Typing tool
|
Complete norovirus genomes
HQ392821 | GII.11 | ||
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GII.P11 |
ORF1: 6..5087 ORF2: 5071..6714 ORF3: 6714..7475LOCUS HQ392821 7548 bp RNA linear VRL 01-JUN-2012 DEFINITION Norovirus pig/GII/Ch6/China/2009, complete genome. ACCESSION HQ392821 VERSION HQ392821.1 KEYWORDS . SOURCE Norovirus pig/GII/Ch6/China/2009 ORGANISM Norovirus pig/GII/Ch6/China/2009 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7548) AUTHORS Shen,Q., Zhang,W., Yang,S., Cui,L. and Hua,X. TITLE Complete genome sequence of a new-genotype porcine norovirus isolated from piglets with diarrhea JOURNAL J. Virol. 86 (12), 7015-7016 (2012) PUBMED 22628399 REFERENCE 2 (bases 1 to 7548) AUTHORS Shen,Q., Zhang,W. and Hua,X. TITLE Recombinant Porcine Norovirus Isolated from China That Contributed to a Sporadic Cases of Gastroenteritis in Piglet JOURNAL Unpublished REFERENCE 3 (bases 1 to 7548) AUTHORS Shen,Q., Zhang,W. and Hua,X. TITLE Direct Submission JOURNAL Submitted (08-OCT-2010) School of Agriculture and Biology, Shanghai JiaoTong University, 800 Dongchuan Road, Shanghai 200240, P.R. China FEATURES Location/Qualifiers source 1..7548 /organism="Norovirus pig/GII/Ch6/China/2009" /mol_type="genomic RNA" /isolation_source="fecal sample" /host="swine" /db_xref="taxon:1088689" /country="China" /collection_date="Aug-2009" /note="group: GII" 5'UTR 1..5 CDS 6..5087 /codon_start=1 /product="polyprotein" /protein_id="AEP04092.1" /translation="MKMASNDATTASCGENTTKKDSDKPFWSFSSKGDFFSNVKVGFK KKTTKTPPEEPFIPPDDRGGAEQVQPLEEPADTTLRYNARDNTIEGLPELDYVEMDET KDTAYAVPPLNLREHQPAPEPLPGAIIEMWDGEIYHYGIYAGGGKVLGVHKPAAAICL ATIELTPISLYWRVVYTPQNSIPIDSLRRLAGERFPYTAFDNNCYTFCCWVLDLNDSW LSRRMVTRTTGFFRPYQDWNTKPVPTVDDSKLKKVANVILCGLTSLFSRPIKDIVGKL KPLNLINILATCDWTFGGIVESLVLVGELFGIFWTPPDVTSFLASILDDFQLQGPEDL AAEVVPVLMGGLGLVLGFTTEKIGRMLSSAASTLRACKDLGAYGLDILKLVVKWFFPK KEEQAELEMVRSIEDAVLDLEALENNHLTTLLKDKDSLTAFMKTLDMEEEKARKLSTR SSSPDIVGTINALLARISAARSLLHKAREELCARIRPVVVMISGRPGIGKTHMARHLA QKVAAAIGGDKRIGLVPRNGVDHWDAYKGERIVLWDDYGMSNPIKDALTLQELADTCP VTLNCDRIENKGKLFDSDIIVITTNLTSPAPLDYVNFEACSRRVDFLVYAESPDVEKV KKEFPGQPDMWKDAYQQDHSHIKLQLAPQGGFDKNGNTPYGKGVMKTLTQNSLVARVA ALVHERADEFALRGDDLPLYNFDVDKINSFRKMAADNRYGFFETMKVGAALKNVDSME GLKTALKGVTLKPCKVVYKGTIYQIESGRGGLAVKKLEDRYAQSSGSLFGVLTRVRQA RAKYYLKCFQELIYTTLQIAGAAFVTSRIVRRSNWCNSWRQAAEPGTLAPAEEPLPAQ PQDWEVTPVAADQEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEYKRIREEREGKYSIE EYLRDRDRYYEELAIAQATEENFAEDDEMRLRQRIFRPTKKQRREERATLGLVSGTEI RKRKADDFQPKGKLWADDSREVDYNETINFEAPSSIWSRVVPFGTGWAFWVSPSLLIT TTHVVPKDTTEIFGVPIAQIQVHKSGEFCRLRFPRPMRTDVNGLILEEGAPEGTVCTI