Typing tool
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Typing tool
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Complete norovirus genomes
| HQ392821 | GII.11 | |
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| GII.P11 |
ORF1: 6..5087
ORF2: 5071..6714
ORF3: 6714..7475
LOCUS HQ392821 7548 bp RNA linear VRL 01-JUN-2012
DEFINITION Norovirus pig/GII/Ch6/China/2009, complete genome.
ACCESSION HQ392821
VERSION HQ392821.1
KEYWORDS .
SOURCE Norovirus pig/GII/Ch6/China/2009
ORGANISM Norovirus pig/GII/Ch6/China/2009
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7548)
AUTHORS Shen,Q., Zhang,W., Yang,S., Cui,L. and Hua,X.
TITLE Complete genome sequence of a new-genotype porcine norovirus
isolated from piglets with diarrhea
JOURNAL J. Virol. 86 (12), 7015-7016 (2012)
PUBMED 22628399
REFERENCE 2 (bases 1 to 7548)
AUTHORS Shen,Q., Zhang,W. and Hua,X.
TITLE Recombinant Porcine Norovirus Isolated from China That Contributed
to a Sporadic Cases of Gastroenteritis in Piglet
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 7548)
AUTHORS Shen,Q., Zhang,W. and Hua,X.
TITLE Direct Submission
JOURNAL Submitted (08-OCT-2010) School of Agriculture and Biology, Shanghai
JiaoTong University, 800 Dongchuan Road, Shanghai 200240, P.R.
China
FEATURES Location/Qualifiers
source 1..7548
/organism="Norovirus pig/GII/Ch6/China/2009"
/mol_type="genomic RNA"
/isolation_source="fecal sample"
/host="swine"
/db_xref="taxon:1088689"
/geo_loc_name="China"
/collection_date="Aug-2009"
/note="group: GII"
5'UTR 1..5
CDS 6..5087
/codon_start=1
/product="polyprotein"
/protein_id="AEP04092.1"
/translation="MKMASNDATTASCGENTTKKDSDKPFWSFSSKGDFFSNVKVGFK
KKTTKTPPEEPFIPPDDRGGAEQVQPLEEPADTTLRYNARDNTIEGLPELDYVEMDET
KDTAYAVPPLNLREHQPAPEPLPGAIIEMWDGEIYHYGIYAGGGKVLGVHKPAAAICL
ATIELTPISLYWRVVYTPQNSIPIDSLRRLAGERFPYTAFDNNCYTFCCWVLDLNDSW
LSRRMVTRTTGFFRPYQDWNTKPVPTVDDSKLKKVANVILCGLTSLFSRPIKDIVGKL
KPLNLINILATCDWTFGGIVESLVLVGELFGIFWTPPDVTSFLASILDDFQLQGPEDL
AAEVVPVLMGGLGLVLGFTTEKIGRMLSSAASTLRACKDLGAYGLDILKLVVKWFFPK
KEEQAELEMVRSIEDAVLDLEALENNHLTTLLKDKDSLTAFMKTLDMEEEKARKLSTR
SSSPDIVGTINALLARISAARSLLHKAREELCARIRPVVVMISGRPGIGKTHMARHLA
QKVAAAIGGDKRIGLVPRNGVDHWDAYKGERIVLWDDYGMSNPIKDALTLQELADTCP
VTLNCDRIENKGKLFDSDIIVITTNLTSPAPLDYVNFEACSRRVDFLVYAESPDVEKV
KKEFPGQPDMWKDAYQQDHSHIKLQLAPQGGFDKNGNTPYGKGVMKTLTQNSLVARVA
ALVHERADEFALRGDDLPLYNFDVDKINSFRKMAADNRYGFFETMKVGAALKNVDSME
GLKTALKGVTLKPCKVVYKGTIYQIESGRGGLAVKKLEDRYAQSSGSLFGVLTRVRQA
RAKYYLKCFQELIYTTLQIAGAAFVTSRIVRRSNWCNSWRQAAEPGTLAPAEEPLPAQ
PQDWEVTPVAADQEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEYKRIREEREGKYSIE
EYLRDRDRYYEELAIAQATEENFAEDDEMRLRQRIFRPTKKQRREERATLGLVSGTEI
