Typing tool
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Typing tool
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Complete norovirus genomes
| HQ637267 | GI.9 | |
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| GI.P9 |
ORF1: 1..822
ORF2: 806..2458
ORF3: 2458..3105
LOCUS HQ637267 3177 bp RNA linear VRL 25-JUL-2016
DEFINITION Norovirus Hu/GI/Vancouver730/2004/CAN polymerase gene, partial cds;
and VP1 and VP2 genes, complete cds.
ACCESSION HQ637267
VERSION HQ637267.1
KEYWORDS .
SOURCE Norovirus Hu/GI/Vancouver730/2004/CAN
ORGANISM Norovirus Hu/GI/Vancouver730/2004/CAN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3177)
AUTHORS Gregoricus,N., Mattison,K., Isaac-Renton,J. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (19-NOV-2010) National Calicivirus Laboratory, Centers
for Disease Control and Prevention, 1600 Clifton Road, MS-G04,
Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3177
/organism="Norovirus Hu/GI/Vancouver730/2004/CAN"
/mol_type="genomic RNA"
/strain="Hu/GI/Vancouver730/2004/CAN"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:999890"
/geo_loc_name="Canada"
/collection_date="Aug-2004"
CDS <1..822
/note="RDRP"
/codon_start=1
/product="polymerase"
/protein_id="AEA02123.1"
/translation="YHYDADYTAWDSTQNREIMLESFNIMCKLTANPSLAAVVAQDLL
SPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCALSEVTGLAPDVLQSQSYF
SFYGDDEIVSTDVEFDPVKLTQVLKEYGLKPTRPDKSEGPIIVKQCVDGLVFLRRTIS
RDAAGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPHQQRKIQLISLLGEAALHGEKF
YRKIANRVIQEVKEGGLELYVPGWQPMFRWMRFHDLSLWAGDRNLLPDYVNDDGV"
CDS 806..2458
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="AEA02124.1"
/translation="MMMASKDATSNMDGTSGAGQLVPENNNTSEPINMEPVAGAVTAA
ATAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYN
GWVGNMKVRVVLAGNAFSAGKIIVCCIPPGFSAPNISIAQATMFPHVIADVRVLEPID
IPLDDVRNVLFHTNDNGNQTMRLLCMLYTPLRSGGTSSGTDPFVIAGRVLTCPTPDFN
FLFLVPPTVEQKTKQFSVPNLPLNVMSNSRVPSLLNAMVVSPDQAQVVQFQNGRCTLD
GQMLGTTTVSASCVARFRGKTFQAPDNRLGINLAEISGEPYHAFESPAPLGFPDFGDG
DWHVTATKVTPSQLEANDPVVVGNVQPYNPQFAPHLGTLVVENPTPDQVATGTDLLFN
ITWLSNRANNRFNPWVIPNYGSTLTEAAQLAPSIFPPGFGETIVYFNSTFPAVGATTH
AAIPCLLPQEFVAHFVNEQAPIRGEAALLHYIDPDTHRNLGEFKIYPEGFVTCVPNVG
GTGPQSLPTNGVFVFVSWVSRYYQLKPVGTAGQARRLGFRRV"
CDS 2458..3105
/note="minor capsid protein"
/codon_start=1
/product="VP2"
/protein_id="AEA02125.1"
/translation="MAQAIFGAIAATAAGSAVSAGIDAGTQAALQYQRYQQDLDLQSK
SFLHDERMLGLQVDASNALLQKNLSTRYNLLLSSGMSSSDAARMIAGAPPTKIVDWNG
VRVAAPRSSATTLRSGGFMPIAPLSITPKMKNDGAGIVNPNYAPSHSSMVTRTTQWVE
SQNSLRSLEPFHQGALQTAWVTPPGSSSTSTVSSVSTAPRYFNTERLPLFANLRK"
3'UTR 3106..3177
ORIGIN
1 taccattatg atgctgatta cacagcttgg gactccaccc agaacagaga aatcatgtta
61 gaatccttca acatcatgtg caaattgaca gccaacccat cacttgctgc cgttgtggca
121 caggatttat tatccccatc agaaatggac gttggagact atgtgattag tgtcaaggat
181 ggtctacctt caggattccc gtgcacctcg caagtaaaca gcataaacca ctggatctac
241 actctatgtg ccctttcaga agtaactggt ctggcacctg atgtcctgca gtctcaatca
301 tatttctctt tttatggaga tgatgaaatt gtttcaactg atgtggaatt tgaccctgta
361 aaactcaccc aggtacttaa agaatatggc ttaaaaccca cccgccctga caaatcagaa
421 ggacctatca tagtaaagca atgtgtggat ggtctagttt tcctaaggcg caccatatcg