LIKRSSGELLPLAVRMGTHATMKIQGRTIGGQMGMLLTGANAKNMDLGTSPGDCGCPY IYKRGNDFVVAGVHTAAARGGNTVVCATQGPDGEATLEGGENHGTYCGAPILGPGKSP KLSTKTKFWRSSTAPLPPGTYEPAYLGGRDPRVENGPSLQQVMRDQLKPFTAPRGKPP KPSVLDSAKDTIVNFLEQTLEPAKKWSYSQACQSLDKTTSSGDPHHVRKNDHWNGETF TGPLADQASKANLLYEQGKHVQPVYTAALKDELVKTEKIYGTVKKRLLWGSDLGTMIR CARAFGGLMEEMKENCILLPIRVGMNMNEDGPAIFERHARHTYHFDADYSRWDSTQQR GILAAALDIMVKFSAEPELAQVVAEDLLAPSVLDVGDFRISIVEGLPSGVPCTSQWNS FAHWLITLCAMSEVTGLSPDVIQAHSCFSFYGDDEIVSTDITLDPNKLTEKLKEYGLK PTRPDKTEGPLVIQKNLAGLTFLRRTIVRDPAGWFGKLDKDSILRQLYWTRGPNHEDP METMVPHSQRAVQLMALLGEASLHGSNFYSKVSRMVINEIKEGGLEFYVPRHEAMFRW MRFSDLSTWEGDRNLAPNGVNEDGV" CDS 5071..6714 /codon_start=1 /product="major capsid protein" /protein_id="AEP04093.1" /translation="MKMASNDAAPSTDGSAGLVPEVNNETMALEPVVGAPLAAPVAGQ HNIIDPWIKMNFVQAPNGEFTVSPRNAPGEILLDLELGPDLNPYLSHLARMYNGYAGG MEVQVVLAGNAFTAGKIIFAAVPPNFPAENLSAAQVTMCPHVIVDVRQLEPVMLPMPD IRNKLFHYNQVDDPKLRLLAYLYTPLRANNAGDDVFTVSCRVLTRPTPDFEFMFLVPP TVESKTKPFSLPSLTLDELSNSRFPAPIVQLYTNPHDNLVVQPQNGRCTIDGLLQGTT QLVSCNVCSFRGTIGDGQPASHSEEEIMPMAFNIQRELMLENLDGSPYDPTDDIPAVL GSPDFQGVIFGILSQRNGDGQTRAHEAKVDTRAARFAPKLGFVVATVESTDFHANQPS RFTPVGLGGDGNQDFAQWNLPTYGGALTNNTNLAPPVMPVYPGEQLLFFRSQLPSSGG VVGGWLDCLLPQEWVQHFFQESATSQSDVALVRYINPTTGRVLFEAKLHKQGFLTVAA SGSYPLVVPADGYFRFESWVNQFYTLAPMGNGSGRRRTR" CDS 6714..7475 /codon_start=1 /product="minor structural protein" /protein_id="AEP04094.1" /translation="MAGQILLGLATDLIGGGIGSLINAGANAINQKVEYDFNKKLQSF SFAHDKEMLQAQVDATRQLQQDLIQLKQDTLLSAGYLPADAARGSLGVPMTKALDWNG TRYWAPNSMSTSSYSGRFSRPTSNLTFQNPQPPRQPPKAPTSTSGSTSASSVSSAPTV STGLSSSSTTPSRSSRSSTTTDRTREWVDSQNLGPYMDGALQTAFVTPPSSRSSSVGT VSTVPDFVLDSWTPSFNTRRQPLFAHLRRRGESQA" ORIGIN 1 gtgaaatgaa gatggcgtct aacgacgcta ccactgcctc ttgtggcgaa aacaccacta 61 agaaagacag tgacaagccc ttttggagct ttagctccaa aggggacttc ttctccaacg 121 ttaaagttgg ttttaagaaa aagactacta agactccacc agaggagccc ttcatccccc 181 ctgatgatcg gggtggggcg gaacaggtcc aacccctcga agaacccgcg gataccaccc 241 taaggtataa cgcgcgggat aacacaattg aagggctccc tgaacttgat tacgtcgaaa 301 tggatgagac caaggacacc gcctacgccg tcccaccact caatttgcga gaacaccaac 361 cagcgcccga accactcccg ggcgcgataa tagagatgtg ggatggcgag atttaccact 421 atggtatcta tgctggtggt ggtaaagttc tgggtgtgca caaaccagca gccgccatct 481 gcctggcgac cattgagctg acccccatct ctctttactg gagagtcgtc tacacacccc 541 agaactccat ccccatagat tcactgcgcc gcctggcagg cgagcgcttt ccttacacag 601 cctttgataa caactgctac actttctgtt gctgggtttt ggaccttaat gactcatggc 661 tctctaggag gatggtcact aggaccactg gtttctttag gccctaccaa gactggaaca 721 ccaaacctgt ccctacagta gatgacagca agctgaaaaa ggttgccaac gtgattctat 781 gcggcctgac ctcccttttc tctagaccca tcaaagacat agttgggaag cttaagcccc 841 ttaacctcat caatatactg