RKRKADDFQPKGKLWADDSREVDYNETINFEAPSSIWSRVVPFGTGWAFWVSPSLLIT
TTHVVPKDTTEIFGVPIAQIQVHKSGEFCRLRFPRPMRTDVNGLILEEGAPEGTVCTI
LIKRSSGELLPLAVRMGTHATMKIQGRTIGGQMGMLLTGANAKNMDLGTSPGDCGCPY
IYKRGNDFVVAGVHTAAARGGNTVVCATQGPDGEATLEGGENHGTYCGAPILGPGKSP
KLSTKTKFWRSSTAPLPPGTYEPAYLGGRDPRVENGPSLQQVMRDQLKPFTAPRGKPP
KPSVLDSAKDTIVNFLEQTLEPAKKWSYSQACQSLDKTTSSGDPHHVRKNDHWNGETF
TGPLADQASKANLLYEQGKHVQPVYTAALKDELVKTEKIYGTVKKRLLWGSDLGTMIR
CARAFGGLMEEMKENCILLPIRVGMNMNEDGPAIFERHARHTYHFDADYSRWDSTQQR
GILAAALDIMVKFSAEPELAQVVAEDLLAPSVLDVGDFRISIVEGLPSGVPCTSQWNS
FAHWLITLCAMSEVTGLSPDVIQAHSCFSFYGDDEIVSTDITLDPNKLTEKLKEYGLK
PTRPDKTEGPLVIQKNLAGLTFLRRTIVRDPAGWFGKLDKDSILRQLYWTRGPNHEDP
METMVPHSQRAVQLMALLGEASLHGSNFYSKVSRMVINEIKEGGLEFYVPRHEAMFRW
MRFSDLSTWEGDRNLAPNGVNEDGV"
CDS 5071..6714
/codon_start=1
/product="major capsid protein"
/protein_id="AEP04093.1"
/translation="MKMASNDAAPSTDGSAGLVPEVNNETMALEPVVGAPLAAPVAGQ
HNIIDPWIKMNFVQAPNGEFTVSPRNAPGEILLDLELGPDLNPYLSHLARMYNGYAGG
MEVQVVLAGNAFTAGKIIFAAVPPNFPAENLSAAQVTMCPHVIVDVRQLEPVMLPMPD
IRNKLFHYNQVDDPKLRLLAYLYTPLRANNAGDDVFTVSCRVLTRPTPDFEFMFLVPP
TVESKTKPFSLPSLTLDELSNSRFPAPIVQLYTNPHDNLVVQPQNGRCTIDGLLQGTT
QLVSCNVCSFRGTIGDGQPASHSEEEIMPMAFNIQRELMLENLDGSPYDPTDDIPAVL
GSPDFQGVIFGILSQRNGDGQTRAHEAKVDTRAARFAPKLGFVVATVESTDFHANQPS
RFTPVGLGGDGNQDFAQWNLPTYGGALTNNTNLAPPVMPVYPGEQLLFFRSQLPSSGG
VVGGWLDCLLPQEWVQHFFQESATSQSDVALVRYINPTTGRVLFEAKLHKQGFLTVAA
SGSYPLVVPADGYFRFESWVNQFYTLAPMGNGSGRRRTR"
CDS 6714..7475
/codon_start=1
/product="minor structural protein"
/protein_id="AEP04094.1"
/translation="MAGQILLGLATDLIGGGIGSLINAGANAINQKVEYDFNKKLQSF
SFAHDKEMLQAQVDATRQLQQDLIQLKQDTLLSAGYLPADAARGSLGVPMTKALDWNG
TRYWAPNSMSTSSYSGRFSRPTSNLTFQNPQPPRQPPKAPTSTSGSTSASSVSSAPTV
STGLSSSSTTPSRSSRSSTTTDRTREWVDSQNLGPYMDGALQTAFVTPPSSRSSSVGT
VSTVPDFVLDSWTPSFNTRRQPLFAHLRRRGESQA"
ORIGIN
1 gtgaaatgaa gatggcgtct aacgacgcta ccactgcctc ttgtggcgaa aacaccacta
61 agaaagacag tgacaagccc ttttggagct ttagctccaa aggggacttc ttctccaacg
121 ttaaagttgg ttttaagaaa aagactacta agactccacc agaggagccc ttcatccccc
181 ctgatgatcg gggtggggcg gaacaggtcc aacccctcga agaacccgcg gataccaccc
241 taaggtataa cgcgcgggat aacacaattg aagggctccc tgaacttgat tacgtcgaaa
301 tggatgagac caaggacacc gcctacgccg tcccaccact caatttgcga gaacaccaac
361 cagcgcccga accactcccg ggcgcgataa tagagatgtg ggatggcgag atttaccact
421 atggtatcta tgctggtggt ggtaaagttc tgggtgtgca caaaccagca gccgccatct
481 gcctggcgac cattgagctg acccccatct ctctttactg gagagtcgtc tacacacccc
541 agaactccat ccccatagat tcactgcgcc gcctggcagg cgagcgcttt ccttacacag
601 cctttgataa caactgctac actttctgtt gctgggtttt ggaccttaat gactcatggc
661 tctctaggag gatggtcact aggaccactg gtttctttag gccctaccaa gactggaaca
721 ccaaacctgt ccctacagta gatgacagca agctgaaaaa ggttgccaac gtgattctat