481 agggacgctg cagggtacca agggcgacta gatcgtaact ccatagaaag acaactctgg
541 tggacccggg gcccaaatca tgatgatcca tttgaaactt tggtgcccca tcagcaaagg
601 aaaatacaat tgatttcctt acttggggag gctgcacttc acggagaaaa attctacaga
661 aagattgcca acagagtgat tcaggaagtc aaggaagggg gccttgagct ctatgtgccc
721 ggctggcagc ccatgtttcg ctggatgcgg ttccatgatc tgagcttgtg ggcaggagat
781 cgcaatctcc tccccgatta tgtaaatgat gatggcgtct aaggacgcta cctcaaacat
841 ggatggcacc agcggagctg gacaactggt gccagagaat aacaacacct cagaaccaat
901 caatatggaa ccagtcgcgg gcgcggtcac tgccgcagct acggctggcc aggtgaatat
961 gattgatcct tggataatga ataattatgt gcaagccccc cagggtgagt tcacaatctc
1021 acccaataac acccctggtg atatattgtt tgatcttcaa ttgggtcccc atcttaaccc
1081 ctttcttgct catttatccc aaatgtataa tggatgggtt ggtaacatga aagtcagagt
1141 ggtgctggct ggcaatgcct tctctgcggg aaagattata gtgtgctgta taccacctgg
1201 attttctgca ccaaacatat ctatagccca ggcaactatg ttcccacatg ttattgctga
1261 tgttcgggtc ttggagccca ttgatatccc ccttgatgat gtcaggaatg ttttgtttca
1321 tactaatgat aatggtaatc agaccatgag attgttgtgc atgttataca caccacttcg
1381 tagtgggggt acatccagtg ggactgaccc atttgtaatt gctggtaggg tcctaacctg
1441 tcctactcca gattttaatt ttctgttttt agttccccca accgttgagc agaagaccaa
1501 acagtttagt gtaccgaacc tccccctcaa tgttatgtct aactctagag ttccatcact
1561 gctgaatgcc atggttgtgt caccagatca ggcccaagtg gtgcaatttc agaatggtag
1621 gtgcaccctt gatgggcaaa tgttaggcac cactactgta tcagctagtt gtgttgcaag
1681 attcagaggg aaaacttttc aagcccctga caacaggtta ggtattaatc tggctgaaat
1741 tagtggagaa ccatatcatg cattcgaaag ccccgccccc ctaggtttcc ccgattttgg
1801 ggatggagat tggcatgtca ctgcaacaaa agtaaccccc tcacagcttg aagctaatga
1861 tcctgtggtc gtggggaatg tccaaccata caatccacag tttgcccctc acctgggcac
1921 cctagttgta gaaaacccca ccccagacca agtggccacc gggactgatc tattattcaa
1981 cataacctgg ctttccaatc gtgccaacaa tcggtttaac ccttgggtca ttccaaatta
2041 tggttcaact ctcacggagg cggcacagct ggcaccttca atatttcccc ccggctttgg
2101 tgaaactata gtgtatttta attccacttt tccagcagtg ggtgccacca cccatgcagc
2161 tataccctgt ttgcttccac aagaatttgt tgctcatttt gttaatgagc aggcccccat
2221 acgtggagag gctgctctgc tccactatat tgaccctgac actcaccgta atcttggtga
2281 gttcaaaatt tatcctgagg gctttgtgac gtgtgtccct aatgtgggtg gcacagggcc
2341 acaatctcta cctactaatg gtgtctttgt ctttgtttct tgggtgtcaa ggtattatca
2401 actcaagcct gtgggaactg ctggtcaagc aagacggctt ggtttcagga gagtataatg
2461 gctcaagcaa tattcggagc tattgcagct acagctgcgg gtagtgctgt cagtgctggc
2521 attgacgccg gtacacaggc tgcactacaa taccagcgct atcaacagga ccttgacctc
2581 caatctaaat ctttcctcca tgatgagcgt atgcttggct tgcaagtaga tgctagcaat
2641 gctttgttgc aaaagaatct gtctactaga tataatttat tgctttcttc tggtatgtcc
2701 tcttctgatg ctgctcgcat gattgctggc gcaccaccaa caaaaatagt tgattggaat
2761 ggagttaggg tggcagctcc aagatcctca gcaacaactc tacgttctgg gggctttatg
2821 ccaattgctc cactgtccat aactccaaaa atgaagaatg atggtgcagg tatagtaaac
2881 cccaattatg cacctagtca cagttcaatg gttactcgaa ccacacaatg ggtcgaaagt
2941 cagaactccc taagaagttt agaaccattc caccaaggcg ccctgcagac cgcatgggtg
3001 accccaccag gttcttcttc cacctccaca gtgtctagtg tgtcaactgc accaagatat
3061 tttaatacag agagacttcc tctattcgca aatttgagga aatgattttt gtaatatgaa
3121 ttagtgggca tcatattcaa tttggttcaa tttggatttt aattagtttg tgatgtt
//