gagtggatcc aacaccttta tcaggagtca gccccttcac 6481 aaacagatgt agcactgatc agattcacaa atccagacac agggcgtgtc ctatttgaag 6541 caaaattgca taggagtggc tacatcacag tggccaacac tggtagcaga ccaattgtgg 6601 tgccagctaa tggttacttc aggtttgact cttgggttaa tcagttttat tctctcgccc 6661 ccatgggaac tgggaatggg cgcagaaggg tgcagtaatg gctggagctt tcatagcagg 6721 tcttgctggt gatatagtca ccaatggtat tggctcaatc gtgaacgccg gggccaatgc 6781 aataaaccaa aaagtagact ttgaaaacaa taagcaacta cagcaggcat ccttcaatca 6841 tgacaaagag atgctgcaag ctcaaattca agccaccaaa cagctacagg ctgatatgat 6901 tgcaatcaga caaggggtgt tgaccgcggg cggcttctcc cccactgatg cagcaagagg 6961 tgcagtcaac gcacccatga cacaggtctt ggactggaac gggactagac attgggcccc 7021 cggagccatg aaaacaactg ctttctccgg tgggttcacc agtgcttctc atgccaggac 7081 cgttgacctg actagaaaaa catcagccac accagcctct atgcctgtct ctaggcccag 7141 ttctactgcc tctactgttt ctacccgttc taccttgatt agtggatcct ctaatccttc 7201 ttctctagct aggagttctt ccagtatttc ttcccaatcc acttccccat cctctcggac 7261 tagtgattgg gtacgcagcc aaaacagagc actggagcct tacatgagcg gggcgctgcg 7321 tacagcctac gtgacacctc catccagtag ggcttctagc aatggcacag tctcaaccgt 7381 gccaaaagag gttttggact cctggacatc tgcattcaac acacacagac aaccgctgtt 7441 tgctcatctc cgtcggagag gggagtcaca agtttagtga aaagatggtc ttttctttca 7501 ttcctttgaa atctctgtct ttt //