Typing tool
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Typing tool
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Complete norovirus genomes
| HQ115742 | GII.12 | |
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| GII.P33 |
ORF1: 1..775
ORF2: 756..2363
ORF3: 2363..3142
LOCUS HQ115742 3186 bp RNA linear VRL 25-JUL-2016
DEFINITION Norovirus Hu/GIIg-GII12/Velence/HUN4417/2010/HUN RNA-dependent RNA
polymerase gene, partial cds; and major capsid region and minor
capsid protein genes, complete cds.
ACCESSION HQ115742
VERSION HQ115742.1
KEYWORDS .
SOURCE Norovirus Hu/GIIg-GII12/Velence/HUN4417/2010/HUN
ORGANISM Norovirus Hu/GIIg-GII12/Velence/HUN4417/2010/HUN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3186)
AUTHORS Reuter,G., Boros,A. and Pankovics,P.
TITLE Epidemic spread of recombinant Norovirus GIIg/GII12 in Hungary
(2009/2010)
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3186)
AUTHORS Reuter,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2010) Regional Laboratory of Virology, ANTSZ
Baranya County Institute of State Public Health Service, Szabadsag
u. 7., Pecs H-7623, Hungary
FEATURES Location/Qualifiers
source 1..3186
/organism="Norovirus
Hu/GIIg-GII12/Velence/HUN4417/2010/HUN"
/mol_type="genomic RNA"
/strain="Hu/GIIg-GII12/Velence/HUN4417/2010/HUN"
/isolation_source="fecal sample"
/host="Homo sapiens"
/db_xref="taxon:909665"
/geo_loc_name="Hungary"
/collection_date="Mar-2010"
/note="genotype: GIIg/GII12 recombinant"
CDS <1..775
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="ADO85554.1"
/translation="VLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISITEG
LPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDTIQANSLFSFYGDDEIVSTDIKLHP
EKLTANLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILR
QMYWTRGPNHEDPAETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGM
DFYVPRQEPMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
CDS 756..2363
/note="ORF2"
/codon_start=1
/product="major capsid region"
/protein_id="ADO85555.1"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQNEPWMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT
QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG
VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEENDVHINQPTKFTPVGLFES
EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ
EWIQHLYQESAPSQTDVALIRITNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 2363..3142
/note="ORF3"
/codon_start=1
/product="minor capsid protein"
/protein_id="ADO85556.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLLQA
SLNHDKEMLQAQIRATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
NRHWAPGAMKTTAFSGGFTSASHARTVDLTRKISATPASMPVSRPSSTTSTVSTRSTL
ISGSSNPSSLARSSSSISSQPTSSSSRTSDWVRSQNRALEPYMSGALRTAYVTPPSSR
ASSNGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRRRGESQA"
3'UTR 3143..>3186
ORIGIN
1 tgttttagct gcagccctgg agatcatggt aaaattttcc ccagaaccac acctggccca
61 gatcgttgca gaggatctcc tatcccccag cgtgatggac gtgggcgatt tcaaaatatc
121 aatcactgaa gggctcccct ctggggtgcc ttgcacctca caatggaatt ctattgctca
181 ttggctcctc acgctttgtg cactctctga ggtaacagat ttgtctcctg acaccatcca
241 agcaaactca ctcttctcct tctatggtga cgatgaaatt gtaagcacag acatcaaatt
301 acatccagaa aagctgacag ctaacctaaa agagtatgga ctcaagccaa cccgtcctga
361 caagactgaa gggcctctgg tcatttctga agacttagat ggtctgacct tcttacggag
