Human calicivirus
Typing tool

Complete norovirus genomes

HQ115742  GII.12
 GII.P33

Length: 3,186 | 3 CDS 

ORF1: 1..775
ORF2: 756..2363
ORF3: 2363..3142

LOCUS       HQ115742                3186 bp    RNA     linear   VRL 25-JUL-2016
DEFINITION  Norovirus Hu/GIIg-GII12/Velence/HUN4417/2010/HUN RNA-dependent RNA
            polymerase gene, partial cds; and major capsid region and minor
            capsid protein genes, complete cds.
ACCESSION   HQ115742
VERSION     HQ115742.1
KEYWORDS    .
SOURCE      Norovirus Hu/GIIg-GII12/Velence/HUN4417/2010/HUN
  ORGANISM  Norovirus Hu/GIIg-GII12/Velence/HUN4417/2010/HUN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3186)
  AUTHORS   Reuter,G., Boros,A. and Pankovics,P.
  TITLE     Epidemic spread of recombinant Norovirus GIIg/GII12 in Hungary
            (2009/2010)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3186)
  AUTHORS   Reuter,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2010) Regional Laboratory of Virology, ANTSZ
            Baranya County Institute of State Public Health Service, Szabadsag
            u. 7., Pecs H-7623, Hungary
FEATURES             Location/Qualifiers
     source          1..3186
                     /organism="Norovirus
                     Hu/GIIg-GII12/Velence/HUN4417/2010/HUN"
                     /mol_type="genomic RNA"
                     /strain="Hu/GIIg-GII12/Velence/HUN4417/2010/HUN"
                     /isolation_source="fecal sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:909665"
                     /country="Hungary"
                     /collection_date="Mar-2010"
                     /note="genotype: GIIg/GII12 recombinant"
     CDS             <1..775
                     /note="ORF1"
                     /codon_start=2
                     /product="RNA-dependent RNA polymerase"
                     /protein_id="ADO85554.1"
                     /translation="VLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEG
                     LPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDTIQANSLFSFYGDDEIVSTDIKLHP
                     EKLTANLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILR
                     QMYWTRGPNHEDPAETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGM
                     DFYVPRQEPMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
     CDS             756..2363
                     /note="ORF2"
                     /codon_start=1
                     /product="major capsid region"
                     /protein_id="ADO85555.1"
                     /translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
                     NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
                     VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
                     VRNNFFHYNQQNEPWMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
                     TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT
                     QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG
                     VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEENDVHINQPTKFTPVGLFES
                     EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ
                     EWIQHLYQESAPSQTDVALIRITNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
                     YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
     CDS             2363..3142
                     /note="ORF3"
                     /codon_start=1
                     /product="minor capsid protein"
                     /protein_id="ADO85556.1"
                     /translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLLQA
                     SLNHDKEMLQAQIRATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
                     NRHWAPGAMKTTAFSGGFTSASHARTVDLTRKISATPASMPVSRPSSTTSTVSTRSTL
                     ISGSSNPSSLARSSSSISSQPTSSSSRTSDWVRSQNRALEPYMSGALRTAYVTPPSSR
                     ASSNGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRRRGESQA"
     3'UTR           3143..>3186
ORIGIN      