781 gcggcctgac ctcccttttc tctagaccca tcaaagacat agttgggaag cttaagcccc
841 ttaacctcat caatatactg gcaacctgtg attggacttt tggcggaatt gtggagtccc
901 ttgtcctggt gggtgagctt ttcgggatct tctggacgcc gccagatgtt accagttttc
961 ttgcttcaat cctagatgac ttccagctcc agggcccaga ggatttagca gctgaggtcg
1021 tcccagtact tatggggggt ctcggattag tccttggctt caccacagaa aagattgggc
1081 gcatgctgtc atccgctgct tcgacgctgc gcgcctgtaa agaccttggg gcctatggcc
1141 tcgacatatt gaagctggtg gtcaagtggt tcttcccgaa aaaggaggaa caagcagagc
1201 ttgaaatggt gcgttcaata gaggacgccg ttttggacct tgaggcgttg gaaaacaacc
1261 acctcaccac ccttcttaag gacaaggata gcctgacggc gtttatgaag actctcgata
1321 tggaggaaga aaaggcgcgg aagctttcaa cgcgctcgtc atcaccagat attgtcggca
1381 ccataaacgc cttgctcgcc agaatttcag cagccaggtc gctcctacac aaggcacggg
1441 aagaactttg cgccaggatt cgcccggtgg tcgtcatgat ctccggcaga ccgggcatag
1501 gcaaaaccca catggcccgc cacttggcgc aaaaggtcgc tgcggccatt ggtggcgaca
1561 aaaggatcgg cttggtgcct aggaatggcg ttgaccactg ggacgcctac aagggagaac
1621 gcatagtctt gtgggatgat tatggtatga gtaacccaat caaggatgcc ttgacactcc
1681 aggagttggc cgacacgtgc ccagtcaccc taaattgtga taggattgag aataagggta
1741 aactctttga tagtgacatc attgtgataa ccaccaattt gaccagccct gccccacttg
1801 actatgttaa ttttgaggct tgctctagac gggtggactt cctggtctat gcggagtcac
1861 ctgacgttga gaaggtgaag aaagagtttc ctggccaacc cgacatgtgg aaggacgctt
1921 atcaacagga ccactcgcac atcaagctac agctggcccc tcaaggaggt tttgataaaa
1981 atggtaacac cccttatgga aagggcgtga tgaagacact cacccaaaac tccctcgtgg
2041 cgcgtgtcgc cgccctcgtc catgagaggg ctgatgagtt cgccctacgg ggtgacgatc
2101 tgcccctcta caacttcgat gtggacaaga taaactcctt caggaagatg gctgctgaca
2161 acagatacgg gttctttgag acaatgaagg tcggggctgc tctgaaaaat gtggattcaa
2221 tggagggtct caagactgcc ctaaaagggg tcaccctgaa accctgcaag gtggtttaca
2281 aggggacgat ctaccagatt gagtcaggcc gtggcggact cgcggtcaag aagctagagg
2341 accgctatgc ccaaagctct ggttccttat ttggtgtgct cacgagagtc cgccaggcga
2401 gagccaaata ctaccttaaa tgctttcagg agctgattta caccaccctg cagatcgctg
2461 gggccgcttt cgtgacatcg aggatagtta ggaggtctaa ctggtgcaac tcttggcgac
2521 aggcagctga gcccggcacc ttggccccag ccgaggagcc actcccagca caaccccaag
2581 actgggaggt cacccctgtt gcggcagatc aggagggaaa gaaggggaag aacaaaaagg
2641 gtcgtggaaa gaaacacacg gccttctcca gcaagggact cagtgatgag gagtatgatg
2701 agtataaaag gataagggag gaacgcgagg gcaagtattc cattgaagaa tacctccgcg
2761 accgagaccg ctactatgaa gagctggcca tcgcacaagc aacagaagag aacttcgcag
2821 aggatgatga gatgaggctc cgccagagaa ttttcaggcc caccaagaag cagaggaggg
2881 aggagagagc cactcttggc ttggtgtctg gcactgaaat cagaaaaagg aaggctgatg
2941 acttccaacc taagggtaaa ctgtgggctg acgacagtcg tgaggtcgac tacaacgaga
3001 ccatcaattt tgaggcccca tcaagcatct ggtcacgtgt cgtccccttt ggcaccggct