gcaacctgtg attggacttt tggcggaatt gtggagtccc 901 ttgtcctggt gggtgagctt ttcgggatct tctggacgcc gccagatgtt accagttttc 961 ttgcttcaat cctagatgac ttccagctcc agggcccaga ggatttagca gctgaggtcg 1021 tcccagtact tatggggggt ctcggattag tccttggctt caccacagaa aagattgggc 1081 gcatgctgtc atccgctgct tcgacgctgc gcgcctgtaa agaccttggg gcctatggcc 1141 tcgacatatt gaagctggtg gtcaagtggt tcttcccgaa aaaggaggaa caagcagagc 1201 ttgaaatggt gcgttcaata gaggacgccg ttttggacct tgaggcgttg gaaaacaacc 1261 acctcaccac ccttcttaag gacaaggata gcctgacggc gtttatgaag actctcgata 1321 tggaggaaga aaaggcgcgg aagctttcaa cgcgctcgtc atcaccagat attgtcggca 1381 ccataaacgc cttgctcgcc agaatttcag cagccaggtc gctcctacac aaggcacggg 1441 aagaactttg cgccaggatt cgcccggtgg tcgtcatgat ctccggcaga ccgggcatag 1501 gcaaaaccca catggcccgc cacttggcgc aaaaggtcgc tgcggccatt ggtggcgaca 1561 aaaggatcgg cttggtgcct aggaatggcg ttgaccactg ggacgcctac aagggagaac 1621 gcatagtctt gtgggatgat tatggtatga gtaacccaat caaggatgcc ttgacactcc 1681 aggagttggc cgacacgtgc ccagtcaccc taaattgtga taggattgag aataagggta 1741 aactctttga tagtgacatc attgtgataa ccaccaattt gaccagccct gccccacttg 1801 actatgttaa ttttgaggct tgctctagac gggtggactt cctggtctat gcggagtcac 1861 ctgacgttga gaaggtgaag aaagagtttc ctggccaacc cgacatgtgg aaggacgctt 1921 atcaacagga ccactcgcac atcaagctac agctggcccc tcaaggaggt tttgataaaa 1981 atggtaacac cccttatgga aagggcgtga tgaagacact cacccaaaac tccctcgtgg 2041 cgcgtgtcgc cgccctcgtc catgagaggg ctgatgagtt cgccctacgg ggtgacgatc 2101 tgcccctcta caacttcgat gtggacaaga taaactcctt caggaagatg gctgctgaca 2161 acagatacgg gttctttgag acaatgaagg tcggggctgc tctgaaaaat gtggattcaa 2221 tggagggtct caagactgcc ctaaaagggg tcaccctgaa accctgcaag gtggtttaca 2281 aggggacgat ctaccagatt gagtcaggcc gtggcggact cgcggtcaag aagctagagg 2341 accgctatgc ccaaagctct ggttccttat ttggtgtgct cacgagagtc cgccaggcga 2401 gagccaaata ctaccttaaa tgctttcagg agctgattta caccaccctg cagatcgctg 2461 gggccgcttt cgtgacatcg aggatagtta ggaggtctaa ctggtgcaac tcttggcgac 2521 aggcagctga gcccggcacc ttggccccag ccgaggagcc actcccagca caaccccaag 2581 actgggaggt cacccctgtt gcggcagatc aggagggaaa gaaggggaag aacaaaaagg 2641 gtcgtggaaa gaaacacacg gccttctcca gcaagggact cagtgatgag gagtatgatg 2701 agtataaaag gataagggag gaacgcgagg gcaagtattc cattgaagaa tacctccgcg 2761 accgagaccg ctactatgaa gagctggcca tcgcacaagc aacagaagag aacttcgcag 2821 aggatgatga gatgaggctc cgccagagaa ttttcaggcc caccaagaag cagaggaggg 2881 aggagagagc cactcttggc ttggtgtctg gcactgaaat cagaaaaagg aaggctgatg 2941 acttccaacc taagggtaaa ctgtgggctg acgacagtcg tgaggtcgac tacaacgaga 3001 ccatcaattt tgaggcccca tcaagcatct ggtcacgtgt cgtccccttt ggcaccggct 3061 gggccttctg ggtgtccccg agccttttga