421 gactgtgacc cgtgacccag caggttggtt tggaaaattg gaacaaagct caatacttag
481 acaaatgtat tggaccaggg gccccaacca tgaggatccc gctgaaacaa tgataccaca
541 ctcccaaaga cccatacagt tgatgtccct attaggtgaa gctgcattac atggcccatc
601 attctacagc aaaatcagca aattggtcat ctcagagttg aaagaaggtg gtatggactt
661 ttacgtgcca aggcaagagc caatgtttcg atggatgagg ttctcagact tgagcacgtg
721 ggagggcgat cgcaatctgg ctcccaattt tgtgaatgaa gatggcgtcg aatgacgccg
781 ctccatctaa tgatggtgca gccggtctcg taccagaggt caacaatgag accatggccc
841 ttgaaccggt ggctggggct tcaatagccg ccccactcac cggtcaaaat aatgttatag
901 acccctggat tagattaaac tttgtgcagg ctcccaatgg agagtttaca gtttcacccc
961 gcaattcgcc tggggaagtc ctgctaaact tggaattagg ccctgaacta aatccatatt
1021 tggcacacct ttccagaatg tacaatggtt atgcaggtgg agttgaggtg caagtactac
1081 tggctgggaa cgcgttcacg gctggaaaac tggtattcgc cgcagttccc cctcattttc
1141 cattagaaaa cataagccct ggccaaataa ccatgttccc tcatgtaatt attgatgtta
1201 ggactttaga accagtccta ttgcctcttc cagatgttag gaacaatttc tttcactaca
1261 atcagcaaaa cgaaccatgg atgaggcttg tggcaatgct ctataccccc cttagatcta
1321 atggttctgg tgatgatgta tttactgtct cctgtagagt gcttactcga ccctctcctg
1381 attttgattt caattatttg gtacccccta cagttgaatc taaaactaaa cccttcacac
1441 tccctatctt gaccataggg gagttaacca attccagatt ccctgtgcct atagatgaac
1501 tctatactag ccccaatgag agtttggtgg tacaacccca gaacgggaga tgcgcgctgg
1561 acggggagtt gcagggtact actcagctcc tccccacggc gatctgctcg ttcaggggtc
1621 ggattaatca gaaagtgagt ggagagaatc atgtttggaa tatgcaagtc accaacatta
1681 acggaacccc ttttgatcca acagaggatg ttccagctcc tctaggtaca ccagactttt
1741 ctggcaagct ctttggcgtc ttaagccaga gggaccatga taatgcatgt aggagccatg
1801 atgcagtgat tgcaactaat tctgctaaat ttaccccaaa attgggcgct atacaaatag
1861 gcacatggga agaaaatgat gtacacatca accaacccac caagtttact ccagttggct
1921 tgttcgaaag tgaaggtttt aatcagtgga cactccctaa ttattctgga gccttgacac
1981 tcaatatggg gttggccccc cctgtggccc ccacatttcc tggtgagcaa attcttttct
2041 tcagatccca cattcctctc aaaggaggtg tggcagaccc agttattgat tgtctcttgc
2101 cccaagagtg gatccaacac ctttaccagg agtcagcccc ttcacaaaca gatgtagcac
2161 tgatcaggat tacaaatcca gacacagggc gtgtcctatt tgaagcaaaa ttgcacagga
2221 gtggctacat cacagtggcc aatactggta gcagaccaat tgtggtgcca gctaatggtt
2281 acttcaggtt tgactcttgg gttaatcagt tttattctct cgcccccatg ggaactggga
2341 atggacgcag aagggtgcag taatggctgg agctttcata gcaggtcttg ctggtgatat
2401 agtcaccaat ggtattggct cactcgtgaa cgctggggcc aatgcaataa accaaaaagt
2461 agactttgaa aacaacaagc aactactaca ggcatctttg aaccatgaca aagagatgct
2521 gcaagctcaa attcgagcca ccaaacagct acaggctgat atgattgcaa tcagacaagg
2581 ggtgttgacc gcgggcggct tctcccccac tgatgcagca agaggtgcag tcaacgcacc
2641 catgacacag gtcttggact ggaacgggaa cagacattgg gcccccggag ccatgaaaac
2701 aactgctttc tccggtggat tcaccagtgc ttctcatgcc aggaccgttg acctgactag
2761 gaaaatatca gccacaccag cctctatgcc tgtctctagg cccagttcta ctacttctac
2821 tgtttccacc cgttctacct tgattagcgg atcctctaat ccttcttctc tagctaggag
2881 ttcttctagt atttcttccc aacctacttc ctcatcctct cggactagtg attgggtacg
2941 tagccaaaac agagcactgg agccttatat gagcggggcg ctgcgtacag cctacgtgac
3001 gcctccatct agtagggctt ctagtaatgg cacagtctca accgtgccaa aagaggtttt
3061 ggactcctgg acatctgcat tcaacacaca cagacaaccg ctgtttgctc atctccgtcg
3121 gagaggggag tcacaagctt agtgaaaaga tggtcttttc tttcattcct ttgaatctct
3181 gtcttt
//