3061 gggccttctg ggtgtccccg agccttttga ttaccaccac tcatgtcgtg cccaaggata
3121 caaccgagat ctttggtgtg ccaatcgcgc agattcaagt ccataaatca ggcgagtttt
3181 gccgcctgag attcccccga cctatgagga ctgatgtcaa tggcctgatc ttggaggagg
3241 gcgcccccga gggcactgtt tgcaccatcc ttattaagag atccagtgga gaactcctgc
3301 cccttgcggt gagaatggga acccacgcca ccatgaagat acaaggcaga acaattggcg
3361 gccagatggg catgctcctc actggggcta acgcaaagaa catggacctg ggaactagtc
3421 ctggagactg cggctgcccc tacatataca agaggggtaa tgactttgtg gtcgcggggg
3481 tgcacactgc tgctgcgagg ggcggtaaca cggtggtctg tgccactcag ggtcctgatg
3541 gtgaggccac cttagagggc ggtgagaacc acggcactta ctgtggcgcc ccaatcttgg
3601 gaccagggaa atctcccaag ttgagcacaa agactaagtt ttggaggtcc tccacggccc
3661 cgcttccccc tggaacctat gaaccagcct atctgggtgg gagagacccc cgcgtggaaa
3721 atggcccatc actacagcag gtcatgagag accaacttaa gcccttcacc gcccctagag
3781 gaaagccacc taaaccctct gtcctggact ccgccaagga caccatagtg aactttctgg
3841 agcagaccct tgaacccgct aaaaagtgga gttactcaca ggcttgccaa tccttggaca
3901 agaccacctc tagcggcgat ccccaccatg ttaggaagaa tgaccattgg aatggtgaga
3961 ccttcacggg ccctctggca gaccaggcct caaaggctaa tctcctctac gagcagggta
4021 aacatgtcca acccgtctac acggccgccc tgaaggatga acttgtcaag accgaaaaga
4081 tttacggcac agtgaagaag aggctcctct ggggctcgga cctgggcacg atgatcagat
4141 gtgcacgagc ctttggaggt ttgatggagg agatgaaaga gaactgcatt ctgctgccaa
4201 tcagggtagg gatgaacatg aacgaggatg gaccagctat cttcgagagg cacgcgcggc
4261 acacctacca ctttgatgct gactactcac ggtgggactc cacccaacaa agaggcatcc
4321 tagccgccgc gttggacatc atggtgaagt tttccgccga accggagcta gctcaggtgg
4381 tggcggagga tctccttgcc cccagcgtcc tcgacgttgg cgatttccgc atctctatcg
4441 tggagggcct cccctctggg gtcccgtgta catcacaatg gaactccttt gcccattggc
4501 tgatcactct ctgtgccatg tcagaagtga cgggtctctc acccgacgtg attcaggccc
4561 attcctgctt ttccttctat ggtgatgatg agatcgtgag cacggacatc actttggacc
4621 ccaataaact tacagaaaaa ttgaaagaat atggcctgaa gccaactagg ccagacaaaa
4681 ctgaaggacc cttggtgatc cagaagaact tggcagggct aaccttcttg aggaggacga
4741 tagtccgcga cccagctggt tggtttggta agcttgacaa ggactccatc ttgaggcaac
4801 tctactggac cagagggcca aaccatgaag accccatgga aactatggtg ccacattcgc
4861 aaagagcagt acaattgatg gccctcctgg gagaggcctc actgcatggt tccaacttct
4921 acagcaaagt gagcagaatg gtaataaatg agataaaaga aggtggtctg gaattttacg
4981 tgcccagaca cgaagccatg tttcgctgga tgcggttctc agacctcagc acgtgggagg
5041 gcgatcgcaa tctggctccc aatggtgtga atgaagatgg cgtctaacga cgctgctcca
5101 tctacggatg gatctgccgg tctcgtgcca gaggtcaata acgagactat ggctttggaa
5161 ccagttgtgg gggctcctct cgctgctcct gtagctggcc aacataatat tatagacccc
5221 tggattaaaa tgaattttgt gcaggcaccc aatggagagt ttacggtttc ccctcggaat