ttaccaccac tcatgtcgtg cccaaggata 3121 caaccgagat ctttggtgtg ccaatcgcgc agattcaagt ccataaatca ggcgagtttt 3181 gccgcctgag attcccccga cctatgagga ctgatgtcaa tggcctgatc ttggaggagg 3241 gcgcccccga gggcactgtt tgcaccatcc ttattaagag atccagtgga gaactcctgc 3301 cccttgcggt gagaatggga acccacgcca ccatgaagat acaaggcaga acaattggcg 3361 gccagatggg catgctcctc actggggcta acgcaaagaa catggacctg ggaactagtc 3421 ctggagactg cggctgcccc tacatataca agaggggtaa tgactttgtg gtcgcggggg 3481 tgcacactgc tgctgcgagg ggcggtaaca cggtggtctg tgccactcag ggtcctgatg 3541 gtgaggccac cttagagggc ggtgagaacc acggcactta ctgtggcgcc ccaatcttgg 3601 gaccagggaa atctcccaag ttgagcacaa agactaagtt ttggaggtcc tccacggccc 3661 cgcttccccc tggaacctat gaaccagcct atctgggtgg gagagacccc cgcgtggaaa 3721 atggcccatc actacagcag gtcatgagag accaacttaa gcccttcacc gcccctagag 3781 gaaagccacc taaaccctct gtcctggact ccgccaagga caccatagtg aactttctgg 3841 agcagaccct tgaacccgct aaaaagtgga gttactcaca ggcttgccaa tccttggaca 3901 agaccacctc tagcggcgat ccccaccatg ttaggaagaa tgaccattgg aatggtgaga 3961 ccttcacggg ccctctggca gaccaggcct caaaggctaa tctcctctac gagcagggta 4021 aacatgtcca acccgtctac acggccgccc tgaaggatga acttgtcaag accgaaaaga 4081 tttacggcac agtgaagaag aggctcctct ggggctcgga cctgggcacg atgatcagat 4141 gtgcacgagc ctttggaggt ttgatggagg agatgaaaga gaactgcatt ctgctgccaa 4201 tcagggtagg gatgaacatg aacgaggatg gaccagctat cttcgagagg cacgcgcggc 4261 acacctacca ctttgatgct gactactcac ggtgggactc cacccaacaa agaggcatcc 4321 tagccgccgc gttggacatc atggtgaagt tttccgccga accggagcta gctcaggtgg 4381 tggcggagga tctccttgcc cccagcgtcc tcgacgttgg cgatttccgc atctctatcg 4441 tggagggcct cccctctggg gtcccgtgta catcacaatg gaactccttt gcccattggc 4501 tgatcactct ctgtgccatg tcagaagtga cgggtctctc acccgacgtg attcaggccc 4561 attcctgctt ttccttctat ggtgatgatg agatcgtgag cacggacatc actttggacc 4621 ccaataaact tacagaaaaa ttgaaagaat atggcctgaa gccaactagg ccagacaaaa 4681 ctgaaggacc cttggtgatc cagaagaact tggcagggct aaccttcttg aggaggacga 4741 tagtccgcga cccagctggt tggtttggta agcttgacaa ggactccatc ttgaggcaac 4801 tctactggac cagagggcca aaccatgaag accccatgga aactatggtg ccacattcgc 4861 aaagagcagt acaattgatg gccctcctgg gagaggcctc actgcatggt tccaacttct 4921 acagcaaagt gagcagaatg gtaataaatg agataaaaga aggtggtctg gaattttacg 4981 tgcccagaca cgaagccatg tttcgctgga tgcggttctc agacctcagc acgtgggagg 5041 gcgatcgcaa tctggctccc aatggtgtga atgaagatgg cgtctaacga cgctgctcca 5101 tctacggatg gatctgccgg tctcgtgcca gaggtcaata acgagactat ggctttggaa 5161 ccagttgtgg gggctcctct cgctgctcct gtagctggcc aacataatat tatagacccc 5221 tggattaaaa tgaattttgt gcaggcaccc aatggagagt ttacggtttc ccctcggaat 5281 gcccccggtg aaattttgtt agacttggaa cttggccctg