        1 tgttttagct gcagccctgg agatcatggt aaaattttcc ccagaaccac acctggccca
       61 gatcgttgca gaggatctcc tatcccccag cgtgatggac gtgggcgatt tcaaaatatc
      121 aatcactgaa gggctcccct ctggggtgcc ttgcacctca caatggaatt ctattgctca
      181 ttggctcctc acgctttgtg cactctctga ggtaacagat ttgtctcctg acaccatcca
      241 agcaaactca ctcttctcct tctatggtga cgatgaaatt gtaagcacag acatcaaatt
      301 acatccagaa aagctgacag ctaacctaaa agagtatgga ctcaagccaa cccgtcctga
      361 caagactgaa gggcctctgg tcatttctga agacttagat ggtctgacct tcttacggag
      421 gactgtgacc cgtgacccag caggttggtt tggaaaattg gaacaaagct caatacttag
      481 acaaatgtat tggaccaggg gccccaacca tgaggatccc gctgaaacaa tgataccaca
      541 ctcccaaaga cccatacagt tgatgtccct attaggtgaa gctgcattac atggcccatc
      601 attctacagc aaaatcagca aattggtcat ctcagagttg aaagaaggtg gtatggactt
      661 ttacgtgcca aggcaagagc caatgtttcg atggatgagg ttctcagact tgagcacgtg
      721 ggagggcgat cgcaatctgg ctcccaattt tgtgaatgaa gatggcgtcg aatgacgccg
      781 ctccatctaa tgatggtgca gccggtctcg taccagaggt caacaatgag accatggccc
      841 ttgaaccggt ggctggggct tcaatagccg ccccactcac cggtcaaaat aatgttatag
      901 acccctggat tagattaaac tttgtgcagg ctcccaatgg agagtttaca gtttcacccc
      961 gcaattcgcc tggggaagtc ctgctaaact tggaattagg ccctgaacta aatccatatt
     1021 tggcacacct ttccagaatg tacaatggtt atgcaggtgg agttgaggtg caagtactac
     1081 tggctgggaa cgcgttcacg gctggaaaac tggtattcgc cgcagttccc cctcattttc
     1141 cattagaaaa cataagccct ggccaaataa ccatgttccc tcatgtaatt attgatgtta
     1201 ggactttaga accagtccta ttgcctcttc cagatgttag gaacaatttc tttcactaca
     1261 atcagcaaaa cgaaccatgg atgaggcttg tggcaatgct ctataccccc cttagatcta
     1321 atggttctgg tgatgatgta tttactgtct cctgtagagt gcttactcga ccctctcctg
     1381 attttgattt caattatttg gtacccccta cagttgaatc taaaactaaa cccttcacac
     1441 tccctatctt gaccataggg gagttaacca attccagatt ccctgtgcct atagatgaac
     1501 tctatactag ccccaatgag agtttggtgg tacaacccca gaacgggaga tgcgcgctgg
     1561 acggggagtt gcagggtact actcagctcc tccccacggc gatctgctcg ttcaggggtc
     1621 ggattaatca gaaagtgagt ggagagaatc atgtttggaa tatgcaagtc accaacatta
     1681 acggaacccc ttttgatcca acagaggatg ttccagctcc tctaggtaca ccagactttt
     1741 ctggcaagct ctttggcgtc ttaagccaga gggaccatga taatgcatgt aggagccatg
     1801 atgcagtgat tgcaactaat tctgctaaat ttaccccaaa attgggcgct atacaaatag
     1861 gcacatggga agaaaatgat gtacacatca accaacccac caagtttact ccagttggct
     1921 tgttcgaaag tgaaggtttt aatcagtgga cactccctaa ttattctgga gccttgacac
     1981 tcaatatggg gttggccccc cctgtggccc ccacatttcc tggtgagcaa attcttttct
     2041 tcagatccca cattcctctc aaaggaggtg tggcagaccc agttattgat tgtctcttgc
     2101 cccaagagtg gatccaacac ctttaccagg agtcagcccc ttcacaaaca gatgtagcac
     2161 tgatcaggat tacaaatcca gacacagggc gtgtcctatt tgaagcaaaa ttgcacagga
     2221 gtggctacat cacagtggcc aatactggta gcagaccaat tgtggtgcca gctaatggtt
     2281 acttcaggtt tgactcttgg gttaatcagt tttattctct cgcccccatg ggaactggga
     2341 atggacgcag aagggtgcag taatggctgg agctttcata gcaggtcttg ctggtgatat
     2401 agtcaccaat ggtattggct cactcgtgaa cgctggggcc aatgcaataa accaaaaagt
     2461 agactttgaa aacaacaagc aactactaca ggcatctttg aaccatgaca aagagatgct
     2521 gcaagctcaa attcgagcca ccaaacagct acaggctgat atgattgcaa tcagacaagg
     2581 ggtgttgacc gcgggcggct tctcccccac tgatgcagca agaggtgcag tcaacgcacc
     2641 catgacacag gtcttggact ggaacgggaa cagacattgg gcccccggag ccatgaaaac
     2701 aactgctttc tccggtggat tcaccagtgc ttctcatgcc aggaccgttg acctgactag
     2761 gaaaatatca gccacaccag cctctatgcc tgtctctagg cccagttcta ctacttctac
     2821 tgtttccacc cgttctacct tgattagcgg atcctctaat ccttcttctc tagctaggag
     2881 ttcttctagt atttcttccc aacctacttc ctcatcctct cggactagtg attgggtacg
     2941 tagccaaaac agagcactgg agccttatat gagcggggcg ctgcgtacag cctacgtgac
     3001 gcctccatct agtagggctt ctagtaatgg cacagtctca accgtgccaa aagaggtttt
     3061 ggactcctgg acatctgcat tcaacacaca cagacaaccg ctgtttgctc atctccgtcg
     3121 gagaggggag tcacaagctt agtgaaaaga tggtcttttc tttcattcct ttgaatctct
     3181 gtcttt
//