5281 gcccccggtg aaattttgtt agacttggaa cttggccctg accttaaccc ttatctttct
5341 cacctggccc gcatgtacaa cggctatgcg ggtggcatgg aggtgcaggt tgttttagca
5401 ggaaatgctt ttactgccgg gaagattatt tttgctgctg ttccacctaa cttcccagca
5461 gagaacctca gtgccgccca ggttaccatg tgtccccatg tgatagttga tgtcaggcaa
5521 ttggaaccag tcatgctccc catgcctgat attaggaaca aactatttca ttacaaccaa
5581 gttgatgatc caaagcttag attgttggct tacctttaca caccccttcg agccaacaat
5641 gctggagatg atgttttcac ggtttcttgc cgggttctta ctaggccaac tcctgatttt
5701 gagtttatgt ttttggttcc ccccactgtt gaatctaaaa ctaagccttt ttctttacct
5761 agtcttaccc ttgatgaact ttccaattcc aggtttcctg cgcctatagt gcagctttac
5821 acaaaccctc atgacaacct ggttgtgcaa ccccaaaatg ggaggtgcac tatagatggc
5881 ctcttgcagg gcaccacaca actcgtgtcc tgtaatgttt gcagttttag agggaccatc
5941 ggtgatggac agccggcaag ccacagtgag gaggagatca tgcccatggc cttcaacatc
6001 caacgtgagc tcatgctaga aaaccttgat ggctcaccct atgacccaac tgatgacatc
6061 cccgcagtgc tgggctcccc tgactttcag ggtgtcatat ttggcatcct cagtcagagg
6121 aatggtgatg ggcaaaccag ggcacatgag gccaaggtgg acaccagggc ggcccgcttc
6181 gcccctaaac ttggctttgt tgtggccact gtggagagca cagacttcca cgccaatcag
6241 cctagcagat tcacccctgt tgggttaggt ggggatggca atcaggactt tgctcagtgg
6301 aatctaccaa cctacggtgg cgcgctgacg aacaacacca acctcgcccc acccgtgatg
6361 cccgtttacc caggggagca actcctattc ttccgctccc agctaccgag ctctggtggt
6421 gtggttggcg ggtggctgga ttgcctgctc cctcaggagt gggttcaaca cttcttccag
6481 gagtcggcca cctctcaaag cgatgtggcc ctagtcaggt atataaaccc caccacgggc
6541 agggtgcttt ttgaggcaaa gttgcataaa cagggctttc tcactgtggc cgcctcgggt
6601 tcttacccct tggttgttcc cgccgatggt tatttcagat ttgagtcctg ggtgaatcag
6661 ttttatactt tagcccccat gggaaatggt agtgggcgta ggagaacccg ttaatggcag
6721 gacaaatttt attgggctta gctactgatc ttattggggg tgggataggt tctttaatca
6781 atgctggtgc taatgcaatt aatcagaagg ttgagtatga ttttaataag aagttgcaat
6841 ctttctcttt tgcccatgat aaagagatgc tacaagcaca agtggatgca actagacaat
6901 tacagcaaga tttgattcaa ttgaagcaag atactctgct ttctgctggt tatctccctg
6961 ctgatgcagc tagaggctct cttggtgtgc ccatgactaa ggctctggac tggaatggta
7021 cgagatactg ggcacctaat tctatgagca cctccagcta ttcagggcgt ttctctcgcc
7081 ccacttcaaa cttgaccttc cagaacccgc aacctcctcg ccaaccaccc aaggctccaa
7141 cttccacttc ggggtctacg agcgcctctt cggtctcgtc agccccaact gtgtcaacag
7201 ggctgtccag ttcttccact actccatcac ggtcgtcaag gtcttcaacc accacagaca
7261 ggaccagaga gtgggtggat tcacagaacc taggccccta tatggatggt gccctgcaga
7321 cggcgtttgt tacacctccg tctagcagga gctctagtgt cggcacggtc tcgaccgtgc
7381 cagactttgt tttggactca tggacccctt cctttaacac gaggaggcaa ccgctgtttg
7441 cacacctacg cagacgggga gagtcacaag cttaacagct tagtgaaaga tagggttttt
7501 ctttttcttt cttttctgtt ccctgatctc caaaaaaaaa aaaaaaaa
//