accttaaccc ttatctttct 5341 cacctggccc gcatgtacaa cggctatgcg ggtggcatgg aggtgcaggt tgttttagca 5401 ggaaatgctt ttactgccgg gaagattatt tttgctgctg ttccacctaa cttcccagca 5461 gagaacctca gtgccgccca ggttaccatg tgtccccatg tgatagttga tgtcaggcaa 5521 ttggaaccag tcatgctccc catgcctgat attaggaaca aactatttca ttacaaccaa 5581 gttgatgatc caaagcttag attgttggct tacctttaca caccccttcg agccaacaat 5641 gctggagatg atgttttcac ggtttcttgc cgggttctta ctaggccaac tcctgatttt 5701 gagtttatgt ttttggttcc ccccactgtt gaatctaaaa ctaagccttt ttctttacct 5761 agtcttaccc ttgatgaact ttccaattcc aggtttcctg cgcctatagt gcagctttac 5821 acaaaccctc atgacaacct ggttgtgcaa ccccaaaatg ggaggtgcac tatagatggc 5881 ctcttgcagg gcaccacaca actcgtgtcc tgtaatgttt gcagttttag agggaccatc 5941 ggtgatggac agccggcaag ccacagtgag gaggagatca tgcccatggc cttcaacatc 6001 caacgtgagc tcatgctaga aaaccttgat ggctcaccct atgacccaac tgatgacatc 6061 cccgcagtgc tgggctcccc tgactttcag ggtgtcatat ttggcatcct cagtcagagg 6121 aatggtgatg ggcaaaccag ggcacatgag gccaaggtgg acaccagggc ggcccgcttc 6181 gcccctaaac ttggctttgt tgtggccact gtggagagca cagacttcca cgccaatcag 6241 cctagcagat tcacccctgt tgggttaggt ggggatggca atcaggactt tgctcagtgg 6301 aatctaccaa cctacggtgg cgcgctgacg aacaacacca acctcgcccc acccgtgatg 6361 cccgtttacc caggggagca actcctattc ttccgctccc agctaccgag ctctggtggt 6421 gtggttggcg ggtggctgga ttgcctgctc cctcaggagt gggttcaaca cttcttccag 6481 gagtcggcca cctctcaaag cgatgtggcc ctagtcaggt atataaaccc caccacgggc 6541 agggtgcttt ttgaggcaaa gttgcataaa cagggctttc tcactgtggc cgcctcgggt 6601 tcttacccct tggttgttcc cgccgatggt tatttcagat ttgagtcctg ggtgaatcag 6661 ttttatactt tagcccccat gggaaatggt agtgggcgta ggagaacccg ttaatggcag 6721 gacaaatttt attgggctta gctactgatc ttattggggg tgggataggt tctttaatca 6781 atgctggtgc taatgcaatt aatcagaagg ttgagtatga ttttaataag aagttgcaat 6841 ctttctcttt tgcccatgat aaagagatgc tacaagcaca agtggatgca actagacaat 6901 tacagcaaga tttgattcaa ttgaagcaag atactctgct ttctgctggt tatctccctg 6961 ctgatgcagc tagaggctct cttggtgtgc ccatgactaa ggctctggac tggaatggta 7021 cgagatactg ggcacctaat tctatgagca cctccagcta ttcagggcgt ttctctcgcc 7081 ccacttcaaa cttgaccttc cagaacccgc aacctcctcg ccaaccaccc aaggctccaa 7141 cttccacttc ggggtctacg agcgcctctt cggtctcgtc agccccaact gtgtcaacag 7201 ggctgtccag ttcttccact actccatcac ggtcgtcaag gtcttcaacc accacagaca 7261 ggaccagaga gtgggtggat tcacagaacc taggccccta tatggatggt gccctgcaga 7321 cggcgtttgt tacacctccg tctagcagga gctctagtgt cggcacggtc tcgaccgtgc 7381 cagactttgt tttggactca tggacccctt cctttaacac gaggaggcaa ccgctgtttg 7441 cacacctacg cagacgggga gagtcacaag cttaacagct tagtgaaaga tagggttttt 7501 ctttttcttt cttttctgtt ccctgatctc caaaaaaaaa aaaaaaaa //